mRNA_Ecto-sp13_S_contig15122.3867.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15122.3867.1
Unique NamemRNA_Ecto-sp13_S_contig15122.3867.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15122.3867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15122contigEcto-sp13_S_contig15122:947..3937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score78.2
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D8LQ56
Model size1976
KEGG koko:K08511,ko:K08515
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0000149,GO:0000323,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006887,GO:0006906,GO:0006996,GO:0007034,GO:0007041,GO:0008150,GO:0008333,GO:0009987,GO:0010008,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0030139,GO:0030659,GO:0030666,GO:0031090,GO:0031201,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045335,GO:0046903,GO:0046907,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0071840,GO:0090174,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852
Exons4
EggNOG free text desc.SNAP receptor activity
EggNOG OGsCOG5143@1,KOG0859@2759
Cds size1392
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15122.3867.1prot_Ecto-sp13_S_contig15122.3867.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15122 1250..3656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462805.0694482-UTR-Ecto-sp13_S_contig15122:946..12491681462805.0694482-UTR-Ecto-sp13_S_contig15122:946..1249Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15122 947..1249 -
1681462805.1344078-UTR-Ecto-sp13_S_contig15122:3656..39371681462805.1344078-UTR-Ecto-sp13_S_contig15122:3656..3937Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15122 3657..3937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462805.0922687-CDS-Ecto-sp13_S_contig15122:1249..15801681462805.0922687-CDS-Ecto-sp13_S_contig15122:1249..1580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15122 1250..1580 -
1681462805.10712-CDS-Ecto-sp13_S_contig15122:1805..19541681462805.10712-CDS-Ecto-sp13_S_contig15122:1805..1954Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15122 1806..1954 -
1681462805.116423-CDS-Ecto-sp13_S_contig15122:2534..26961681462805.116423-CDS-Ecto-sp13_S_contig15122:2534..2696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15122 2535..2696 -
1681462805.1246626-CDS-Ecto-sp13_S_contig15122:2906..36561681462805.1246626-CDS-Ecto-sp13_S_contig15122:2906..3656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15122 2907..3656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15122.3867.1

>prot_Ecto-sp13_S_contig15122.3867.1 ID=prot_Ecto-sp13_S_contig15122.3867.1|Name=mRNA_Ecto-sp13_S_contig15122.3867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=464bp
MSSRARRWVLRSPRREGEAQEALVGNEVLDNGAAPRDKPPLVATSDTAAP
GSRSSSLLSRLRSKLPVSTGILHVKRSYRYSSTTKGRQRSQRGGAGGTSA
TSTPHLSPGFRSENGTTAAEVAAEKAIVTEREKAGEATSGLCVLPRGPLT
AGDTRESLGRSSTHSHKDRAGHHFGDKTRGGAHSASGAQHEEYRGHSKLD
VGEHALSAVKAGRQAPRITFIGVFLNGVAVGLATFVPFGGDTERIALVKE
VLLQPSSSVSPGGCYTARGSALAVHFIVDHKHRVYACITAEDVPLTVGLS
LLEEVQIEYISTVSTLAFSTKENSQSARCHAQLSRTWVKYEGIERTLTRE
RETRRLLGEDPPDIESPLSGDNKTYGGADVTHLNFTAEHQATLKAATQEV
FSLKEGNEKREVGADVARPDDSFAATRVRSGRKRIKSAILLLASGVAVAC
IVLYAARRANFVI*
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mRNA from alignment at Ecto-sp13_S_contig15122:947..3937-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15122.3867.1 ID=mRNA_Ecto-sp13_S_contig15122.3867.1|Name=mRNA_Ecto-sp13_S_contig15122.3867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2991bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15122:947..3937- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTTCAGGACGTATTAGTTCCTGTTCTTCTCCTGTTCGATGTCTTCTGT
GTGTGCCTGTTGCCTGTAGACGAACCGACACCCACAAGGTTTTCCTTAAC
CACTATTTAGCAAAGACTATGTATAAGCGCGACGGTTACACTTGATTCCT
TCCAAGCGTCAGAAAACCCGCCGCATTTCGGTGACGATACTCGGTCAGCT
CTCCTGACGTCCCGGATCTCTGCCCCCCCCCTGTCGGAAGATGCCTGATT
CGTTCTGGTCATAAGGAGTAACAATAACAGGATGTCATCCAGGGCAAGAA
GATGGGTTCTCCGAAGTCCCAGAAGAGAGGGAGAGGCACAGGAAGCCCTG
GTTGGGAACGAAGTCCTGGACAACGGGGCGGCACCTCGAGACAAACCTCC
ACTTGTTGCTACCTCTGATACTGCTGCCCCAGGCAGTAGATCGAGCTCGC
TGCTGTCTCGTCTACGAAGTAAGCTGCCGGTGTCTACAGGCATCCTACAT
GTAAAACGCTCGTATCGATATAGTTCCACTACCAAAGGACGACAACGCTC
ACAAAGAGGGGGAGCCGGTGGCACCAGTGCGACTTCGACACCCCATCTTA
GTCCGGGTTTCCGGTCAGAAAATGGAACAACCGCAGCAGAAGTAGCAGCA
GAAAAAGCAATAGTAACGGAAAGAGAAAAGGCGGGGGAGGCAACGAGTGG
TCTGTGTGTTTTGCCTCGCGGACCCTTGACGGCTGGCGACACGAGAGAAA
GCCTTGGCCGTTCTTCAACACATTCTCACAAGGATCGTGCGGGACACCAT
TTTGGCGACAAGACACGAGGCGGGGCACACTCGGCATCAGGTGCTCAGCA
CGAGGAATATCGTGGCCACAGCAAGCTGGATGTAGGAGAACATGCCCTAT
CAGCTGTCAAGGCCGGCAGACAAGCGCCACGGATAACCTTCATTGGTGTG
TTTCTGAACGGAGTGGCGGTGGGCCTTGCAACCTTTGTGCCTTTCGGAGG
AGATACCGAGAGAATAGCTCTGGTAAAGGAGGTGCGTGCGCCAATACATA
TTCCTACGCACTCGCCTTCACCTTTTAGTCTACAAGCCTGTCATAATATT
GCCATATATGCCGTTGGTGCATTTATATGGCCTGGTATATTGTACGATTT
TGCGAGAAGGAAGTTCGATGTCGATCACGACCCGCTCTCACACCTCTCAC
GCATTCATTCCATCTCACGTGTGGGCGCCGTCCTGCTACAGGTTCTGCTG
CAGCCGAGTTCCTCTGTCTCTCCTGGAGGTTGCTATACTGCACGCGGTTC
AGCGCTGGCTGTACACTTTATCGTTGATCATAAACATCGGGTATACGCCT
GCATTACTGCAGAAGATGTGCCCTTGACCGTGGGGTTGAGCCTCCTCGAA
GAGGTGAGGGTGTACCCGAACCTACTTGTTGGTTTGGAACAGATATCGTA
CACAACTCCAAGACAAGGCCAACATACTATACGTGCATTAGCGCTACAGA
ACTGCGGAAAGCGGTAGTGTATGTAGAGTGCAATGGGATGAGTCTGTTTT
GCAGTGACAGCTCGAACTTCAAACACTCACCTTTCTTTCCAGAGCCAGAG
AGGGAGACAACGATTCTATTTTATTCAATTTGGCGATATCTTAACCGATA
ACTCACTAAATACAGGAATAGAGGTTGGATACAGCCACCTATCGCGCAGA
GTGCTCCATCCCCCCTCGTGCAGAATCATGCCTCAGCCTCCGCGTAATGT
AGCAACGAAGCACAAGGTAGGAGTATTCTTCTTACAATAGTCTATATCCT
GTCGTCAATTTCTGGGAATTTTGTGCCTTTAGCTAGAGGTACAATGGGAG
TTGTCGATCTTCGACATAATTACCCCCTTGAGTTACTCTTCGTTTTTGAC
GCACATGCACACGGCATTTTGGTTCCAGCCACTTCACATCTCTGACGTGC
GCAACCTTTCCTGTGTCTCTGGGGAAAATTCAGGTGCAAATCGAGTACAT
CTCTACCGTATCAACGTTGGCGTTCTCGACAAAGGAAAACTCACAAAGCG
CTCGATGCCACGCTCAGCTGTCCCGTACTTGGGTCAAGTACGAGGGGATA
GAACGGACCCTAACGCGTGAGAGGGAAACAAGGTGAGAGTTGGGTCGAGC
ACGGCGGTATTGCCCTCACGTCCCATTTTTTACAATAACTCGTTTTCGCA
CCCCCCTCGCTTGAGCAGCTACGGCGGAAGACTACCCCCTGTCGTTGATG
CGTAGATTTTTCCTTGGCCTGTTCTCTTACGTGCGTGGGTCGATGATGCC
GCTGTGTCGTAAGTATTCCTTAATTGACGCTTTTCCGGCAATAATGCTGC
GAATCAGGCGCTTACTGGGAGAAGATCCGCCTGACATCGAGTCTCCATTG
TCCGGGGACAACAAAACCTACGGTGGAGCGGACGTTACCCACCTTAACTT
CACCGCTGAGCACCAGGCCACCTTGAAGGCCGCTACGCAAGAGGTATTCT
CCCTCAAAGAGGGGAACGAGAAGAGGGAGGTTGGTGCTGATGTGGCGCGC
CCGGACGATTCTTTCGCGGCCACAAGGGTTAGATCCGGCCGCAAGAGGAT
CAAGAGCGCTATCCTGCTTCTCGCCTCAGGTGTCGCGGTAGCATGTATAG
TGTTGTACGCGGCGCGACGCGCAAACTTCGTCATCTAGTGCCTATTGTTT
GTGTTGTTGACAAAGCGGCCTTGTGTTTGGCGTGCCGCTTTGTTGCCGAA
AATTAGAATCATCAAGATTATGAGACTCCTCCCCTGTACACTAGACATAA
CGCCCAGAGTTGCAGCCCTCCTGTAAAATAGACGTGTCGTCCAGAAGCTC
CTGTAAAATAGACGTGTCGTCCAGAAGAAATGTTTGAAGTGACGGCAAGC
CGCAAACGGTACAGGTATCTACCGTTCTTTGAAGCTACACTTTGTTGCGG
AAGTTTTCGCGATGTCGGGAGCCCGCACCTGTCGTTGTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15122:947..3937-

>mRNA_Ecto-sp13_S_contig15122.3867.1 ID=mRNA_Ecto-sp13_S_contig15122.3867.1|Name=mRNA_Ecto-sp13_S_contig15122.3867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1392bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15122:947..3937- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATCCAGGGCAAGAAGATGGGTTCTCCGAAGTCCCAGAAGAGAGGG
AGAGGCACAGGAAGCCCTGGTTGGGAACGAAGTCCTGGACAACGGGGCGG
CACCTCGAGACAAACCTCCACTTGTTGCTACCTCTGATACTGCTGCCCCA
GGCAGTAGATCGAGCTCGCTGCTGTCTCGTCTACGAAGTAAGCTGCCGGT
GTCTACAGGCATCCTACATGTAAAACGCTCGTATCGATATAGTTCCACTA
CCAAAGGACGACAACGCTCACAAAGAGGGGGAGCCGGTGGCACCAGTGCG
ACTTCGACACCCCATCTTAGTCCGGGTTTCCGGTCAGAAAATGGAACAAC
CGCAGCAGAAGTAGCAGCAGAAAAAGCAATAGTAACGGAAAGAGAAAAGG
CGGGGGAGGCAACGAGTGGTCTGTGTGTTTTGCCTCGCGGACCCTTGACG
GCTGGCGACACGAGAGAAAGCCTTGGCCGTTCTTCAACACATTCTCACAA
GGATCGTGCGGGACACCATTTTGGCGACAAGACACGAGGCGGGGCACACT
CGGCATCAGGTGCTCAGCACGAGGAATATCGTGGCCACAGCAAGCTGGAT
GTAGGAGAACATGCCCTATCAGCTGTCAAGGCCGGCAGACAAGCGCCACG
GATAACCTTCATTGGTGTGTTTCTGAACGGAGTGGCGGTGGGCCTTGCAA
CCTTTGTGCCTTTCGGAGGAGATACCGAGAGAATAGCTCTGGTAAAGGAG
GTTCTGCTGCAGCCGAGTTCCTCTGTCTCTCCTGGAGGTTGCTATACTGC
ACGCGGTTCAGCGCTGGCTGTACACTTTATCGTTGATCATAAACATCGGG
TATACGCCTGCATTACTGCAGAAGATGTGCCCTTGACCGTGGGGTTGAGC
CTCCTCGAAGAGGTGCAAATCGAGTACATCTCTACCGTATCAACGTTGGC
GTTCTCGACAAAGGAAAACTCACAAAGCGCTCGATGCCACGCTCAGCTGT
CCCGTACTTGGGTCAAGTACGAGGGGATAGAACGGACCCTAACGCGTGAG
AGGGAAACAAGGCGCTTACTGGGAGAAGATCCGCCTGACATCGAGTCTCC
ATTGTCCGGGGACAACAAAACCTACGGTGGAGCGGACGTTACCCACCTTA
ACTTCACCGCTGAGCACCAGGCCACCTTGAAGGCCGCTACGCAAGAGGTA
TTCTCCCTCAAAGAGGGGAACGAGAAGAGGGAGGTTGGTGCTGATGTGGC
GCGCCCGGACGATTCTTTCGCGGCCACAAGGGTTAGATCCGGCCGCAAGA
GGATCAAGAGCGCTATCCTGCTTCTCGCCTCAGGTGTCGCGGTAGCATGT
ATAGTGTTGTACGCGGCGCGACGCGCAAACTTCGTCATCTAG
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