mRNA_Ecto-sp13_S_contig15145.3880.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15145.3880.1
Unique NamemRNA_Ecto-sp13_S_contig15145.3880.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15145.3880.1 vs. uniprot
Match: A0A6H5KYH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH5_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 2.430e-88
Identity = 299/316 (94.62%), Postives = 303/316 (95.89%), Query Frame = 1 
Query:    1 YAEPGQKKPKYCFLHKKPGHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRPMWCPDHRPPGSFDVKTSRCQEPSCLKHPRHDNRSTRAYRQIALARVQCYGYDRDRIRRRCRLHKLDDMVDVKSPRCEMAGCRKQPCCGFPGLKPRFCSEHKQDGMLNLKVPYTRCMST 948
            Y EPGQKKPKYCFLHKKPG IDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EGRPMWCPDHRPPGSFDVKTSRCQEPSCLKHPRHD RST+A+RQI  ARVQ      DRIRRRCRLHKLDDMVDVKSPRCEMAGCRKQPCCGFPGLKPRFCSEHKQDGMLNLKVPY RC++T
Sbjct:   16 YGEPGQKKPKYCFLHKKPGQIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRPMWCPDHRPPGSFDVKTSRCQEPSCLKHPRHDTRSTKAHRQIVSARVQW-----DRIRRRCRLHKLDDMVDVKSPRCEMAGCRKQPCCGFPGLKPRFCSEHKQDGMLNLKVPYRRCLNT 326
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BLAST of mRNA_Ecto-sp13_S_contig15145.3880.1 vs. uniprot
Match: D7FMP7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP7_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 3.720e-40
Identity = 247/313 (78.91%), Postives = 247/313 (78.91%), Query Frame = 1 
Query:    1 YAEPGQKKPKYCFLHKKPGHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRPMWCPDHRPPGSFDVKTSRCQEPSCLKHPRHDNRSTRAYRQIALARVQCYGYDRDRIRRRCRLHKLDDMVDVKSPRCEMAGCRKQPCCGFPGLKPRFCSEHKQDGMLNLKVPYTRC 939
            YAEPGQKKPKYCFLHKKPGHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EGRPMWCPD                                            GYDRDRIRRRCRLHKLDDMV                 CGFPGLKPRFCSEHKQDGMLNLK    RC
Sbjct:   16 YAEPGQKKPKYCFLHKKPGHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRPMWCPDXXXXXXXXXXXXXXXX-------------------XXXXXXXXXGYDRDRIRRRCRLHKLDDMVXXXXXXXXXXXXXXXXXCGFPGLKPRFCSEHKQDGMLNLKTRAFRC 309
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BLAST of mRNA_Ecto-sp13_S_contig15145.3880.1 vs. uniprot
Match: D7FQ52_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ52_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.870e-5
Identity = 28/62 (45.16%), Postives = 31/62 (50.00%), Query Frame = 1 
Query:  754 DRIRRRCRLHKLDDMVDVKSPRCEMAGCRKQPCCGFPGLKPRFCSEHKQDGMLNLKVPYTRC 939
            DR+RRRCRL                       CCG  G K RFCSEHKQ+GM+NLK    RC
Sbjct:  249 DRVRRRCRLXXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLKTRAFRC 310
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15145.3880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KYH5_9PHAE2.430e-8894.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMP7_ECTSI3.720e-4078.91EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FQ52_ECTSI1.870e-545.16EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ52... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15145contigEcto-sp13_S_contig15145:315..4244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score161.0
Seed ortholog evalue9.3e-37
Seed eggNOG ortholog2880.D7FMP7
Model size969
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs29ZCP@1,2RXW0@2759
Cds size969
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15145.3880.1prot_Ecto-sp13_S_contig15145.3880.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15145 315..4244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462805.9332554-CDS-Ecto-sp13_S_contig15145:314..5461681462805.9332554-CDS-Ecto-sp13_S_contig15145:314..546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15145 315..546 -
1681462805.9452834-CDS-Ecto-sp13_S_contig15145:682..9431681462805.9452834-CDS-Ecto-sp13_S_contig15145:682..943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15145 683..943 -
1681462805.9552646-CDS-Ecto-sp13_S_contig15145:1874..20261681462805.9552646-CDS-Ecto-sp13_S_contig15145:1874..2026Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15145 1875..2026 -
1681462805.965172-CDS-Ecto-sp13_S_contig15145:2567..26931681462805.965172-CDS-Ecto-sp13_S_contig15145:2567..2693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15145 2568..2693 -
1681462805.9747927-CDS-Ecto-sp13_S_contig15145:3691..38091681462805.9747927-CDS-Ecto-sp13_S_contig15145:3691..3809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15145 3692..3809 -
1681462805.9844294-CDS-Ecto-sp13_S_contig15145:4164..42441681462805.9844294-CDS-Ecto-sp13_S_contig15145:4164..4244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15145 4165..4244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15145.3880.1

>prot_Ecto-sp13_S_contig15145.3880.1 ID=prot_Ecto-sp13_S_contig15145.3880.1|Name=mRNA_Ecto-sp13_S_contig15145.3880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=323bp
YAEPGQKKPKYCFLHKKPGHIDVRNKRCEVPNCEIRPHYGYDGEAPRFCA
QHRAEGMHNLRSRRCQSEGCVRYASCGHAGNPPVFCGAHKTIGMVNLIGR
RCAVDSCETYASYGVTGEKARYCAKHKGNNMVNLTVKHCEFSGCVTQPSF
NYAGQRKARFCARHRLEHMVDVLDRHCAQHGCDRQPIYGQAGEKEGRPMW
CPDHRPPGSFDVKTSRCQEPSCLKHPRHDNRSTRAYRQIALARVQCYGYD
RDRIRRRCRLHKLDDMVDVKSPRCEMAGCRKQPCCGFPGLKPRFCSEHKQ
DGMLNLKVPYTRCMSTAPLLVE*
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mRNA from alignment at Ecto-sp13_S_contig15145:315..4244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15145.3880.1 ID=mRNA_Ecto-sp13_S_contig15145.3880.1|Name=mRNA_Ecto-sp13_S_contig15145.3880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15145:315..4244- (Ectocarpus species13 EcNAP12_S_4_19m)
TACGCGGAACCGGGGCAGAAGAAGCCCAAGTATTGCTTCCTCCACAAGAA
GCCCGGCCACATCGACGTCCGCAACAAGAGGTGGGCGTGGTATATCCCTC
CCTCCCGGGCCAACGGTTCTCCTGCGTTGTGCCTTGCCTTCTGGGGCAGA
GAGTATACTTCAGCAAGAGAGCCGCCGCCACTGCTGTAAGCATGGTGGCA
CATACGAGAGATGAAAAATATTCAAAACCTTTCACATGCGCTCTCCTGGC
CGTTGCCTAATTCAAAAAGACGCCGCCCTTCTTGGAGCTCTTCATCACTG
CGGCCCCTGCTCCGCCCACACGCTCTTTTTTCTGCTGCTGCTGCTGCTGC
TGCTACTGCTCGCACGCGCGGCAATTTTTTCGGGCTCTCGCTCCATCCCT
CGTGGCGTGTGGTTGTATTTTACATACATTCACAGGTGTGAAGTGCCCAA
CTGCGAGATTCGGCCTCACTACGGTTACGATGGAGAGGCGCCTCGGTTTT
GCGCGCAGCACCGGGCGGAGGGCATGCACAACCTCCGCAGCCGCCGTTGC
CAGGTGTGCGTGTGTTACTAACCCTAACCCTATGAAGTTTGTTGTAGCTT
TCTGCTCTCATGCTGCTGCCTCCTTTGTTGTCGTGCGTGAGTTGTGGTGT
GTAGTTATTGATCGTGTTTTTTTCGTCGGGTGGAAGACCAAACCCAAGGC
GGCGTGTTTGTGTGACCGAGTCACTGGTACAATTCAGTGCAAACGCTTGG
TACAGACTCAATATGTACGCCAAGTATCCGGCCGGCTTTTCTTCCTTGCA
CTCACCATTCAAGAATCAAACGCATCCCCTTCGACTACCAGGGTTTTCTC
TCGAACGGGTAGTCTCGTCCTGTGTCGTAAGTATTTCTGTACAAAAGCCA
AGTACTTTTCAAGCGCTCGTTCCTCCTCTCTCCCTCTAACGGTTCCCGGC
TTTGTGTACGCGAAACAGACAACACCGGATCGAGTATTTTTTTTCATGTT
TAGTCATGCTTGGCAGGAGGACATAACGGGTATGCCATGTGGGTGCCGTA
TCTATATTTCAACTTTGTTGTCTCGCATGCGAAGGCAAGCACCGCAGGAG
GGATGGGTACGGTGAGGAGCCCTTCTGTGTGACCCCCGATCACAGCTCCT
GACCCGGCAGAAATGGACCACCTACGCAGGAGTTTATGAGTATGTAAAAA
AATAACAGGGAGGGGGCACGCAGACCCTATCCCTAACCCTAACCCTTAAG
CACAGATTCAATGCTTTATCCCATATATTTGCTTAATCAACTTTGCTGCG
TAGACTACTGGGAAGAACTGCTGTGCTGATGAAAAGTGATGAACAAAAAA
AAATAACTTGCGATGGAGTGAATCTGTCTTTATTTTTTTGGTGCCTGCAG
AATATGCTTTGTTTGTTATACTCTGAAGTCGAGGCACACCCGCGTCAAAA
CCTGCGATATTTTGCATGTGGGGCTGCGATTTGAGAGGACATCTTTGATT
TGTCCAACCGATGTTTCCTTCTCTTGTGTGTGTGTGTGTTTTTTTTTCCA
GAGCGAGGGCTGCGTGAGGTACGCCTCCTGCGGTCACGCTGGAAACCCGC
CCGTGTTCTGCGGCGCGCACAAAACCATTGGCATGGTCAACCTTATCGGA
CGCCGCTGCGCCGTTGATTCGTGCGAGGTATGTACATTCCTAAATGGTAC
CATGATGTTGACATGTTCTTTCGGGTGTTGCTCTTTTATTTTTTTTTGTG
ATAGGTGAATTATCGAGCCGTTGTGTGCCGACGAACAGCACGAACGGCGT
AGATGACGGCGCCAACGCGTAGTGTACCGCTCTCGCTCTCTCCGTGTGGT
GAAGCGTCACGTCTGCGGTCCGGGGGCGGGTGCTCGCCCAGACTCGTCCT
TCTCTCTCCAATATACACCGGAAAGCTATTTAATAGCCGAAAGAGAGATG
GTCGAAATCTCCGGGGGGGTTTTGTTTCGCTGCTGCTGGCTGTCCTGAAC
CCCTGCATGGTATTTTCCCACCGGTTGAGACCCCGTCTGGGGCGTGTACG
GAACGGTGTCGTCGTCTGACCCCCAGGTTTGACGGGGCGGATGAAAATGT
CGATAACAACAAAATATACCTCGTAGTTTTTTAGGTCGTTAGACTCAAGA
ACGAAATACATCGTTAAAAACTACGTGGTAATAGATATTCCCACCCCAAC
GTTTTTCTTTGTCGTTAGACGTACGCGAGCTACGGCGTCACCGGAGAGAA
GGCGAGATACTGCGCAAAGCACAAGGGCAACAACATGGTCAACCTCACCG
TGAAGCACTGCGAGTTCTCCGGATGCGTAACCCAGCCCAGCTTCAACTAC
GCGGGTCAGAGGAAGGCCAGGTAACGGTACGAGTGTGGGTGCCGTTCATT
TGATTGGCATCGACCGCCGTAGCCGGCGATTGGTTGATGAGCAGGCGTCA
GCCTTGTAGAGGCGGGGCGACAGCAGTTCGGGCGAACACGTGGCCTACAC
AGGGGACGTATGTGTGCATTGCCTTGGTTAGTGTCAGAGGCGCTGTTCGG
CTGGCCAATGAGAGGACGTGAGTCACACAGCGGGACATGCGACGTGAACA
CGCTTTCTTGTGAGGGGGGGGGGGGGTTAAGCGGCAGGGTCCAGTCTCCA
GATTCAGATTCAGAGTGTTTGCAAAAGGAAAGCATGAAACGCCGTTACGC
AGCAGCCTTGTATTTTACGTTTGTCGTGGAAAAGTGTTCCACTTCGAGTA
TTTTAGTAGCCATGAGATTTTACTCGTGTCACGAGCGCGTAGGCATGTGG
GTTGCAAAAGGAAAACATGAAACGTCGTTACGCAGCAGCGTTGTGTTTTG
CGTTTGTCGTGGAAAAGTGTTCCACTTCGAGTATTTTAGTAGCCATGAGA
TTTTACTCGTGTCACGAGCGCGTAGGCTTATTGATTGCAAAAGGAAAACA
TGAAACGCCGTTACGCGACAGCGTTGTGTTTTGCGTTTGTCGTGGAAAAG
TGTTCCACTTCGAGTATTTTAGTAGCCATGAGATTTTACTCGTGTCACGA
GCGCGCAGGCGTGTTGCCTTCCCGACCCTGTTGTCCTTCGAGCCTAGCAT
GGGTCGTGTTTCTTCATGAGCATCTTGCGTGCGCCTTCGCCAAGAGGAAC
CTGTATTATCGTGCGCAGTGTATGCACCCCCCCCCCCCCCGCTCCCTCTA
CCCTTGTCTGTATCCCCGTGTTTTCCTTACCCCCATTCATGACCACCCCT
TTAACCTTCCTTTCCACCGCAATACCCATAAACCCACTGAATTCCCGCAA
GGTTCTGCGCGAGGCATCGCCTGGAGCACATGGTGGACGTTCTCGACCGC
CACTGCGCTCAGCACGGGTGCGATCGCCAGCCCATCTACGGCCAGGCCGG
GGAAAAGGAGGGCCGCCCGATGTGGTGCCCCGACCACCGCCCGCCGGGGA
GCTTCGACGTCAAGACCTCCCGCTGCCAGGAGCCCTCCTGCCTCAAGCAC
CCAAGGCACGACAATCGCTCGACAAGAGCATATCGGCAGATTGCTTTGGC
AAGAGTGCAATGGTTGCGAGGACTTGGTTTAATTACTTGCTACCAGGGCA
ACAGCAGTGAGCATCTCAACGTGGCAATAGGTATTCTTATGTCAACCAGT
ATCCCCTCCCTCCTCCCCCCGCCTGCCTCGGAAAAACGCCTTTTACAGCT
ACGGTTACGACAGGGACCGCATCCGCAGGCGTTGCCGGCTCCACAAGCTG
GACGACATGGTGGACGTCAAGAGCCCTCGCTGCGAAATGGCCGGCTGCCG
GAAGCAACCCTGCTGCGGCTTCCCGGGACTTAAGCCGCGCTTCTGCTCGG
AGCACAAGCAAGACGGCATGCTCAACCTCAAGGTACCGTACACACGTTGC
ATGAGTACTGCCCCCCTCCTGGTAGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15145:315..4244-

>mRNA_Ecto-sp13_S_contig15145.3880.1 ID=mRNA_Ecto-sp13_S_contig15145.3880.1|Name=mRNA_Ecto-sp13_S_contig15145.3880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15145:315..4244- (Ectocarpus species13 EcNAP12_S_4_19m)
TACGCGGAACCGGGGCAGAAGAAGCCCAAGTATTGCTTCCTCCACAAGAA
GCCCGGCCACATCGACGTCCGCAACAAGAGGTGTGAAGTGCCCAACTGCG
AGATTCGGCCTCACTACGGTTACGATGGAGAGGCGCCTCGGTTTTGCGCG
CAGCACCGGGCGGAGGGCATGCACAACCTCCGCAGCCGCCGTTGCCAGAG
CGAGGGCTGCGTGAGGTACGCCTCCTGCGGTCACGCTGGAAACCCGCCCG
TGTTCTGCGGCGCGCACAAAACCATTGGCATGGTCAACCTTATCGGACGC
CGCTGCGCCGTTGATTCGTGCGAGACGTACGCGAGCTACGGCGTCACCGG
AGAGAAGGCGAGATACTGCGCAAAGCACAAGGGCAACAACATGGTCAACC
TCACCGTGAAGCACTGCGAGTTCTCCGGATGCGTAACCCAGCCCAGCTTC
AACTACGCGGGTCAGAGGAAGGCCAGGTTCTGCGCGAGGCATCGCCTGGA
GCACATGGTGGACGTTCTCGACCGCCACTGCGCTCAGCACGGGTGCGATC
GCCAGCCCATCTACGGCCAGGCCGGGGAAAAGGAGGGCCGCCCGATGTGG
TGCCCCGACCACCGCCCGCCGGGGAGCTTCGACGTCAAGACCTCCCGCTG
CCAGGAGCCCTCCTGCCTCAAGCACCCAAGGCACGACAATCGCTCGACAA
GAGCATATCGGCAGATTGCTTTGGCAAGAGTGCAATGCTACGGTTACGAC
AGGGACCGCATCCGCAGGCGTTGCCGGCTCCACAAGCTGGACGACATGGT
GGACGTCAAGAGCCCTCGCTGCGAAATGGCCGGCTGCCGGAAGCAACCCT
GCTGCGGCTTCCCGGGACTTAAGCCGCGCTTCTGCTCGGAGCACAAGCAA
GACGGCATGCTCAACCTCAAGGTACCGTACACACGTTGCATGAGTACTGC
CCCCCTCCTGGTAGAGTAG
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