mRNA_Ecto-sp13_S_contig15130.3873.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15130.3873.1
Unique NamemRNA_Ecto-sp13_S_contig15130.3873.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15130.3873.1 vs. uniprot
Match: A0A6H5KLQ4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ4_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 2.450e-105
Identity = 195/269 (72.49%), Postives = 202/269 (75.09%), Query Frame = 1 
Query:    1 MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTVIKHLRNKHSASVRNFSSGSTRNGQGQQASSRDGGGGEHGAAGMEGRPAAAFSTTLDTGMGRFGGLSAGLVLRLGPADFVPHHHRLYPTLAEFPPDTLAQRRDASDGFSCQQQQQQAYDDPNR-----------HAGESDEVDVPASTIAPRHGGNGGASSPAAAADDAREEIRAVPYRDIASTAATGHSGALMAILLSRLAAVNPGDAYTGDTPASAAAAAGG 774
            MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTVI+ LRNK SASV   SSGS+RNGQGQQASSRD G GEH  A MEGRPAAAFSTTLDT MGRFGGLSAGLVLRLG ADF P  HRLYPTLAEFPPDTLA RRDAS GFSCQ                       HAGESDE +                       DDAREEIRAVPYRD+A+T A GHSGAL+AILLSRLAAVNPGD YTGDTPA+AAAAAGG
Sbjct:    1 MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTVIQQLRNKSSASVLTCSSGSSRNGQGQQASSRDSGDGEHEPAAMEGRPAAAFSTTLDTSMGRFGGLSAGLVLRLGAADFAPPRHRLYPTLAEFPPDTLALRRDASGGFSCQXXXXXXXXXXXXXXXXXXXXXKWHAGESDEGEPXXXXXXXXXXXXXXXXXXXX--DDAREEIRAVPYRDMATTVAAGHSGALVAILLSRLAAVNPGDGYTGDTPAAAAAAAGG 267
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BLAST of mRNA_Ecto-sp13_S_contig15130.3873.1 vs. uniprot
Match: D8LSH9_ECTSI (Protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH9_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.820e-9
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:  643 IASTAATGHSGALMAILLSRLAAVNPGDAYTGDTPASA 756
            +A+TAATGHSGALMAILLSRLAAVNPGDAYTGDTPA+A
Sbjct:    1 MATTAATGHSGALMAILLSRLAAVNPGDAYTGDTPAAA 38
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15130.3873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLQ4_9PHAE2.450e-10572.49Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LSH9_ECTSI3.820e-992.11Protein kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15130contigEcto-sp13_S_contig15130:8..781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size774
Hectar predicted targeting categoryother localisation
Exons1
Cds size774
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462805.5122974-CDS-Ecto-sp13_S_contig15130:7..7811681462805.5122974-CDS-Ecto-sp13_S_contig15130:7..781Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15130 8..781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15130.3873.1prot_Ecto-sp13_S_contig15130.3873.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15130 8..781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15130.3873.1

>prot_Ecto-sp13_S_contig15130.3873.1 ID=prot_Ecto-sp13_S_contig15130.3873.1|Name=mRNA_Ecto-sp13_S_contig15130.3873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp
MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTVIKHL
RNKHSASVRNFSSGSTRNGQGQQASSRDGGGGEHGAAGMEGRPAAAFSTT
LDTGMGRFGGLSAGLVLRLGPADFVPHHHRLYPTLAEFPPDTLAQRRDAS
DGFSCQQQQQQAYDDPNRHAGESDEVDVPASTIAPRHGGNGGASSPAAAA
DDAREEIRAVPYRDIASTAATGHSGALMAILLSRLAAVNPGDAYTGDTPA
SAAAAAGG
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mRNA from alignment at Ecto-sp13_S_contig15130:8..781-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15130.3873.1 ID=mRNA_Ecto-sp13_S_contig15130.3873.1|Name=mRNA_Ecto-sp13_S_contig15130.3873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15130:8..781- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTTGCTGGCACTGCGCCCAAGCCATCGGGGCGTGCGGCTGCACAC
TTTCGAGCCAGAGGACAGGGGCTACACCTCCACGCCGACTAAAATCGGAG
GCCACTGTCTAGATCATGTGCGGAACGGGTTCACCGTGATAAAGCACCTC
AGAAATAAACACTCGGCGTCCGTGCGAAACTTCAGCAGCGGCAGCACCAG
GAACGGGCAAGGCCAGCAGGCCAGCAGCAGAGACGGCGGCGGCGGAGAGC
ATGGGGCAGCAGGGATGGAAGGGAGGCCCGCGGCGGCGTTTTCGACAACC
CTTGATACCGGCATGGGAAGGTTTGGCGGCCTCTCCGCCGGGTTGGTGCT
GAGGCTCGGTCCCGCTGACTTCGTGCCGCACCACCACCGGCTGTACCCAA
CGCTCGCAGAATTCCCACCGGACACGCTGGCACAGAGAAGGGACGCAAGC
GATGGATTTTCCTGCCAGCAGCAACAGCAGCAGGCTTATGATGATCCCAA
TCGGCACGCCGGCGAAAGCGATGAAGTTGACGTGCCAGCTTCGACGATTG
CGCCGCGCCACGGCGGCAACGGGGGAGCCAGCTCCCCCGCAGCGGCGGCG
GACGATGCGAGAGAAGAGATCAGAGCGGTGCCCTACCGCGACATTGCATC
GACTGCCGCGACGGGGCACAGCGGCGCCCTCATGGCGATCCTGCTGTCCA
GGCTCGCCGCCGTCAACCCCGGTGATGCGTACACGGGTGACACTCCCGCC
TCCGCCGCTGCAGCTGCCGGTGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15130:8..781-

>mRNA_Ecto-sp13_S_contig15130.3873.1 ID=mRNA_Ecto-sp13_S_contig15130.3873.1|Name=mRNA_Ecto-sp13_S_contig15130.3873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15130:8..781- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTTGCTGGCACTGCGCCCAAGCCATCGGGGCGTGCGGCTGCACAC
TTTCGAGCCAGAGGACAGGGGCTACACCTCCACGCCGACTAAAATCGGAG
GCCACTGTCTAGATCATGTGCGGAACGGGTTCACCGTGATAAAGCACCTC
AGAAATAAACACTCGGCGTCCGTGCGAAACTTCAGCAGCGGCAGCACCAG
GAACGGGCAAGGCCAGCAGGCCAGCAGCAGAGACGGCGGCGGCGGAGAGC
ATGGGGCAGCAGGGATGGAAGGGAGGCCCGCGGCGGCGTTTTCGACAACC
CTTGATACCGGCATGGGAAGGTTTGGCGGCCTCTCCGCCGGGTTGGTGCT
GAGGCTCGGTCCCGCTGACTTCGTGCCGCACCACCACCGGCTGTACCCAA
CGCTCGCAGAATTCCCACCGGACACGCTGGCACAGAGAAGGGACGCAAGC
GATGGATTTTCCTGCCAGCAGCAACAGCAGCAGGCTTATGATGATCCCAA
TCGGCACGCCGGCGAAAGCGATGAAGTTGACGTGCCAGCTTCGACGATTG
CGCCGCGCCACGGCGGCAACGGGGGAGCCAGCTCCCCCGCAGCGGCGGCG
GACGATGCGAGAGAAGAGATCAGAGCGGTGCCCTACCGCGACATTGCATC
GACTGCCGCGACGGGGCACAGCGGCGCCCTCATGGCGATCCTGCTGTCCA
GGCTCGCCGCCGTCAACCCCGGTGATGCGTACACGGGTGACACTCCCGCC
TCCGCCGCTGCAGCTGCCGGTGGT
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