mRNA_Ecto-sp13_S_contig15162.3892.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15162.3892.1
Unique NamemRNA_Ecto-sp13_S_contig15162.3892.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15162.3892.1 vs. uniprot
Match: A0A6H5LE02_9PHAE (DUF3668 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE02_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 4.870e-5
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 3 
Query:   18 LSLLEDMVPTGDPDDQANLPG*GQTDDP 101
            + LLEDM PTGDPDDQANLPG GQT DP
Sbjct:  625 ILLLEDMGPTGDPDDQANLPGLGQTIDP 652
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15162.3892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LE02_9PHAE4.870e-582.14DUF3668 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15162contigEcto-sp13_S_contig15162:2474..3280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size268
Hectar predicted targeting categorymitochondrion
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462806.7506697-CDS-Ecto-sp13_S_contig15162:2473..26751681462806.7506697-CDS-Ecto-sp13_S_contig15162:2473..2675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15162 2474..2675 -
1681462806.760198-CDS-Ecto-sp13_S_contig15162:3215..32801681462806.760198-CDS-Ecto-sp13_S_contig15162:3215..3280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15162 3216..3280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15162.3892.1prot_Ecto-sp13_S_contig15162.3892.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15162 2474..3280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15162.3892.1

>prot_Ecto-sp13_S_contig15162.3892.1 ID=prot_Ecto-sp13_S_contig15162.3892.1|Name=mRNA_Ecto-sp13_S_contig15162.3892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
FPAITACPSWKTWCLLVTPMIRRTFQAKDRPTTRGAIISTTNPTSTVNCT
ITRGAVLGDRDSDKGQGQDCHKRRRQLQRRGQRGPRRR*
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mRNA from alignment at Ecto-sp13_S_contig15162:2474..3280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15162.3892.1 ID=mRNA_Ecto-sp13_S_contig15162.3892.1|Name=mRNA_Ecto-sp13_S_contig15162.3892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15162:2474..3280- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCCTGCCATCACGGCCTGTCCCTCCTGGAAGACATGGTGCCTACTGGT
GACCCCGATGATCAGGTCGGTGCCGCCGCATGGATGCAGAAAAGAGCGGA
GGAGTCACTATCGTGTGCCGTATCATATGTCCCCCTCCATCCTGATCCGA
GGTGAACGGTCAAACCACTACGTCATCCACGACTATGAGCACACACACAC
CCCTGATCCGTCTCTGCTTGGTTCCTATGGTCATCTTGGTGTGGTTGGCC
ACGCTGCCGTGATGATATGCTGCCTGCACTAGCCATAGGGTGACAACCAC
AAGCTTGTTGCGTCGGTCACTTGGCGATTTGGAAATGTATGCCAGGCTCT
TTTGCCCAGGCCAGGCTTTTAGGGGTCCTCGGTGTGGAACCCCCGAAGGC
CGGCTCCAACTATCCGTTCGCGACGCTCTTGGCATCATAGCACTCTTGTC
AAGGAATGGACACCCACGGCGACACCAGCAGGAAACGCCCACCCGCCATC
AAAACAGAGAGAAATAGGGAGAATTGTCGACGGTCGACTGGACACGACGC
CACAGTGATCCGTTTCCTCGCTGCACGACGTCCTACCCGTTACCCCCTCC
TGTAGGCGAACCTTCCAGGCTAAGGACAGACCGACGACCCGTGGGGCCAT
CATCAGTACCACCAATCCCACTAGTACCGTCAACTGCACAATCACCAGAG
GCGCGGTCCTTGGGGATAGAGATAGCGACAAGGGGCAGGGGCAGGACTGT
CACAAGCGGCGGCGGCAGCTGCAGAGGCGAGGGCAGCGAGGGCCGAGGCG
GAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15162:2474..3280-

>mRNA_Ecto-sp13_S_contig15162.3892.1 ID=mRNA_Ecto-sp13_S_contig15162.3892.1|Name=mRNA_Ecto-sp13_S_contig15162.3892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15162:2474..3280- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCCTGCCATCACGGCCTGTCCCTCCTGGAAGACATGGTGCCTACTGGT
GACCCCGATGATCAGGCGAACCTTCCAGGCTAAGGACAGACCGACGACCC
GTGGGGCCATCATCAGTACCACCAATCCCACTAGTACCGTCAACTGCACA
ATCACCAGAGGCGCGGTCCTTGGGGATAGAGATAGCGACAAGGGGCAGGG
GCAGGACTGTCACAAGCGGCGGCGGCAGCTGCAGAGGCGAGGGCAGCGAG
GGCCGAGGCGGAGGTAG
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