mRNA_Ecto-sp13_S_contig15128.3870.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15128.3870.1
Unique NamemRNA_Ecto-sp13_S_contig15128.3870.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15128.3870.1 vs. uniprot
Match: A0A6H5KM44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM44_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.630e-16
Identity = 45/60 (75.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   82 KRKFASMAKALCRYSAWTASSRQPNDAE---TGPPKHQRKASAPGTMGSGTAATHETVSS 252
            KRK  SMAKALCR+SAWTASSRQPN AE   T   K QRKASAPGTMG GT ATH+TV S
Sbjct:   98 KRKLGSMAKALCRHSAWTASSRQPNHAESPTTVSSKRQRKASAPGTMGGGTVATHKTVGS 157
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BLAST of mRNA_Ecto-sp13_S_contig15128.3870.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.330e-11
Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   82 KRKFASMAKALCRYSAWTASSRQPNDAETGPPKHQRKASAPGTMGS----GTAATHETV 246
            KR+F  MAKALCRYSAWTASSRQPN AE+   K QRK SAPGT       G AA H+T 
Sbjct:  171 KREFGGMAKALCRYSAWTASSRQPNHAESDSSKRQRKGSAPGTKAQCGSGGAAAAHKTA 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15128.3870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KM44_9PHAE1.630e-1675.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLW1_ECTSI2.330e-1164.41EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15128contigEcto-sp13_S_contig15128:27..4230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-13_000910.3
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462805.313234-UTR-Ecto-sp13_S_contig15128:26..481681462805.313234-UTR-Ecto-sp13_S_contig15128:26..48Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15128 27..48 +
1681462805.3597925-UTR-Ecto-sp13_S_contig15128:4225..42301681462805.3597925-UTR-Ecto-sp13_S_contig15128:4225..4230Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15128 4226..4230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462805.3253665-CDS-Ecto-sp13_S_contig15128:48..951681462805.3253665-CDS-Ecto-sp13_S_contig15128:48..95Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15128 49..95 +
1681462805.3409567-CDS-Ecto-sp13_S_contig15128:595..6931681462805.3409567-CDS-Ecto-sp13_S_contig15128:595..693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15128 596..693 +
1681462805.3491108-CDS-Ecto-sp13_S_contig15128:4145..42251681462805.3491108-CDS-Ecto-sp13_S_contig15128:4145..4225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15128 4146..4225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15128.3870.1prot_Ecto-sp13_S_contig15128.3870.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15128 49..4225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15128.3870.1

>prot_Ecto-sp13_S_contig15128.3870.1 ID=prot_Ecto-sp13_S_contig15128.3870.1|Name=mRNA_Ecto-sp13_S_contig15128.3870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
MTSTRSKRERRGKKRGQGQASASSRVWPRPSAGTAPGQPAAGSQMTLKQG
HPSTNGRPPHQEQWVAGRRQHTRQ*
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mRNA from alignment at Ecto-sp13_S_contig15128:27..4230+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15128.3870.1 ID=mRNA_Ecto-sp13_S_contig15128.3870.1|Name=mRNA_Ecto-sp13_S_contig15128.3870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15128:27..4230+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGAAGAGGGAGAGGAGGAGGATGACCAGCACGAGGAGCAAGCGCGAGA
GGAGGGGAAAGAAGAGGGGGTGAGGCTGGGGGTTAACGTCAGAGGTATTT
TGTGTTTGACGCATTTGATACTCGTCGGACGAAAACTGGCAGTGATGAAA
AGCGAATGCACTTCTCTCAGTTATCGATGCTGAGTGGCTGCAGAATTTTC
AGATCGAGACGGGTTGAAGGTGGGCACTCTTCTCGACAGCAATGGCCAAC
GTTGTGCACAGGGTGAATCCATCCCGTTCACGCCTAAACATGCCATGGCA
AAGTCTCCCGTCATTACTTGAATACGGTGTGTGTTAGTCTGTCTGGGGAT
CATCTTAGCACTGAAGCCTGCCTCTCCTTTGCTGTCTCCGTGCCAACAAG
AGGTGTTAGAAATTCCGTCTTGTCGTAGTCAGATAGTGATGATGACTGGG
TTGTACTCGATTTTCATGTAGATATGAAAGCTCTGGGTGGCCCCAGAACT
GCCTCTTTGAGATGGTGCTTGCGGCATCAACCAGACCCATTCGTGCGGTT
GTCGGATACCTCGATCTAGGCAAGGCCAGGCAAGCGCAAGTTCGCGAGTA
TGGCCAAGGCCCTCTGCCGGTACAGCGCCTGGACAGCCAGCAGCCGGCAG
CCAAATGACGCTGAAACGTGAATGCCAGATATGGTTTTTGAGTGTGGCAA
CCGCACGAAATGCGGGGATCACCCGCTCGTAGATGTGATCCAGCAGAGTT
TCAGGTTCTCTTTGGGATATTTGTTCAAAGCGATACCGATCCTGACCGTT
CATAGCCCTTGAGGGTGCAAAGGGGGCAACGCCCGTCTAGCGTCTAGACT
ACGGCGGGGGCGTTCAGATTAGATCAGAGAGAAGCGACGAGTCTCTTTCA
GGTGGCCACAACCTGCAGATATCTCGGGACACGATACAAGACACGTTCCA
TGGCATCTTCCAACACTGCGAATGGTTGCTGACGGCGCCTACACATAAAC
GTCAACCCTGCCGCTCTATTTTCGTTACCGTCTGGTTGTCGGGTGTACAA
GGTGCTCGCACTCGCCTGCGTGTCACACACTCCGTCAGGGAAGCCCGCGG
TCTAGATAGCGCTGGCGTTTGTCTATAATTGGGGAGAAGATGGTGATGAA
GTCAACACCAGAACACCAACAGGCGACTGGCGAGCTGAATTGTTGTTTTG
CACTCACGTTGTTTTCTTCCCCAGGTGGCAATTATGCGCGCGCGTTTTGT
ACATCGTTTCCCTCGATCCATGTTGCCCCCTCGGCCGAAGAAAAATGGCT
GCTGCGGAGAGTTTTCGATTTTTCGACCTCTGCGGGATGTTGTCAACGCC
AACGGTTCTATAGACAGGCACCCCTCCCCCCTGGGTCTTTCTATGGGAAA
CAGCGGGCGAGCCTGGGGACTGCAGGTGGAATACTGTTGGTCTATTGCTG
TTGCTGCTGCTGTGGTTCTTGTCGTCATGACGTGAAATATCGCTTCCACC
TCTACACATAATTTCATCTGCCCACCCCTCATGGCAAATCATCACGTTTT
TGTGGTCCCAAGCTGACCCACAAATCGACGAAAACCAAGGAAGACATGAA
CTAGGAGAGGGAGTGGTCCCCACACGAGGATATGTCAAGAACCTATTTGC
CACAATCACTCGCTAGCTTGACTTGCTCGTCCCGTCATTTCTTGGCACCA
TTCATGTCCTTTTGGCACAACTTTGATGCACCAACCCCGGGGTCACCTAG
CAACTCCCCTCGCAAGGTGCGGGCCTTCATCTTTTAACGCGGGGAGGGTT
CAACTGCCCCTTCTCTCATTGTTGTGGGTGCTCACGACGACGCGCGTTTC
ACCCAACAATTGCGAGTTTTGAATGTAGTAAATATTTGAACCCGTGACCT
AGGGCGATATGGTGTACTAGATTGCCAGCTAGACCACTAAGCCCGAAGTT
CTGTGGCCAAGTCAAGTTCTGTGACCAAAGCCAGGGTAAAAACATATCCG
ACCTGCAAAAGTTTGTTCGCACGCCTCCAGAGCCATGGAGTGTTTCTCGT
CGTTGCTTGTGTTCGCCGGCTTGTTCAACCTCTCTCCAACTCTGGGTGTG
TGGCAACATTCCTAGGTGCAATATGTGTGATATTCTATTAGCTGAATATT
TAGGCGAAAAGAGAACAAACCATGCGCATTCTGCACGACAGAGATACGCC
CTGGCCACGGCTTTTTCTCCACGCGCTCCTGGTATGCCGGGCAGGAATCT
GTTGGGTTTACCACGGTGAGGCGAACATCCCGTCTGAGAGGACACAGCTA
CAGTACAACAGACATGCATCAAAAATGTTTGAATTGCTCGAAGCCATGAA
CCCCTCGAACCGAAGTTGAAAACTCATGTGAGCGACAAATAGGAAGCGAT
TAGAAGGCAACGCTAACGTCATAACGAGCACGATGGTCTCTTGCCACTAC
TCGTGCTGCTTATGTCCAGAACAATCGAGGCTCCATATGTAACGTAAACG
CACGCAGCACACTCTGTCGGGCACGCCCGATGACTATAAAACACGTGCGT
GGGGTTTGATCCGGCTGTGCGACAGACGCGTTTTCATTGGTCGCCCTGTG
AACGCGGCCAAATTCAGTATCTCTCATCACCAGTGATGGTGTGTGGGGTT
TTGTTCTCAATTCTTTTTCGCCATTTCCGGCGCCGTCGCCACTGCAGCCC
ACTGCCGTCACGTGTGAAGGCACGTCCGAGTAGCTATAGTCGTGTTGATT
CCTTCCCGTTGAACAAGTGAAGGGTAGTGAGGGCGTGTGGCGTTCTGGGT
AGGAAAAACATCGGTGGGACAATATATCCTGAGTAGTTAGGCTTTCCCCC
GATATGGTTGTGTGCCCACGAAACTGAGAGCCGGATATAGCAGAGATTTT
TGGGGGGCTGATGCGCACTGATGGGAGGGACCCAGCTAACATAACATGGA
CGATCCTTCTCTGGCACCAGAAGAGAGCATCCATCGAAAATTCACCTTCC
GCTTGAGCTCTACAGGTTGACCTATCTACCAACAACGAAGTGCCAATCGA
GGTGTGTAGTATGGCCCTATTGTTTGGTGATGGTGTGCAGGCCGTTCTGA
TTGTTGGCTACCCTGTCCCCGGGAAGCAAAAACAAAATCCCGGAGAACAA
CACTCAGATTGATGGGTCATATTTCCCGTCAGCGCAGGAAGTATTTAGGA
ATATCCCGAATAGTCTCAACGGTCTGTTGGTGACTATTTCTATACGTGCA
GTTACGTCCTCTGATGGGCAGAACGTTGTGCCTGGTGGTCGGTTCTTCGC
CGGTGCCCGCTCCCAATTCCGCATTTCGACAGTGATACGCATCCGCGTTT
ATCCCAGTTCGCGGCCGCTAGGCCGTGCGTTGGACGTGGGCAAGGGTAGT
TGGGTTGGGTCGGCAACGATGTGTGACACATCCCATGTAAGGAACCTAGG
TTCAACGTCCGGTTAGACCTAAAGAGTCACGAGCAGGCCGTAAATAGACC
CCATACCACAAATGGGGATACGCCGGCGTCGGCCACATAGGTTTGACTCA
TTTCACGTTGACTTCAAAGGTGTACCCGACTGAGTCGCTTATTGTCCCGC
AGACCGTGCTGGGTCGTTTCCTTGTGTTTATCGTAGGCAAATTTCATATC
TCTCTCCCGTGAAATAAGAAAGTCTCAAACGGGGCCTATTATCAGACGCC
AGCTGTCCGTTGCGTTCTACTCCCATCTCTATCCCACCGGAAGAAAAAGA
AGATCGACGAATCAGACTGACCCATAGTCCGCAGCTGGGCATCTGTATTC
TTGACATCGAGTATCTCAATCGAAGTACGATGTCACCTTACTCCTCTTTT
GCAACTCCAATTGCTTCCTGGACGTTTCAGGCGTTGCTCGTAGCAGCTGG
GAGCTCTAGTCGTTGGAGAGTACCCGCAAACTGAAAACGACCTACATTCA
ATCCATCACGTCCACGGGCAGTATTATTGTATTATTGTATTTGTTCGAGT
AAAGAACATTGATGGGCGAGGTTACCCAGTGTCCTGACCCATGGTGGCAC
ACTCGATTACCTCTTGACGTTCTACCCGATCGCTGGGTTTATATCGTGAC
TGATTGTCAACCCCACAAGAGGGCCACCCAAGCACCAACGGAAGGCCTCC
GCACCAGGAACAATGGGTAGCGGGACGGCGGCAACACACGAGACAGTGAG
TTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15128:27..4230+

>mRNA_Ecto-sp13_S_contig15128.3870.1 ID=mRNA_Ecto-sp13_S_contig15128.3870.1|Name=mRNA_Ecto-sp13_S_contig15128.3870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15128:27..4230+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAGCACGAGGAGCAAGCGCGAGAGGAGGGGAAAGAAGAGGGGGCA
AGGCCAGGCAAGCGCAAGTTCGCGAGTATGGCCAAGGCCCTCTGCCGGTA
CAGCGCCTGGACAGCCAGCAGCCGGCAGCCAAATGACGCTGAAACAGGGC
CACCCAAGCACCAACGGAAGGCCTCCGCACCAGGAACAATGGGTAGCGGG
ACGGCGGCAACACACGAGACAGTGA
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