mRNA_Ecto-sp13_S_contig15164.3893.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15164.3893.1 vs. uniprot
Match: D7G997_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G997_ECTSI) HSP 1 Score: 667 bits (1720), Expect = 1.460e-235 Identity = 331/361 (91.69%), Postives = 342/361 (94.74%), Query Frame = 1
Query: 1 EGDKGVNIDSGTRSEHFGGAQRRHQQWLTRRAAELRDEGPALPSSAWSHAGRLAKGTFSRGGSPIPPPPGGIAGAGPLPTEGGAASVEERVYRMEEGVRLWGGTFVPPVEPARRLALIDKWSGNAWRARSNTSSSQEGGGDADDNTRGDDAGRILFVMTSFDRGRRLGPSFKKDKLDFILLMMDEMREACEAGFSPNVHLIAAWELSEVEVFIRDRLFCRRTGGHVPFSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFLQVEDDVIVTLNHMLLFREESELLDGRRHSDGATLANTAVPGFIRVEHAAGEEGTIVGPSSGEEWQEWEVMLSRLRPVKLEEAGIYLTLGPSLPVPRGGNNQ 1083
EGDKGVNIDSGTRSEHFGG QRRHQQ LTRRAAELRDEGPALP SAW+H GRLAKG FSRGGS +PPPPG IAGAGPLPT+ GAASVEERV+RMEEGVRLWG TFVPPVEP RRL LIDKWSGNA R R+NTSSSQEGGGDAD+NTRGDDAGRILFVMTSFDRGRRLGPSFKKDKLDFILLMMDE+REACEAGFSP VHLIAAWELS VEVF+RDRLFCRRTG HVP+SLEVHPSSIGNDLSIKHRIFMKPRLEEFDLF+QVEDDVIVTLNHMLLFREESELLDGRRHSDGA LANTAVPGFIRVEHAA EEGTI GPSSGEEWQEWEVMLSRLRPVKLEEAGI+LTLGPSLPVPRGGNNQ
Sbjct: 243 EGDKGVNIDSGTRSEHFGGVQRRHQQRLTRRAAELRDEGPALPGSAWAHVGRLAKGVFSRGGSRVPPPPGTIAGAGPLPTDVGAASVEERVHRMEEGVRLWGATFVPPVEPTRRLELIDKWSGNAGRGRTNTSSSQEGGGDADENTRGDDAGRILFVMTSFDRGRRLGPSFKKDKLDFILLMMDEIREACEAGFSPTVHLIAAWELSGVEVFVRDRLFCRRTGAHVPYSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFIQVEDDVIVTLNHMLLFREESELLDGRRHSDGAPLANTAVPGFIRVEHAAEEEGTIAGPSSGEEWQEWEVMLSRLRPVKLEEAGIFLTLGPSLPVPRGGNNQ 603
BLAST of mRNA_Ecto-sp13_S_contig15164.3893.1 vs. uniprot
Match: A0A6H5K627_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K627_9PHAE) HSP 1 Score: 604 bits (1557), Expect = 2.830e-210 Identity = 314/410 (76.59%), Postives = 327/410 (79.76%), Query Frame = 1
Query: 4 GDKGVNIDSGTRSEHFGGAQRRHQQWLTRRAAELRDEGPALPSSAWSHAGRLAKGTFSRGGSPIPPPPGGIAGAGPLPTEGGAASVEERVYRMEEGVRLWGGTFVPPVEPARRLALIDKWSGNAWRARSNTSSSQE------GGGDADDNTRGDDAGRILFVMTSFDRGRRLGPSFKKDKLDFILLMMDEMREACEAGFSPNVHLIAAWELSEVEVFIRDRLFCRRTGGHVPFSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFLQVEDDVIVTLNHMLLFREESELLDGRRHSDGATLANTAVPGFIRVEHAAGEEGTIVGPSSGEEWQEWEVMLSR----------------------------------------------------LRPVKLEEAGIYLTLGPSLP 1059
GDKGV+IDSGTRSEHFGG QR HQQWL RRAAELRDEGPALP S W+H G +AK SRGGS +PPPP GIAGAGPLPT+G AASVEERV+RMEEGVRLWGGTFVPPVEP RRL LIDKWSG+A R RS TS+SQE D +N+RGDDAGRILFVMTSFDRGRRLGPSFKKDKLDFILLMMDEMREACEAGFSPNVHLIAAWELSEVEVF+RDRLFCRRTGGHVP+SLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFLQVEDDVIVTLNHMLLFREESELLD RRHSDGATLANTAVPGFIRVEHAAGEEGT+VGPSSGEEWQEWEVMLSR L PVKLEEAGIYLTLGPSLP
Sbjct: 243 GDKGVSIDSGTRSEHFGGVQRGHQQWLMRRAAELRDEGPALPGSVWAHVGSIAKEVISRGGSWVPPPPAGIAGAGPLPTDGAAASVEERVHRMEEGVRLWGGTFVPPVEPTRRLELIDKWSGHAGRGRSKTSNSQEVSSFDYRSSDGGENSRGDDAGRILFVMTSFDRGRRLGPSFKKDKLDFILLMMDEMREACEAGFSPNVHLIAAWELSEVEVFVRDRLFCRRTGGHVPYSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFLQVEDDVIVTLNHMLLFREESELLDSRRHSDGATLANTAVPGFIRVEHAAGEEGTVVGPSSGEEWQEWEVMLSRRRSSLGEGIEEGIGSMNATRRMHHRRSLCFFSSTLNELFFLDSLGMNGVFTRLHPVKLEEAGIYLTLGPSLP 652
BLAST of mRNA_Ecto-sp13_S_contig15164.3893.1 vs. uniprot
Match: D8LJ04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ04_ECTSI) HSP 1 Score: 281 bits (720), Expect = 1.790e-85 Identity = 147/281 (52.31%), Postives = 194/281 (69.04%), Query Frame = 1
Query: 250 AASVEERVYRMEEGVRLWGGTFVPPVEPARRLALIDKWSGNAWRARSNTSSSQEGGGDADDNTRGDDAGRILFVMTSFDRGRRLGPSF--KKDKLDFILLMMDEMREACEAGFSPNVHLIAAWELSEVEVFIRDRLFCRRTGGHVPFSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFLQVEDDVIVTLNHMLLFREESELLDGRRHSDGAT-LANTAVPGFIRVEHAAGEEGTIVGPSSGEEWQEWEVMLSRLRPVKLEEAGIYLTLGPSLPVPRGGNNQ 1083
+ + ER +R++ G LW GT+VPP+EP RR L+ KWS +E G G ++GRIL+V++S+DR +RLG + K DKLD+IL+MMDEM+EACE GFSP+VHLIAAW+ SEV IRDRLFC+RTG VP+S E HP S+ N+L+IKHRI+MKPR+E+FD+F+QVEDD+IVTLNH+LL+REE + L+ R G+ N VPGF+RVE G + GE W EWE++LSRL P+K+ AG Y++L PS +PR GNNQ
Sbjct: 319 SVAATERAWRLKRGAELWRGTYVPPIEPTRRRELVYKWSYGK--------GPEEAAG-----ATGGESGRILYVISSYDRRKRLGLGYDGKVDKLDYILMMMDEMKEACEGGFSPHVHLIAAWDTSEVADLIRDRLFCQRTGELVPYSSEEHPPSVRNNLAIKHRIYMKPRVEDFDVFMQVEDDMIVTLNHILLYREECDNLEKRLGMGGSRGRPNVFVPGFLRVE-PGGTKDKEKDKWEGE-WFEWEIVLSRLNPIKIYGAGTYMSLSPSKVLPRAGNNQ 584
BLAST of mRNA_Ecto-sp13_S_contig15164.3893.1 vs. uniprot
Match: A0A6H5KYA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA1_9PHAE) HSP 1 Score: 273 bits (698), Expect = 2.190e-81 Identity = 147/276 (53.26%), Postives = 190/276 (68.84%), Query Frame = 1
Query: 265 ERVYRMEEGVRLWGGTFVPPVEPARRLALIDKWSGNAWRARSNTSSSQEGGGDADDNTRGDDAGRILFVMTSFDRGRRLGPSF--KKDKLDFILLMMDEMREACEAGFSPNVHLIAAWELSEVEVFIRDRLFCRRTGGHVPFSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFLQVEDDVIVTLNHMLLFREESELLDGRRHSDGAT-LANTAVPGFIRVEHAAGEEGTIVGPSSGEEWQEWEVMLSRLRPVKLEEAGIYLTLGPSLPVPRGGNNQ 1083
ERV+R++ G LW GT+VPP+EP RR LI KWS +E G G ++GRIL+V++S+DRG+RLG + K DKLD+IL+MMDEMREACEAGFSP+VHLIAAW+ SEV IRDRLFC+RTG VP+S E HP S+ N+L+IKHRI+MK R+E+FD+F+QVEDD+IVTLNH+LL+REE + LD R G+ N VPGF+RVE G + GE W EWE++ + P+ + AG Y++L PS +PR GNNQ
Sbjct: 410 ERVWRLKRGAELWPGTYVPPIEPTRRRELIYKWSYGK--------GPEEAAG-----ATGGESGRILYVISSYDRGKRLGLGYNGKVDKLDYILMMMDEMREACEAGFSPHVHLIAAWDTSEVADLIRDRLFCQRTGDLVPYSHEEHPPSVRNNLAIKHRIYMKSRVEDFDVFMQVEDDMIVTLNHILLYREECDNLDIRFGMGGSRGRPNVFVPGFLRVE-PGGTKDKEKDKGEGE-WFEWEIVFN---PINIYGAGTYMSLTPSKVLPRAGNNQ 667
BLAST of mRNA_Ecto-sp13_S_contig15164.3893.1 vs. uniprot
Match: D7G8K3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K3_ECTSI) HSP 1 Score: 236 bits (602), Expect = 4.590e-71 Identity = 146/300 (48.67%), Postives = 182/300 (60.67%), Query Frame = 1
Query: 208 GGIAGAGPLPTEGGAASVEERVYRMEEGVRLWGGTFVPPVEPARRLALIDKWS--GNAWRARSNTSSSQEGGGDADDNTRGD--DAGRILFVMTSFDRGRRLGPSFKK-DKLDFILLMMDEMREACEAGFSPNVHLIAAWELS-EVEVFIRDRLFCRRTGGHVPFSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFLQVEDDVIVTLNHMLLFREESELLDGRRHSDG--ATLANTAVPGFIRVEHAAGEEGTIVGPSSGEEWQEWEVMLSRLRPVKLEEAGIYLTLGPSLPVPRGGNNQ 1083
G +A PLP +EER+ R+E GV LWG T+VPP+ P L DKW+ G A T +A ILFV+TSFDRGRRLG K DKL+++L++MDE+R ACEAGFSP+VHLI+AWE EVE+F DRL CRR GG V +LE HP SI LSIKHRI+MKPR+ E+DLF+Q+EDD+I+T+NH+L + EESE L R A + +PGF+RVE G G G EW EWE++LSR R V + AG YL L S +P GNNQ
Sbjct: 4 GEVAAFEPLP-------LEERLGRLETGVELWGATYVPPIAPEEMRRLTDKWTAVGAVSGAXXXXXXXXXXXXXXXXXTAATTVEAPSILFVVTSFDRGRRLGRRGKGVDKLNYVLMIMDEIRGACEAGFSPHVHLISAWEAQPEVELFT-DRLLCRRIGGPVTLTLEEHPPSIKEALSIKHRIYMKPRVREYDLFVQLEDDMILTVNHILKYLEESEKLSLRNIGTRPRAMPMHDYMPGFVRVEPEPGATGV------GGEWFEWEIILSRFRGVHVVGAGTYLGLEKSRVLPFSGNNQ 289
BLAST of mRNA_Ecto-sp13_S_contig15164.3893.1 vs. uniprot
Match: A0A6H5JCA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA6_9PHAE) HSP 1 Score: 236 bits (603), Expect = 2.650e-68 Identity = 150/337 (44.51%), Postives = 191/337 (56.68%), Query Frame = 1
Query: 151 GRLAKGTFSRGGSPIPPPPGGIAGAG-----PLPTEGGAASVEERVYRMEEGVRLWGGTFVPPVEPARRLALIDKWSG-----------------NAWRARSNTSSSQEGGGDADDNTRGDDAGRILFVMTSFDRGRRLGPSFKK-DKLDFILLMMDEMREACEAGFSPNVHLIAAWELS-EVEVFIRDRLFCRRTGGHVPFSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFLQVEDDVIVTLNHMLLFREESELLDGRRHSD--GATLANTAVPGFIRVEHAAGEEGTIVGPSSGEEWQEWEVMLSRLRPVKLEEAGIYLTLGPSLPVPRGGNNQ 1083
G +G F G PP G + G PLP +EER+ R+E GV LWG T+VPP+ P L +KW+ S T++ + + ILFV+TSFDRGRRLG K DKLD++L++MDE+R ACEAGFSP+VHLI+AWE E+E+F DRL CR+ GG V +LE HP SI LSIKHRI+MKPR+ E+DLF+Q+EDD+I+T+NH+L + EESE L R GA + +PGFIRVE G G G EW EWE++LSR R V + AG YL L S +P GNNQ
Sbjct: 269 GGKGEGGFRALGDEPPPGQGDMEGGEVAAFEPLP-------LEERLSRLETGVELWGATYVPPIAPKEMRRLTEKWTAVGAVSGAXXXXXXXXXXXXXXXASTTAAPDQV-----------EMPSILFVVTSFDRGRRLGLRRKGVDKLDYVLMIMDEIRGACEAGFSPHVHLISAWEAQPELELFT-DRLLCRKIGGPVTLTLEKHPPSIKETLSIKHRIYMKPRVREYDLFVQLEDDMILTVNHILTYLEESEKLSLRNIGSRPGAMPMHDYMPGFIRVEPKPGATGV------GGEWFEWEIILSRFRGVHVVGAGTYLGLEKSRVLPISGNNQ 580
BLAST of mRNA_Ecto-sp13_S_contig15164.3893.1 vs. uniprot
Match: A0A7S1YD73_9EUKA (Hypothetical protein n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1YD73_9EUKA) HSP 1 Score: 103 bits (258), Expect = 2.760e-21 Identity = 56/155 (36.13%), Postives = 82/155 (52.90%), Query Frame = 1
Query: 454 GRILFVMTSFDRGRRLGPSFKKDKLDFILLMMDEMREACEAGFSPNVHLIAAWELSEVEVFIRDRLFCRRTGGHVPFSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFLQVEDDVIVTLNHMLLFREESELLDGRRHSDGATLANTAVPGFIRVE 918
GRIL++++S DRG R+ ++ DK IL M E R CE G + V AW L E+ I +L+C R +P + P S+G +LS KHR ++ LEEFDLF+ +EDD+ + L + + + LL +SD V G +R E
Sbjct: 56 GRILWMISSTDRGERIRSQYRGDKFSIILRQMREARFLCEFGHTVQVSFQTAWPLEELSDEIDAQLYCERINARIPVWYQEWPKSVGGELSSKHRTVVREHLEEFDLFVHMEDDIHIRLEQVQAYWRQDFLLTQAGYSD------KFVSGLMRYE 204
BLAST of mRNA_Ecto-sp13_S_contig15164.3893.1 vs. uniprot
Match: A0A7S3MI24_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MI24_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 4.780e-13 Identity = 43/137 (31.39%), Postives = 74/137 (54.01%), Query Frame = 1
Query: 508 SFKKDKLDFILLMMDEMREACEAGFSPNV--HLIAAWELSEVEVFIRDRLFCRRTGGHVPFSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFLQVEDDVIVTLNHMLLFREESELLDGRRHSDGATLANTAVPGFIR 912
+F +D +LL+ +E CE G+ P V H W S + + R R +C R G + L+VH SS+G L++KH+I ++ + + D F+ EDD+I +H++ + E++ L S+ T ++V GF+R
Sbjct: 47 NFNFKHIDPLLLIFNEYVSMCEGGWEPTVVLHTTVNWT-STMHRYFRQRTYCYRKGASINIRLDVHDSSVGTGLAMKHKIILQQEINDHDFFVYHEDDIIFKYSHLVGYLNETKKL---HDSNPETELQSSVIGFLR 179 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15164.3893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15164.3893.1 >prot_Ecto-sp13_S_contig15164.3893.1 ID=prot_Ecto-sp13_S_contig15164.3893.1|Name=mRNA_Ecto-sp13_S_contig15164.3893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=367bp EGDKGVNIDSGTRSEHFGGAQRRHQQWLTRRAAELRDEGPALPSSAWSHAback to top mRNA from alignment at Ecto-sp13_S_contig15164:196..3732+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15164.3893.1 ID=mRNA_Ecto-sp13_S_contig15164.3893.1|Name=mRNA_Ecto-sp13_S_contig15164.3893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15164:196..3732+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15164:196..3732+ >mRNA_Ecto-sp13_S_contig15164.3893.1 ID=mRNA_Ecto-sp13_S_contig15164.3893.1|Name=mRNA_Ecto-sp13_S_contig15164.3893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15164:196..3732+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |