mRNA_Ecto-sp13_S_contig1515.3882.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1515.3882.1
Unique NamemRNA_Ecto-sp13_S_contig1515.3882.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1515.3882.1 vs. uniprot
Match: D7FPH2_ECTSI (UMP-CMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPH2_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.160e-6
Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = -2 
Query:  295 KAMETSEPHSRFLIDGFPRNRDNIEASKQVTDRFVQVWACVAQRVCSTTYVRTLLSGGRQLG 480
            KAMETSEPHSRFLIDGFPRNRDN+E   +       + + +          + LLS G+  G
Sbjct:  243 KAMETSEPHSRFLIDGFPRNRDNMEGWDEAMGDVADIRSVLFLYCPEDVLEKRLLSRGKSSG 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1515.3882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPH2_ECTSI2.160e-646.77UMP-CMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1515contigEcto-sp13_S_contig1515:463..943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size481
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462806.0187466-UTR-Ecto-sp13_S_contig1515:462..4681681462806.0187466-UTR-Ecto-sp13_S_contig1515:462..468Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1515 463..468 +
1681462806.037518-UTR-Ecto-sp13_S_contig1515:777..9431681462806.037518-UTR-Ecto-sp13_S_contig1515:777..943Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1515 778..943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462806.0292633-CDS-Ecto-sp13_S_contig1515:468..7771681462806.0292633-CDS-Ecto-sp13_S_contig1515:468..777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1515 469..777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1515.3882.1prot_Ecto-sp13_S_contig1515.3882.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1515 469..777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1515.3882.1

>prot_Ecto-sp13_S_contig1515.3882.1 ID=prot_Ecto-sp13_S_contig1515.3882.1|Name=mRNA_Ecto-sp13_S_contig1515.3882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MGGSSQHALGGSTGGQGTNCRIFVRQNYGWGSARSWKLGTKDTVQIICHV
APVVRTTLVPTAGSGCKHHLKNRPRVLEGIVFLWWGPSQGCSASPQAQLS
PP*
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mRNA from alignment at Ecto-sp13_S_contig1515:463..943+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1515.3882.1 ID=mRNA_Ecto-sp13_S_contig1515.3882.1|Name=mRNA_Ecto-sp13_S_contig1515.3882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1515:463..943+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAACATGGGGGGCAGCAGTCAACACGCCTTGGGAGGCAGTACTGGTGG
TCAAGGAACAAATTGCCGTATATTTGTCAGGCAAAATTACGGGTGGGGAA
GTGCGCGATCATGGAAGCTTGGCACAAAAGACACAGTACAAATCATATGT
CATGTGGCTCCGGTAGTCCGCACAACTTTAGTACCGACCGCTGGATCAGG
TTGTAAGCACCATCTCAAGAATCGTCCCCGGGTTTTGGAGGGAATCGTGT
TCTTGTGGTGGGGACCGTCTCAAGGGTGCTCGGCGTCCCCTCAAGCCCAA
CTGTCGCCCCCCTGACAGCAGCGTACGTACGTACGTTGTGCTGCATACGC
GTTGTGCTACGCAAGCCCATACTTGAACGAACCGGTCTGTTACTTGCTTG
CTTGCCTCGATATTGTCCCTGTTCCGCGGGAAGCCGTCGATGAGGAACCT
CGAGTGAGGCTCGCTCGTCTCCATTGCCTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1515:463..943+

>mRNA_Ecto-sp13_S_contig1515.3882.1 ID=mRNA_Ecto-sp13_S_contig1515.3882.1|Name=mRNA_Ecto-sp13_S_contig1515.3882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1515:463..943+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGGCAGCAGTCAACACGCCTTGGGAGGCAGTACTGGTGGTCAAGG
AACAAATTGCCGTATATTTGTCAGGCAAAATTACGGGTGGGGAAGTGCGC
GATCATGGAAGCTTGGCACAAAAGACACAGTACAAATCATATGTCATGTG
GCTCCGGTAGTCCGCACAACTTTAGTACCGACCGCTGGATCAGGTTGTAA
GCACCATCTCAAGAATCGTCCCCGGGTTTTGGAGGGAATCGTGTTCTTGT
GGTGGGGACCGTCTCAAGGGTGCTCGGCGTCCCCTCAAGCCCAACTGTCG
CCCCCCTGA
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