mRNA_Ecto-sp13_S_contig15151.3883.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15151.3883.1
Unique NamemRNA_Ecto-sp13_S_contig15151.3883.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15151.3883.1 vs. uniprot
Match: D7G827_ECTSI (40S ribosomal protein S6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G827_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 4.180e-103
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 1 
Query:    1 MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKEDDVRKYVIARKFEKKGKTVTKRPNIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYA 483
            MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKG+QDIPGLTDAPVPRRLGPKRANNIRKLFNLGK+DDVRKYVIARKFEKKGKTVTKRP+IQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYA
Sbjct:   49 MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYA 209
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BLAST of mRNA_Ecto-sp13_S_contig15151.3883.1 vs. uniprot
Match: A0A836CDZ2_9STRA (40S ribosomal protein S6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ2_9STRA)

HSP 1 Score: 252 bits (643), Expect = 2.990e-82
Identity = 130/167 (77.84%), Postives = 143/167 (85.63%), Query Frame = 1 
Query:    1 MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKEDDVRKYVIARKFEKKGKTVTKRPNIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYARCVIMR 501
            +FRISGGNDKQGFPMKQGVL  +RVRLLL KG+SCYR RR+GERKRKSVRGCIV +DLAVLNLV+ KKG+ ++PGLTD  VPRRLGPKRAN IRKLFNL KEDDVRKYVIARKFEKKGKTVTKRP IQRLITP +LQR R RA+ KK AQ KS+ DA+EY R    R
Sbjct:   49 VFRISGGNDKQGFPMKQGVLCNHRVRLLLSKGLSCYRPRRKGERKRKSVRGCIVGSDLAVLNLVIVKKGEGEVPGLTDVTVPRRLGPKRANKIRKLFNLSKEDDVRKYVIARKFEKKGKTVTKRPKIQRLITPAKLQRTRRRASLKKQAQVKSKADAAEYGRLYAQR 215
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BLAST of mRNA_Ecto-sp13_S_contig15151.3883.1 vs. uniprot
Match: A0A7S2RIP4_9STRA (40S ribosomal protein S6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIP4_9STRA)

HSP 1 Score: 236 bits (601), Expect = 6.950e-76
Identity = 125/169 (73.96%), Postives = 141/169 (83.43%), Query Frame = 1 
Query:    1 MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKEDDVRKYVIARKFEKK-GKTVTKRPNIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYARCVIMRS 504
            +FRISGGNDKQGFPMKQGVLS  RVRLLLHKG SCYRQR+ GERKRKSVRGCIV +DLAVLNLVVTKKGD +I GLTDA VPRRLGPKRA+ IR+LFNL KEDDVRK V+ R FE K GKTVTK P IQRL+TP+ LQRKRAR AAK  A  K++ +A+EY++    R+
Sbjct:   49 VFRISGGNDKQGFPMKQGVLSNTRVRLLLHKGASCYRQRKTGERKRKSVRGCIVGSDLAVLNLVVTKKGDAEIEGLTDASVPRRLGPKRASKIRQLFNLDKEDDVRKVVVRRSFENKAGKTVTKSPKIQRLVTPLTLQRKRARKAAKVAAVEKARTEAAEYSKLRAQRA 217
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BLAST of mRNA_Ecto-sp13_S_contig15151.3883.1 vs. uniprot
Match: F0YLS6_AURAN (40S ribosomal protein S6 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLS6_AURAN)

HSP 1 Score: 225 bits (573), Expect = 1.320e-71
Identity = 124/168 (73.81%), Postives = 134/168 (79.76%), Query Frame = 1 
Query:    1 MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKEDDVRKYVIARKFE-KKGKTVTKRPNIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYARCVIMR 501
            +FRI+GGNDKQGFPMKQGVL  +RVRLLL  G SCYRQRR GERKRKSVRGCIV ADLAVLNLVV K+GD DI GLTD PV  RLGPKRAN IRKLF L K+DDVRKYVIARKFE KKGK+VTK P IQRLITP+ LQRKR R   K  A  K++ +A EY R   MR
Sbjct:   49 VFRITGGNDKQGFPMKQGVLCNHRVRLLLRAGASCYRQRRAGERKRKSVRGCIVGADLAVLNLVVVKQGDADIEGLTDTPVAVRLGPKRANKIRKLFALTKDDDVRKYVIARKFENKKGKSVTKAPKIQRLITPLCLQRKRDRKRVKMAAITKAKAEAVEYNRVKTMR 216
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BLAST of mRNA_Ecto-sp13_S_contig15151.3883.1 vs. uniprot
Match: W7TEA2_9STRA (40S ribosomal protein S6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEA2_9STRA)

HSP 1 Score: 221 bits (564), Expect = 2.880e-70
Identity = 115/163 (70.55%), Postives = 135/163 (82.82%), Query Frame = 1 
Query:    1 MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKEDDVRKYVIARKFE-KKGKTVTKRPNIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAR 486
            +F+ISGGNDKQGFPMKQGVL+  RVRLLL KG+SCYR RR+GERKRKSVRG IV  DL+VLNLV+ K+G++D+ GLTD+ VPRRLGPKRANNIRKLFNL K+ DV  Y + RKFE KKGKTV K+P IQRLITP+RLQ KR R  AKK A  K++ +A+EY R
Sbjct:   49 VFKISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGAIVGPDLSVLNLVLVKRGEEDVVGLTDSAVPRRLGPKRANNIRKLFNLSKDADVTTYPVERKFENKKGKTVVKKPKIQRLITPLRLQHKRRRLEAKKAATTKAKAEAAEYHR 211
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BLAST of mRNA_Ecto-sp13_S_contig15151.3883.1 vs. uniprot
Match: A0A7S0LPA9_9EUKA (40S ribosomal protein S6 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LPA9_9EUKA)

HSP 1 Score: 220 bits (561), Expect = 7.950e-70
Identity = 114/167 (68.26%), Postives = 132/167 (79.04%), Query Frame = 1 
Query:    1 MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKEDDVRKYVIARKFEKKGKTVTKRPNIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYARCVIMR 501
            +FRISGGNDKQGFPMKQGVL+  RVRLLL +GVSCYR RR GERKRKSVRGCIV +DLAVLNLV+ KKGD +I G TD  +P+RLGPKRA+ IR LFNL K DDVRKYVIAR FEKKGKT+TKRP IQRL+TP+ ++RK+ R    K A   S+ +A+ Y   V  R
Sbjct:   49 IFRISGGNDKQGFPMKQGVLTNTRVRLLLKEGVSCYRARRVGERKRKSVRGCIVGSDLAVLNLVIIKKGDNEIEGFTDVSIPKRLGPKRASKIRNLFNLTKADDVRKYVIARTFEKKGKTITKRPKIQRLVTPVTIRRKKQREVKAKKALENSKAEAAAYTALVHKR 215
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BLAST of mRNA_Ecto-sp13_S_contig15151.3883.1 vs. uniprot
Match: A0A6S8WE49_9STRA (40S ribosomal protein S6 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8WE49_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.800e-69
Identity = 117/168 (69.64%), Postives = 134/168 (79.76%), Query Frame = 1 
Query:    1 MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKEDDVRKYVIARKF-EKKGKTVTKRPNIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYARCVIMR 501
            +FRISGGNDKQGFPM+QG+L+  RVRLL+ KG  CYRQRR GERKRKSVRGCIV  D+AVLNLVVTK GD DIPGLTD  VPRRLGPKRANNIRKLFNL K+DDVR+YVIAR+F  KKG  V K P IQRLITP+ LQRKRA  A K  +  +++ +A+ Y + V  R
Sbjct:   18 IFRISGGNDKQGFPMRQGILTNTRVRLLMQKGHKCYRQRRTGERKRKSVRGCIVGQDIAVLNLVVTKIGDNDIPGLTDDSVPRRLGPKRANNIRKLFNLTKDDDVRQYVIAREFTNKKGVQVRKAPKIQRLITPLTLQRKRAIKAKKMKSVLRNKDEAAAYRKVVAQR 185
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BLAST of mRNA_Ecto-sp13_S_contig15151.3883.1 vs. uniprot
Match: A0A7S3ZJK9_9STRA (40S ribosomal protein S6 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJK9_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.960e-68
Identity = 119/163 (73.01%), Postives = 127/163 (77.91%), Query Frame = 1 
Query:    1 MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKEDDVRKYVIARKFEKK-GKTVTKRPNIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAR 486
            +FRISGGNDKQGFPMKQGVL  +RV+LLL  G SCYRQRR GERKRKSVRGC+V  DLAVLNLVV K+GD +I GLTD  VP RLGPKRAN IRKLF L KEDDVRKYVI RKF KK GK VTK P IQRLITPI LQRKR     K    AK ++DA EY R
Sbjct:   49 VFRISGGNDKQGFPMKQGVLCNHRVKLLLRAGASCYRQRRSGERKRKSVRGCVVGPDLAVLNLVVVKQGDAEIEGLTDTQVPVRLGPKRANKIRKLFALSKEDDVRKYVIRRKFTKKNGKEVTKAPKIQRLITPIMLQRKRDMKRKKMAQVAKVKKDAEEYHR 211
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BLAST of mRNA_Ecto-sp13_S_contig15151.3883.1 vs. uniprot
Match: A0A1A7Y5M1_9TELE (40S ribosomal protein S6 n=8 Tax=Clupeocephala TaxID=186625 RepID=A0A1A7Y5M1_9TELE)

HSP 1 Score: 216 bits (549), Expect = 6.770e-68
Identity = 116/168 (69.05%), Postives = 133/168 (79.17%), Query Frame = 1 
Query:    1 MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKEDDVRKYVIARKFEKKGKTV-TKRPNIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYARCVIMR 501
            M RISGGNDKQGFPMKQGVL+  RVRLLL KG SCYR RR GERKRKSVRGCIV A+L+VLNLV+ KKG++DIPGLTD+ VPRRLGPKRA+ IRKLFNL KEDDVR+YV+ R   K+GK   TK P IQRL+TP  LQ KR R A KK    K++ +ASEYA+ +  R
Sbjct:   49 MVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIIKKGEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYVVRRPLSKEGKKARTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKR 216
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BLAST of mRNA_Ecto-sp13_S_contig15151.3883.1 vs. uniprot
Match: A0A137PCW8_CONC2 (40S ribosomal protein S6 n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PCW8_CONC2)

HSP 1 Score: 214 bits (544), Expect = 2.580e-67
Identity = 113/163 (69.33%), Postives = 130/163 (79.75%), Query Frame = 1 
Query:    1 MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKEDDVRKYVIARKFEKKG---KTVTKRPNIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEY 480
            +FR++GGNDKQGFPMKQGVL  NR RLLL KG SCYR R+ GERKRKSVRGCIV +DLAVL+LVV K+G+Q+I GLTD  VP+RLGPKRAN IRK+FNL KEDDVRKYVI R+ + K    K  TK P IQRL+TP RLQRKRA  AAKK   A+S+  A+EY
Sbjct:   49 VFRVTGGNDKQGFPMKQGVLLPNRTRLLLSKGHSCYRPRKTGERKRKSVRGCIVGSDLAVLSLVVVKQGEQEIAGLTDTVVPKRLGPKRANKIRKMFNLSKEDDVRKYVIRREVQPKDADKKPYTKAPKIQRLVTPQRLQRKRAEVAAKKTRAARSKAQAAEY 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15151.3883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G827_ECTSI4.180e-10398.1440S ribosomal protein S6 n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CDZ2_9STRA2.990e-8277.8440S ribosomal protein S6 n=1 Tax=Tribonema minus T... [more]
A0A7S2RIP4_9STRA6.950e-7673.9640S ribosomal protein S6 n=1 Tax=Rhizochromulina m... [more]
F0YLS6_AURAN1.320e-7173.8140S ribosomal protein S6 n=1 Tax=Aureococcus anoph... [more]
W7TEA2_9STRA2.880e-7070.5540S ribosomal protein S6 n=2 Tax=Monodopsidaceae T... [more]
A0A7S0LPA9_9EUKA7.950e-7068.2640S ribosomal protein S6 n=1 Tax=Coccolithus braar... [more]
A0A6S8WE49_9STRA1.800e-6969.6440S ribosomal protein S6 n=1 Tax=Chaetoceros debil... [more]
A0A7S3ZJK9_9STRA1.960e-6873.0140S ribosomal protein S6 n=1 Tax=Pelagomonas calce... [more]
A0A1A7Y5M1_9TELE6.770e-6869.0540S ribosomal protein S6 n=8 Tax=Clupeocephala Tax... [more]
A0A137PCW8_CONC22.580e-6769.3340S ribosomal protein S6 n=1 Tax=Conidiobolus coro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15151contigEcto-sp13_S_contig15151:1512..2374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score303.5
Seed ortholog evalue6.3e-80
Seed eggNOG ortholog2880.D7G827
Preferred nameRPS6
Model size525
KEGG koko:K02991,ko:K07611,ko:K13022,ko:K14498,ko:K17284
KEGG Pathwayko01521,ko03010,ko03320,ko04016,ko04066,ko04075,ko04150,ko04151,ko04210,ko04214,ko04371,ko04714,ko04910,ko05205,map01521,map03010,map03320,map04016,map04066,map04075,map04150,map04151,map04210,map04214,map04371,map04714,map04910,map05205
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000028,GO:0000075,GO:0000082,GO:0000184,GO:0000278,GO:0000281,GO:0000462,GO:0000910,GO:0000956,GO:0001775,GO:0001776,GO:0001890,GO:0002181,GO:0002252,GO:0002260,GO:0002262,GO:0002263,GO:0002285,GO:0002286,GO:0002309,GO:0002366,GO:0002376,GO:0002520,GO:0002521,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0005938,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006915,GO:0006924,GO:0006955,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007369,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009790,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022605,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030097,GO:0030098,GO:0030099,GO:0030154,GO:0030217,GO:0030218,GO:0030425,GO:0030490,GO:0030587,GO:0030684,GO:0030686,GO:0031929,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032943,GO:0032991,GO:0033036,GO:0033077,GO:0033365,GO:0033500,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0035690,GO:0035770,GO:0036464,GO:0036477,GO:0042098,GO:0042110,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042493,GO:0042592,GO:0042593,GO:0042788,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043029,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0045047,GO:0045184,GO:0045321,GO:0045471,GO:0045786,GO:0045930,GO:0046483,GO:0046649,GO:0046651,GO:0046677,GO:0046700,GO:0046907,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048598,GO:0048608,GO:0048609,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060255,GO:0060548,GO:0061458,GO:0061515,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070227,GO:0070231,GO:0070661,GO:0070727,GO:0070887,GO:0070925,GO:0070938,GO:0070972,GO:0071236,GO:0071310,GO:0071361,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071887,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090702,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097447,GO:0097458,GO:0099120,GO:0099568,GO:0120025,GO:0120038,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1901888,GO:1901889,GO:1903047,GO:1903347,GO:1990904,GO:2000810
Exons2
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2125@1,KOG1646@2759
EC2.7.11.1
Cds size525
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko01002,ko03011,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462806.1313539-CDS-Ecto-sp13_S_contig15151:1511..17331681462806.1313539-CDS-Ecto-sp13_S_contig15151:1511..1733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15151 1512..1733 -
1681462806.1554248-CDS-Ecto-sp13_S_contig15151:2071..23741681462806.1554248-CDS-Ecto-sp13_S_contig15151:2071..2374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15151 2072..2374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15151.3883.1prot_Ecto-sp13_S_contig15151.3883.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15151 1512..2374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15151.3883.1

>prot_Ecto-sp13_S_contig15151.3883.1 ID=prot_Ecto-sp13_S_contig15151.3883.1|Name=mRNA_Ecto-sp13_S_contig15151.3883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
MFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVR
GCIVAADLAVLNLVVTKKGDQDIPGLTDAPVPRRLGPKRANNIRKLFNLG
KEDDVRKYVIARKFEKKGKTVTKRPNIQRLITPIRLQRKRARAAAKKIAQ
AKSQRDASEYARCVIMRSCRGLAL*
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mRNA from alignment at Ecto-sp13_S_contig15151:1512..2374-

Legend: polypeptideCDS
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>mRNA_Ecto-sp13_S_contig15151.3883.1 ID=mRNA_Ecto-sp13_S_contig15151.3883.1|Name=mRNA_Ecto-sp13_S_contig15151.3883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=863bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15151:1512..2374- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCGCATCTCCGGCGGCAACGACAAACAGGGCTTCCCCATGAAGCA
GGGGGTGCTCTCCGCCAACCGCGTGCGCCTCCTTCTCCACAAGGGCGTGT
CGTGCTACCGCCAGCGCCGCCGCGGCGAGCGCAAGAGGAAGTCGGTGCGC
GGCTGCATCGTGGCCGCCGACCTTGCCGTGCTTAACCTCGTGGTGACAAA
GAAGGGGGACCAGGACATCCCCGGGCTCACCGACGCCCCCGTGCCCCGCC
GCCTCGGCCCCAAGCGCGCGAACAACATCCGCAAGCTGTTCAACCTCGGC
AAGGTGAGGAAGGGAGAAGAAGCACCCAGGCTGGCGGTTGAGTCTTGGAG
AGTTGGGTGGCGGCGTGTGCGTGTTGTTGACAATTGCGGTTAAGTGGTTT
GCCGATACCACTGTTTAATGATGGAATGGAATGTTGTGTCAGTGTCCTTC
TGGTGCTTGTCGACCCAACGAGGGACGCTTCAAACTGTGTCCTGTGTCCA
ATGGTGTTTTGGTCGTTCGTAGCAGTGATTGGCGGGTTGGCTTGCCGGTA
CGAGAAGGAAACACTTGTGATTGCCCAAGAAGTACTCCGTTGCTTCGACG
ACACCCCCTCCTAATGGCTGGTGCCGTCTGCTTTTTGTCAGGAGGACGAT
GTGCGCAAGTATGTGATCGCCCGCAAGTTCGAGAAGAAGGGCAAGACCGT
CACCAAGCGCCCCAACATCCAGCGCCTTATCACTCCTATCCGCCTCCAGC
GCAAGCGCGCGCGCGCCGCGGCCAAGAAGATCGCCCAGGCCAAGAGCCAG
CGCGATGCGTCGGAGTACGCCAGGTGCGTCATCATGCGGTCTTGCCGCGG
CTTAGCCTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15151:1512..2374-

>mRNA_Ecto-sp13_S_contig15151.3883.1 ID=mRNA_Ecto-sp13_S_contig15151.3883.1|Name=mRNA_Ecto-sp13_S_contig15151.3883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15151:1512..2374- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCGCATCTCCGGCGGCAACGACAAACAGGGCTTCCCCATGAAGCA
GGGGGTGCTCTCCGCCAACCGCGTGCGCCTCCTTCTCCACAAGGGCGTGT
CGTGCTACCGCCAGCGCCGCCGCGGCGAGCGCAAGAGGAAGTCGGTGCGC
GGCTGCATCGTGGCCGCCGACCTTGCCGTGCTTAACCTCGTGGTGACAAA
GAAGGGGGACCAGGACATCCCCGGGCTCACCGACGCCCCCGTGCCCCGCC
GCCTCGGCCCCAAGCGCGCGAACAACATCCGCAAGCTGTTCAACCTCGGC
AAGGAGGACGATGTGCGCAAGTATGTGATCGCCCGCAAGTTCGAGAAGAA
GGGCAAGACCGTCACCAAGCGCCCCAACATCCAGCGCCTTATCACTCCTA
TCCGCCTCCAGCGCAAGCGCGCGCGCGCCGCGGCCAAGAAGATCGCCCAG
GCCAAGAGCCAGCGCGATGCGTCGGAGTACGCCAGGTGCGTCATCATGCG
GTCTTGCCGCGGCTTAGCCTTGTAG
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