mRNA_Ecto-sp13_S_contig15154.3885.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig15154.3885.1
Unique Name	mRNA_Ecto-sp13_S_contig15154.3885.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot
Match: A0A6H5JHU6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHU6_9PHAE)

HSP 1 Score: 450 bits (1157), Expect = 3.090e-155
Identity = 230/234 (98.29%), Postives = 232/234 (99.15%), Query Frame = 1

Query:    1 IMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLGRGMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARILHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGV 702
            IMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDL+ENHGLGR MRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARILHAELFT MGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVG+
Sbjct:  141 IMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLLENHGLGRSMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARILHAELFTHMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGL 374

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BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot
Match: D7FSF4_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF4_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 8.960e-151
Identity = 229/236 (97.03%), Postives = 231/236 (97.88%), Query Frame = 1

Query:    1 IMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLGRGMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARI--LHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGV 702
            IMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLGR MRDLDTL+FDEADQLLEMGFRPAIENILRNLQASK  RQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARI  LHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVG+
Sbjct:  201 IMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLGRDMRDLDTLVFDEADQLLEMGFRPAIENILRNLQASKTYRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARIVQLHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGL 436

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BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot
Match: A0A835ZDJ4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ4_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.280e-82
Identity = 140/235 (59.57%), Postives = 170/235 (72.34%), Query Frame = 1

Query:   10 FHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLGRGMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPD--HKIIVFFVAARI--LHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGV 702
            F  ++L C  GG N+  DL +L+   PDI+VATPGRL D +EN  L R +  L  L+ DEADQLLEMGFRPAIE  LRNL    A RQTL+FSATMP DV+AI+ IAM+P +E+VD VGEEE+TH+HVPQ   V  M   +P+LL  + +A  D D  HKIIVFF  AR+   HAEL   MG+ VLE HSRKSQ+ RT+V++ FRNG G IMFTSDV+ARGMDYPDV+ VIQVG+
Sbjct:  102 FMGMRLQCIFGGTNIKADLRKLSDATPDILVATPGRLNDHLENQTLARQLAGLSALVLDEADQLLEMGFRPAIEAALRNLPPPSA-RQTLLFSATMPQDVRAISRIAMRPDFELVDTVGEEESTHEHVPQSAVVTTMEHGVPQLLLLLRRAVHDADGAHKIIVFFTTARLTQFHAELCNAMGMPVLEIHSRKSQSQRTKVSDQFRNGSGLIMFTSDVTARGMDYPDVTSVIQVGI 335

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BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot
Match: A0A6H5L2V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V2_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 6.580e-80
Identity = 139/238 (58.40%), Postives = 172/238 (72.27%), Query Frame = 1

Query:    1 IMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLGRGMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILK--AKEDPDHKIIVFFVAARI--LHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGV 702
            +++FH + L+C VGG N+  D+       PDI+VATPGRL D ++N+GL + M  L  LIFDEADQLLEMGFRPAIE ILR +  S+  RQTL+FSATMPGDV+ IA +A+K  YE VDCVGEEE+THQHVPQ++ V    +Q+  L   + +  A +   HKIIVFF  AR+   +AEL   MG  VLE HSRKSQ  R +V+E FRNG+G +MFTSDVSARGMDYPDVS VIQVG+
Sbjct:  140 VLTFHDMSLICVVGGTNIKADIRGFRD-RPDIVVATPGRLNDHLDNNGLAKDMAGLSHLIFDEADQLLEMGFRPAIEAILRYMPHSR-DRQTLLFSATMPGDVRKIAQLALKERYEFVDCVGEEESTHQHVPQQYTVCGQDQQVEELCQLLRENMAADPRGHKIIVFFTTARLTQFYAELCNLMGFPVLEIHSRKSQGHRNKVSELFRNGQGLVMFTSDVSARGMDYPDVSAVIQVGL 375

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BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot
Match: D8LUB6_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB6_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 1.830e-79
Identity = 139/238 (58.40%), Postives = 172/238 (72.27%), Query Frame = 1

Query:    1 IMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLGRGMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILK--AKEDPDHKIIVFFVAARI--LHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGV 702
            +++FH + L+C VGG N+  D+       PDI+VATPGRL D ++N+GL + M  L  LIFDEADQLLEMGFRPAIE ILR +  S+  RQTL+FSATMPGDV+ IA +A+K  YE VDCVGEEE+THQHVPQ++ V    +Q+  L   + +  A +   HKIIVFF  AR+   +AEL   MG  VLE HSRKSQ  R +V+E FRNG+G +MFTSDVSARGMDYPDVS VIQVG+
Sbjct:  240 VLTFHDMSLICVVGGTNIKADIRGFRD-RPDIVVATPGRLNDHLDNNGLAKDMAGLSHLIFDEADQLLEMGFRPAIEAILRYMPHSR-DRQTLLFSATMPGDVRKIAQLALKERYEFVDCVGEEESTHQHVPQQYTVCGQDQQVEELCQLLRENMAADPRGHKIIVFFTTARLTQFYAELCNLMGFPVLEIHSRKSQGHRNKVSELFRNGQGLVMFTSDVSARGMDYPDVSAVIQVGL 475

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BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot
Match: A0A7S2UXM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXM4_9STRA)

HSP 1 Score: 246 bits (628), Expect = 3.980e-76
Identity = 125/237 (52.74%), Postives = 168/237 (70.89%), Query Frame = 1

Query:    1 IMSFHRLKLMCSVGGVNVNRDLNQLNSGAP-DIMVATPGRLLDLMENHGLGRGMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARILH--AELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGV 702
            +++FH+  L    GG N++RDL +   G P D++VATPGRL D ++NHGL   M  L  LI DE DQLL+MGFRPAIE I+  L   K  RQ L+FSAT+P DVQ IA +A+ P Y +VDCVGEE++TH+HVPQ + V  M++Q+  L A + +A + P +K++ FF  AR+    AELF ++G+ VLE HSRKSQ  RTR +++FR G   +MFTSDVSARGMDYP+V+ V+QVG+
Sbjct:   15 LLTFHQYTLATFFGGTNMSRDLKRFQQGPPPDLVVATPGRLEDHLQNHGLRDHMASLKVLILDECDQLLDMGFRPAIERIIGWLPP-KQGRQNLLFSATLPQDVQTIARVALNPRYAMVDCVGEEQSTHEHVPQSYLVCSMSDQLKELYALVREAMQQPGYKVLAFFTTARMTQFFAELFVKLGIPVLEIHSRKSQKYRTRTSDSFRKGSNLVMFTSDVSARGMDYPNVTSVVQVGL 250

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BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot
Match: A0A7S3XXC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXC6_HETAK)

HSP 1 Score: 239 bits (610), Expect = 1.650e-73
Identity = 128/235 (54.47%), Postives = 161/235 (68.51%), Query Frame = 1

Query:    1 IMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENH-GLGRGMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARI--LHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQV 696
            ++ FH L L    GG  + +D++  N   PDI+VATPGRLLD +EN  G       L  LI DE DQLL+MGFRP+I  IL++L   K+ RQTL+FSATMP DVQ +A   + PSYE+VDCVG+E  THQ VPQ F V  + +Q+  L   I + ++ P HK+IVFF  AR+   +AE+F  MGV VLE HSRKSQ  RT+V++ FR G G +MFTSDVSARGMDYPDV+ VIQV
Sbjct:  198 LLKFHDLGLQVVFGGTKMTKDVSSFNRRTPDILVATPGRLLDHLENTPGFREACAGLQCLILDECDQLLDMGFRPSIVKILQHLPP-KSGRQTLLFSATMPQDVQEMARFGLNPSYELVDCVGKEAGTHQQVPQTFLVCSVEDQLGELAQIIAEGRQVPGHKLIVFFTTARLTQFYAEVFNFMGVPVLEIHSRKSQGHRTKVSDQFRTGNGLVMFTSDVSARGMDYPDVTGVIQV 431

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BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot
Match: A0A7S4D8Q7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8Q7_HETAK)

HSP 1 Score: 242 bits (617), Expect = 2.050e-73
Identity = 129/237 (54.43%), Postives = 163/237 (68.78%), Query Frame = 1

Query:    1 IMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENH-GLGRGMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARI--LHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGV 702
            ++ FH L L    GG  + +D++  N   PDI+VATPGRLLD +EN  G       L  LI DE DQLL+MGFRP+I  IL++L   K+ RQTL+FSATMP DVQ +A   + PSYE+VDCVG+E  THQ VPQ F V  + +Q+  L   I + ++ P HK+IVFF  AR+   +AE+F  MGV VLE HSRKSQ  RT+V++ FR G G +MFTSDVSARGMDYPDV+ VIQVG+
Sbjct:  118 LLKFHDLGLQVVFGGTKMTKDVSSFNRRTPDILVATPGRLLDHLENTPGFREACAGLQCLILDECDQLLDMGFRPSIVKILQHLPP-KSGRQTLLFSATMPQDVQEMARFGLNPSYELVDCVGKEAGTHQQVPQTFLVCSVEDQLGELAQIIAEGRQVPGHKLIVFFTTARLTQFYAEVFNFMGVPVLEIHSRKSQGHRTKVSDQFRTGNGLVMFTSDVSARGMDYPDVTGVIQVGM 353

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BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot
Match: A0A7S1J8E5_9EUGL (Hypothetical protein (Fragment) n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J8E5_9EUGL)

HSP 1 Score: 240 bits (612), Expect = 4.350e-73
Identity = 133/239 (55.65%), Postives = 173/239 (72.38%), Query Frame = 1

Query:    1 IMSFHR-LKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLGRGMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKE-DP-DHKIIVFFVAARI--LHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGV 702
            +++FH+ ++ +   GG  + RDL+ L +  PD++VATPGRL D +E+ G+   +  L TLIFDEADQLLEMGFRPAIE +LR L   K++R+TL+FSATMP DV+AIA  A++ SY+ VDCVG E++THQHVPQ   V  + EQ+  L+A + KA   DP D KIIVFF  AR+   +AE+F   G+  LE HSRKSQ+ RT+V++ FR G    MFTSDVSARGMDYPDVS VIQVG+
Sbjct:  101 LLTFHQGIRSLVVFGGTPIKRDLSALQT-PPDLLVATPGRLNDHLEHSGIQSKITKLQTLIFDEADQLLEMGFRPAIETMLRMLPP-KSTRRTLLFSATMPADVKAIAKFALRDSYDFVDCVGAEQSTHQHVPQTSVVCTLQEQLVNLIAQVQKAMAADPQDFKIIVFFTTARLTQFYAEVFNHAGIPTLEIHSRKSQSHRTKVSDKFREGSRLCMFTSDVSARGMDYPDVSAVIQVGM 337

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BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot
Match: A0A7S3XX82_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX82_HETAK)

HSP 1 Score: 240 bits (613), Expect = 9.070e-72
Identity = 130/238 (54.62%), Postives = 167/238 (70.17%), Query Frame = 1

Query:    1 IMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLG-RGM-RDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKIIVFFVAARI--LHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGV 702
            ++ FH L L   VGG  +++D   L    PDI+VATPGRL  L++    G RG    L  L+ DE DQLL+MGFRP+I  ILR L   KA RQ+L+FSAT+P DVQ IA + +KPSYE+VDCVGEEE+TH+HVPQ   V  M  Q+  L   + + ++ P HKIIVFF  AR+   +AE+F  MGV VLE HSRKSQ+ART+++E FR  +G +MF+SDVSARGMDYPDV+ V+QVG+
Sbjct:  234 LLKFHDLGLQTVVGGTKMSKDAAALRRRTPDIVVATPGRLEALLDEDTAGFRGACAGLRVLVMDECDQLLDMGFRPSILRILRGLPP-KAGRQSLLFSATLPRDVQEIAGLGLKPSYELVDCVGEEESTHRHVPQSVLVCSMETQLAELAQIVEEGRQVPGHKIIVFFTTARLTQFYAEIFNFMGVPVLEMHSRKSQSARTKISEQFRTQQGVVMFSSDVSARGMDYPDVTQVVQVGM 470

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig15154.3885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JHU6_9PHAE	3.090e-155	98.29	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
D7FSF4_ECTSI	8.960e-151	97.03	DEAD box helicase n=1 Tax=Ectocarpus siliculosus T...	[more]
A0A835ZDJ4_9STRA	1.280e-82	59.57	P-loop containing nucleoside triphosphate hydrolas...	[more]
A0A6H5L2V2_9PHAE	6.580e-80	58.40	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LUB6_ECTSI	1.830e-79	58.40	DEAD box helicase n=1 Tax=Ectocarpus siliculosus T...	[more]
A0A7S2UXM4_9STRA	3.980e-76	52.74	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A7S3XXC6_HETAK	1.650e-73	54.47	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S4D8Q7_HETAK	2.050e-73	54.43	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S1J8E5_9EUGL	4.350e-73	55.65	Hypothetical protein (Fragment) n=2 Tax=Eutreptiel...	[more]
A0A7S3XX82_HETAK	9.070e-72	54.62	Hypothetical protein (Fragment) n=2 Tax=Heterosigm...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig15154	contig	Ecto-sp13_S_contig15154:120..3426 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	445.7
Seed ortholog evalue	1.4e-122
Seed eggNOG ortholog	2880.D7FSF4
Preferred name	MSS116
Model size	711
KEGG ko	ko:K17679
Hectar predicted targeting category	other localisation
GOs	GO:0000166,GO:0000372,GO:0000373,GO:0000375,GO:0000376,GO:0000377,GO:0000959,GO:0000963,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006351,GO:0006354,GO:0006390,GO:0006392,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0030554,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0033592,GO:0034337,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0090615,GO:0097159,GO:0097367,GO:0097617,GO:0097659,GO:0140053,GO:0140098,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Exons	5
EggNOG free text desc.	helicase activity
EggNOG OGs	COG0513@1,KOG0342@2759
EC	3.6.4.13
Cds size	708
COG Functional cat.	JKL
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko03029

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig15154.3885.1	prot_Ecto-sp13_S_contig15154.3885.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig15154 120..3423 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462806.2414315-CDS-Ecto-sp13_S_contig15154:119..317	1681462806.2414315-CDS-Ecto-sp13_S_contig15154:119..317	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15154 120..317 -
1681462806.2548118-CDS-Ecto-sp13_S_contig15154:1030..1142	1681462806.2548118-CDS-Ecto-sp13_S_contig15154:1030..1142	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15154 1031..1142 -
1681462806.2696354-CDS-Ecto-sp13_S_contig15154:2199..2339	1681462806.2696354-CDS-Ecto-sp13_S_contig15154:2199..2339	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15154 2200..2339 -
1681462806.278191-CDS-Ecto-sp13_S_contig15154:2718..2863	1681462806.278191-CDS-Ecto-sp13_S_contig15154:2718..2863	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15154 2719..2863 -
1681462806.2866907-CDS-Ecto-sp13_S_contig15154:3310..3423	1681462806.2866907-CDS-Ecto-sp13_S_contig15154:3310..3423	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15154 3311..3423 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462806.295121-UTR-Ecto-sp13_S_contig15154:3423..3426	1681462806.295121-UTR-Ecto-sp13_S_contig15154:3423..3426	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig15154 3424..3426 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig15154:120..3426-
coding sequence from alignment at Ecto-sp13_S_contig15154:120..3426-

protein sequence of mRNA_Ecto-sp13_S_contig15154.3885.1

>prot_Ecto-sp13_S_contig15154.3885.1 ID=prot_Ecto-sp13_S_contig15154.3885.1|Name=mRNA_Ecto-sp13_S_contig15154.3885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=236bp
MSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLDLMENHGLGR
GMRDLDTLIFDEADQLLEMGFRPAIENILRNLQASKASRQTLMFSATMPG
DVQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATI
LKAKEDPDHKIIVFFVAARILHAELFTQMGVDVLETHSRKSQAARTRVAE
AFRNGKGQIMFTSDVSARGMDYPDVSLVIQVGVFS*

mRNA from alignment at Ecto-sp13_S_contig15154:120..3426-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig15154.3885.1 ID=mRNA_Ecto-sp13_S_contig15154.3885.1|Name=mRNA_Ecto-sp13_S_contig15154.3885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3307bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15154:120..3426- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCATGTCCTTTCACAGGCTGAAGCTCATGTGTTCCGTCGGGGGCGTCAA
CGTCAACCGGGATCTGAACCAGCTCAACTCGGGGGCCCCGGACATCATGG
TGGCGACGCCGGGAAGGTAAAGACGGGTGACCATTTTTCCCCCCCTTTTT
CGTTTTTTCCCCCTTACCCATTCTTGATGTTGATGTTGTTGTCGTGGGTG
TTGGTGGTGGTGTTTTTGACCTTGGTTAGTTCACGAGACTGCTTCGGTCT
GTTCAAGAACCAAGTATGACTTCATAGTTGTTGTCGTGGGTGTCGTGGGT
GTTGGTGTTGTTGTGTTTTGACCTTTGGCTAGTTCACGAGACTGCTTCGG
TCTGTTAGAGAACCAAGTATGACTTCACAGTAGTATTTTCAACCATGCCT
GACTCGGTAGGCTCCTCGATCTGTACGAGAACCAACGACATTAGTGCTTA
CCACTTTGCCTGACTCGTCAAGGCTCCTTGATCTGTTGGAGAACCAACGA
CTTCAAACAGTTTTACTACTAGCGTTTTTTTACCTCGCTTTATTCCCTCG
CCTATTCCACTAGGCTCCTTGATCTGATGGAGAATCACGGCTTGGGGCGA
GGCATGAGGGACCTCGACACTCTTATTTTCGACGAGGCTGACCAGCTCCT
CGAGATGGGCTTCCGCCCTGCCATCGAGAACATCCTCAGGAACCTGCAAG
CGAGCAAGGTGAAAAGAGCAGAAGTATTTTTGAAGTTGTTTTTTGGTATT
TAGAGGAAATTTTTGCAGCATACTTCCCCTGAACCAAAAGTGAAGAAACT
TCCGGGAAATTTCAGCAATACACACGTACGTACACACCCGCTTGATCCTG
AGCCAACCGACGATCTTTCTGTTCTTCGCTGTGCCGTTCTTCTGCTGTTC
CTCTTTTTTGTCCGTGCCGCTCTCCAGATAACTACGTACCTCCTCCCGGC
TGTACCTCTTCTGATGTTGACTGGGCTGTCGTCCCTGTCCCCCTTTTTCA
TCGAATCGTGCCTACTGCTGTACCTCTTTTGTGTTTCTCTTTTTGCTGGT
CGCTCCCGCCGTGGCTTGTCGTGGCATGGCGCACCAGGCCTCTCGGCAGA
CCCTAATGTTCAGCGCGACCATGCCCGGGGACGTTCAGGCCATCGCTAGC
ATCGCCATGAAGCCAAGCTACGAGGTCGTCGACTGCGTCGGGGAGGAAGA
AAACACCCACCAGCACGTCCCACAGAAGTGAGTGGTACGGTACTTCTTCC
ATGGTTTTTTTCCATGGTACGTTTATGCTCACCAGTACATTCCGCAGAAG
TGAGTGATCGTGGAGGAAGAAGACACCCACCAGCATGTCCCGCCGAAGTG
AGAGGACAGTACCCTCTTCAATGGTTTTGCCCATGGTACGTTTATGTCCA
TCAGCACATTTCGCAGGAGTGAGCTGCACCATTTACCATGGTATATATTT
TGCCTTCAAATGTTAGAGTGCCTCTTTCTAGCCATGACTGCGTGGGGGGG
GAACGAAATACCCACCAGCGCGTCCGCAGAAGTGAGTGGTACCGTGTCCC
ATGGTACGGTACGTTCGCGCACCATTTTGTAAATGGTACGCTTGTGTACA
TTGAGTTTCCATCACAACACTCAGCACATCCGCACAAGTGGTCCCGTTTT
CCATGGCACATTAAGTTCCCAGCGCCACGTCCTGCATACGTGAATGGTTA
CGCCGTTACCCTCGGAAGTTATGTGGGTAGATTTGTAGGGATTCCCACCG
ACAAGTTCCGCACAAGTGGTCCCGTTTTCCATGGCACATTGAGTTCCCAG
CTCCACGTCCTGCATACGTGAATGGTTACGCCCTAGCCGTCGGAGGTTAT
GTGGGTAGATTTGTAGGGGTTTCCACCAACACGCCACGCGAAAGCGTGTG
GTACCTTTTTCCATGTGTGTATGTTTACTTGAGCAATGGTGATGATGCGT
ATTCTTCACGCTACTGTACTTGTGCAATGGAAAAATGTGGCGTTGGATAT
GCAAACCAAATAAAAGCGACGCACATGCTGACGTATTGGCTTGCGGATCC
TGCGGGGAGTATATCTTGTTTAGGTAAGTTAGCCTGTGCCCACGGGAATC
GCTCGTTCAAGTGTTGGATCAGTACGGACAGATGAAGGTACTGGGTAGAG
ATATCGGAACGGTTTTTAATGTGAAGGCAACAGCAACAGCAACAGCAACA
TATTGTTGATGATGTTGTGTGGCACGTGTGTCTGACTGTCTGTCTGTCCG
TTGATCGTTTTCCCGACAAAAAACAAACAAACAGGTTTGCCGTGGTTCCG
ATGGCGGAGCAAATACCCCGGCTCTTGGCGACGATCCTCAAGGCTAAGGA
AGACCCCGACCACAAGATTATCGTCTTCTTCGTGGCCGCGAGGATCGTGC
AGGCAAGCCAGTCATTCTATTTGTGGTCAATCGAGGGTACAGTAGTAGTA
GCAGTTGAGTCGTTTTTTGGTAAATCGAGGGTACAGCAGTTCGGTTGACG
GGGAGAGGGAAACTACAGGCAGGTCAGTCGTTTTACTTGTGGTCAATAGA
GGGTACAGTAGTGGCAAAAGTTGACAATGGGGATCCTTCGACTTTGATTT
GTTTGTGGTCAGTCGAGGGTACAACTATTGTCGTTGATGGGGGGGAGGAT
CGTACCGGCAAGTCAGTCGTTTGATGACCAATCGAGGGTACAACAGCAGA
AGTAGTAGTTGGTTATGGAGACGAGGATCGTCCATGAGCGTCGCTTTATG
GTCAATCGAGGGTACAACAGGTCAGTTGACGGGGATGGCGGTCGCACAGG
TAAGTCAGTTGCTTTATGGCCAATCGAAGGTACAACAGCTAGTTTGAAGG
GATGAGGGTCGTCCAGGCGAGTCAATTGTTTTTTGTTCAATCGAGGGTAA
AACAGCATTACTCGATAGCAGGGGTGTTTCGGGCTAGTTGAACGAGTCTA
GTCGAAAATGTTTTGTGCAAGTTGTGCGACTGTTGTGTAGATAGCCATCG
TCCAACCACGAGAATAGAAGAGCAATGAAGTCACAGCAGTGTAGTGTATA
ATGCCCCACTTGTGCTCTTGCGGTTCCGTTTTTGTGCTTCCCACGACAAA
ATAAAACAGCTGCACGCCGAGCTTTTCACCCAGATGGGAGTAGACGTGCT
CGAGACCCACTCGCGAAAGTCTCAAGCGGCCCGAACCCGCGTCGCGGAGG
CCTTCCGCAACGGCAAGGGGCAGATCATGTTCACCAGTGATGTCTCGGCG
AGAGGGATGGACTACCCCGACGTGTCTCTCGTCATTCAGGTGGGGGTGTT
CTCGTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15154:120..3426-

>mRNA_Ecto-sp13_S_contig15154.3885.1 ID=mRNA_Ecto-sp13_S_contig15154.3885.1|Name=mRNA_Ecto-sp13_S_contig15154.3885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15154:120..3426- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTTTCACAGGCTGAAGCTCATGTGTTCCGTCGGGGGCGTCAACGT
CAACCGGGATCTGAACCAGCTCAACTCGGGGGCCCCGGACATCATGGTGG
CGACGCCGGGAAGGCTCCTTGATCTGATGGAGAATCACGGCTTGGGGCGA
GGCATGAGGGACCTCGACACTCTTATTTTCGACGAGGCTGACCAGCTCCT
CGAGATGGGCTTCCGCCCTGCCATCGAGAACATCCTCAGGAACCTGCAAG
CGAGCAAGGCCTCTCGGCAGACCCTAATGTTCAGCGCGACCATGCCCGGG
GACGTTCAGGCCATCGCTAGCATCGCCATGAAGCCAAGCTACGAGGTCGT
CGACTGCGTCGGGGAGGAAGAAAACACCCACCAGCACGTCCCACAGAAGT
TTGCCGTGGTTCCGATGGCGGAGCAAATACCCCGGCTCTTGGCGACGATC
CTCAAGGCTAAGGAAGACCCCGACCACAAGATTATCGTCTTCTTCGTGGC
CGCGAGGATCCTGCACGCCGAGCTTTTCACCCAGATGGGAGTAGACGTGC
TCGAGACCCACTCGCGAAAGTCTCAAGCGGCCCGAACCCGCGTCGCGGAG
GCCTTCCGCAACGGCAAGGGGCAGATCATGTTCACCAGTGATGTCTCGGC
GAGAGGGATGGACTACCCCGACGTGTCTCTCGTCATTCAGGTGGGGGTGT
TCTCGTAG