mRNA_Ecto-sp13_S_contig1512.3864.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1512.3864.1
Unique NamemRNA_Ecto-sp13_S_contig1512.3864.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1512.3864.1 vs. uniprot
Match: D7G2F5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F5_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 3.010e-111
Identity = 200/208 (96.15%), Postives = 201/208 (96.63%), Query Frame = 1 
Query:    1 MEIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCKVALNGGGAGDDLLGDGGGVSRSKGGRXXXXXXXXRGGMDEAYLKAIDAQGXXXXXXXXXXXXXXXAPDVMTLEDRD 624
            MEIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCK+ALNGG AGDDLLGDGGGVS S    XXXXXXXX GGMDEAYLKAIDAQGXXXXXXXXXXXXXXXAPDVMTLEDRD
Sbjct:    1 MEIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCKMALNGGEAGDDLLGDGGGVSGSXXXXXXXXXXXXXGGMDEAYLKAIDAQGXXXXXXXXXXXXXXXAPDVMTLEDRD 208
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1512.3864.1 vs. uniprot
Match: A0A6H5JI50_9PHAE (IFT81_CH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI50_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 1.400e-77
Identity = 133/137 (97.08%), Postives = 136/137 (99.27%), Query Frame = 1 
Query:    1 MEIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCKVALNG 411
            MEIESEYQEKRGA+EKVAVGLEVERQQLEHECNTSQEDAL+EESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSS VQRRMFGGLHALLKCK+ALNG
Sbjct:  592 MEIESEYQEKRGAYEKVAVGLEVERQQLEHECNTSQEDALSEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSMVQRRMFGGLHALLKCKMALNG 728
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1512.3864.1 vs. uniprot
Match: A0A836CMZ3_9STRA (Intraflagellar transport protein 81 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ3_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.010e-45
Identity = 102/180 (56.67%), Postives = 130/180 (72.22%), Query Frame = 1 
Query:    4 EIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCKVALNGGGAGDDLLGDGGGVSRSKGGRXXXXXXXXRGGMDEAYLKAIDAQ 543
            ++E+EY  +R A++KVAVGLEVER QLE EC+  Q +AL EESR+HFL +L  + EARL  + Q+ +W+ G+GRLLP+F+C +DLYE+KLRQQE LSK LRRQQR+I+E EG+S +QRRM+G L ALL+CK+AL                 R     XXXXXXXX  G DEAYLKA+DAQ
Sbjct:  532 DVEAEYARRRNAYDKVAVGLEVERSQLEQECDALQTEALQEESRFHFLAALTGVAEARLARIEQERKWQGGEGRLLPDFKCLKDLYENKLRQQEGLSKALRRQQRTIRETEGASALQRRMYGDLQALLRCKLALR----------------RXXXXXXXXXXXXXALGSDEAYLKAMDAQ 695
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1512.3864.1 vs. uniprot
Match: A0A7S2XVV0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVV0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.340e-40
Identity = 70/132 (53.03%), Postives = 106/132 (80.30%), Query Frame = 1 
Query:    4 EIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCKV 399
            ++E +Y +K+ A+EK+AVGLE+ERQQLE +C+  Q++ L EESRYH+LQ L +  E+++  +RQ+E+W+ GDGRLLP+F+ +++LY++K+ QQE L+KQLR+QQ+ I+ENEGS+  QR+MF  L  LL CK+
Sbjct:   41 QVEDDYLKKKNAYEKIAVGLEIERQQLEQDCDAFQDECLREESRYHYLQCLRNTIESQITKMRQEEKWDAGDGRLLPDFKNYKELYKNKMSQQENLAKQLRKQQKDIRENEGSNIEQRKMFADLKKLLDCKL 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1512.3864.1 vs. uniprot
Match: A0A7S3USE0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE0_HETAK)

HSP 1 Score: 132 bits (333), Expect = 2.740e-32
Identity = 72/132 (54.55%), Postives = 95/132 (71.97%), Query Frame = 1 
Query:    4 EIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCKV 399
            E+E EY +KR  +EKVAVGLEVE+Q+LE  C   Q+  L EESRYH+LQ L  I EA L  VRQ+E+++KG+GRLLPE Q  +DLY++K +QQ+ ++ QLR++Q+ IKENEGS   QR  F  L  LL  K+
Sbjct:  515 EVEGEYLKKRSVYEKVAVGLEVEKQELETACTEKQDGCLQEESRYHYLQCLKHIAEATLDKVRQEEKYQKGEGRLLPEIQTFQDLYKNKEQQQKNMANQLRKRQKEIKENEGSYMKQRAQFANLKKLLDIKL 646
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1512.3864.1 vs. uniprot
Match: A0A812ZKF3_SYMMI (IFT81 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZKF3_SYMMI)

HSP 1 Score: 119 bits (297), Expect = 2.120e-30
Identity = 62/133 (46.62%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:    1 MEIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCKV 399
            ME+ES +QE +G ++KVA+ LE+++Q LE EC+  QE+ L EESRYH L  L +I+  RLQ   Q+++W  G+GR+L +F   ++LY HK+ QQE L+KQLR++Q+ +KEN    T Q+  F  L  LL  K+
Sbjct:   12 MELESRHQESKGNYDKVAITLEMDKQALEKECDAFQEECLREESRYHTLNCLVNISRIRLQRAEQEKKWNDGNGRMLRDFASFKELYAHKIAQQEQLTKQLRKRQKELKENAMVLTNQKTNFSNLQRLLNAKI 144
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1512.3864.1 vs. uniprot
Match: A0A7S3K1G4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1G4_9STRA)

HSP 1 Score: 125 bits (315), Expect = 8.110e-30
Identity = 65/133 (48.87%), Postives = 95/133 (71.43%), Query Frame = 1 
Query:    7 IESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGR-LLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCKVA 402
             ESE+  K+ A++K+AVGL+VERQQLE +CN +Q+DAL EESR+H+L  L ++ +  +Q V+ ++ W+ G GR LLP F+C+  LY++KL QQ A + QLR+Q+  I++N+  ST QR +F  L  LL  KVA
Sbjct:  529 FESEFLSKKAAYDKIAVGLDVERQQLEKDCNHAQDDALQEESRFHYLNCLIAMAQTTIQRVQDEDTWKSGQGRGLLPNFRCYEQLYQNKLNQQAAFADQLRKQRADIEQNQHISTQQRELFSSLKTLLDAKVA 661
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1512.3864.1 vs. uniprot
Match: A0A2D4CKB0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CKB0_PYTIN)

HSP 1 Score: 119 bits (298), Expect = 5.240e-29
Identity = 63/137 (45.99%), Postives = 94/137 (68.61%), Query Frame = 1 
Query:    4 EIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCKVALNGG 414
            E+E  Y E++  ++  AVGLE ER +LE EC+  Q+D L EES+YH LQ L  I   R++ V+Q+  +EKG  RLL + +  ++LY+HK+ QQE+L+K+LR+QQ+++K N      QR MF GL ALL+CK+ ++ G
Sbjct:  129 ELEQTYLERKAQYDNTAVGLETERIKLEQECHAFQDDCLREESQYHTLQCLLDIERGRVERVQQEMEFEKGSARLLRDIRSFQELYKHKVTQQESLTKELRKQQKTLKTNTSEHVAQREMFEGLLALLQCKLRVSSG 265
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1512.3864.1 vs. uniprot
Match: A0A7S3HBW0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBW0_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.560e-28
Identity = 62/133 (46.62%), Postives = 95/133 (71.43%), Query Frame = 1 
Query:    1 MEIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCKV 399
            M++ES YQE+R  ++KVAVGL++E+Q+LE + N  Q++ L EESRYH+LQ L  IT+ ++    Q++ W+KG GR++ +F   ++ Y++KL QQE L+KQLR +Q+ +KEN G+ T Q+  F  L ALL+ K 
Sbjct:  520 MDVESSYQERRNTYDKVAVGLDLEKQKLEKDANFIQDECLREESRYHYLQHLIGITKIKIDRAEQEKAWQKGKGRMMRDFAHLKEFYQNKLTQQEHLTKQLRSKQKELKENSGARTNQKSNFLHLQALLQMKA 652
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1512.3864.1 vs. uniprot
Match: A0A024UUZ4_9STRA (IFT81_CH domain-containing protein n=11 Tax=Aphanomyces TaxID=100860 RepID=A0A024UUZ4_9STRA)

HSP 1 Score: 120 bits (300), Expect = 8.320e-28
Identity = 64/134 (47.76%), Postives = 93/134 (69.40%), Query Frame = 1 
Query:    4 EIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQSLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQLRRQQRSIKENEGSSTVQRRMFGGLHALLKCKVAL 405
            E+E  Y EK+  ++  AVGLE ER +LE EC   Q+D L EES+YHFL     I  A+L  V Q+E +EKG+G+LL +F+  ++LY++K+ QQE+L+K+LR+QQ+++K N G   VQR +F  L  LL+CK+ L
Sbjct:  518 EMEQTYLEKKAQYDNTAVGLETERIKLEQECTAFQDDCLREESQYHFLNCQIQIENAKLDKVTQEEEFEKGNGKLLRDFRTFQELYKNKVNQQESLTKELRKQQKTLKTNLGDYVVQRGLFDQLLKLLQCKIKL 651
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1512.3864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2F5_ECTSI3.010e-11196.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI50_9PHAE1.400e-7797.08IFT81_CH domain-containing protein n=1 Tax=Ectocar... [more]
A0A836CMZ3_9STRA2.010e-4556.67Intraflagellar transport protein 81 n=1 Tax=Tribon... [more]
A0A7S2XVV0_9STRA1.340e-4053.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3USE0_HETAK2.740e-3254.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812ZKF3_SYMMI2.120e-3046.62IFT81 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3K1G4_9STRA8.110e-3048.87Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2D4CKB0_PYTIN5.240e-2945.99Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S3HBW0_9STRA6.560e-2846.62Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A024UUZ4_9STRA8.320e-2847.76IFT81_CH domain-containing protein n=11 Tax=Aphano... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1512contigEcto-sp13_S_contig1512:13359..15718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score326.2
Seed ortholog evalue1.1e-86
Seed eggNOG ortholog2880.D7G2F5
Preferred nameIFT81
Model size627
KEGG koko:K19677
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006928,GO:0006935,GO:0006996,GO:0007017,GO:0007018,GO:0007276,GO:0007283,GO:0007600,GO:0008092,GO:0008150,GO:0008589,GO:0009605,GO:0009966,GO:0009987,GO:0010646,GO:0010970,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0022414,GO:0022607,GO:0023051,GO:0030030,GO:0030031,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0035264,GO:0035735,GO:0036064,GO:0036126,GO:0040007,GO:0040011,GO:0042073,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045177,GO:0046907,GO:0048232,GO:0048583,GO:0048589,GO:0048609,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050906,GO:0051179,GO:0051234,GO:0051606,GO:0051641,GO:0051649,GO:0051704,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0097223,GO:0097225,GO:0097228,GO:0097542,GO:0097729,GO:0097730,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons4
EggNOG free text desc.intraciliary transport involved in cilium assembly
EggNOG OGs28JXE@1,2QSBR@2759
Ec32 ortholog descriptionIntraflagellar transport protein 81
Ec32 orthologEc-27_001390.1
Cds size627
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.8874133-CDS-Ecto-sp13_S_contig1512:13358..136481681462804.8874133-CDS-Ecto-sp13_S_contig1512:13358..13648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1512 13359..13648 -
1681462804.899155-CDS-Ecto-sp13_S_contig1512:13921..140551681462804.899155-CDS-Ecto-sp13_S_contig1512:13921..14055Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1512 13922..14055 -
1681462804.908223-CDS-Ecto-sp13_S_contig1512:15011..151661681462804.908223-CDS-Ecto-sp13_S_contig1512:15011..15166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1512 15012..15166 -
1681462804.9183474-CDS-Ecto-sp13_S_contig1512:15670..157181681462804.9183474-CDS-Ecto-sp13_S_contig1512:15670..15718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1512 15671..15718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1512.3864.1prot_Ecto-sp13_S_contig1512.3864.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1512 13359..15718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1512.3864.1

>prot_Ecto-sp13_S_contig1512.3864.1 ID=prot_Ecto-sp13_S_contig1512.3864.1|Name=mRNA_Ecto-sp13_S_contig1512.3864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp
MEIESEYQEKRGAHEKVAVGLEVERQQLEHECNTSQEDALAEESRYHFLQ
SLCSITEARLQSVRQDERWEKGDGRLLPEFQCHRDLYEHKLRQQEALSKQ
LRRQQRSIKENEGSSTVQRRMFGGLHALLKCKVALNGGGAGDDLLGDGGG
VSRSKGGRGGGGAGAGRGGMDEAYLKAIDAQGGGGGGGGGGGRGGGGAPD
VMTLEDRD*
back to top

mRNA from alignment at Ecto-sp13_S_contig1512:13359..15718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1512.3864.1 ID=mRNA_Ecto-sp13_S_contig1512.3864.1|Name=mRNA_Ecto-sp13_S_contig1512.3864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1512:13359..15718- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGATCGAGTCGGAGTACCAAGAGAAGCGAGGGGCACACGAAAAGGT
GGAATAGATAACTAACGAGATGGTGGACACTGTAGATAATCACCCTTCCG
TATTAAGGGAGTTTATAGTCAACAGAGACAAGCAGCAGCGATCTATAGAC
AGCAGGGGACTTGTCAAATGAAGTTCTTCTTTCTGTGTGTTCTCGCCAAA
GAAAGGCACCACAGCATCCAAAAGGGTACATGGTCCGGGTTTCACAGCCA
TGGGCCCTCTCGCGAGAACGCCCGTGTTCACAATCAGCATTGGAGGTTAA
ACATTTTTGCGGACCGAGGAGGATGTTGCTGTTCATGGCGGTGCTGACAG
CGCGACGGTGGCGTTGCTGTTGTGGTTGGGCAAGCACCCCGGCAGCGATG
GTTGCCTTGGATGGTGAATGGTGTAGCTAGCTAGCTGTGTGTGGCGATGT
TACCCTCGCCACAAGAACAATCACATCCTCGCCCCCCCCAAAAAAAACAA
GTACCCACAGCATTATGTGCCGAGCATCACGCTGTCTTTTGCAAAATGCC
AGGTGGCCGTGGGCCTCGAAGTGGAGCGGCAGCAGCTGGAGCACGAATGC
AACACCAGCCAGGAAGACGCTCTGGCCGAGGAGAGCCGGTACCACTTCCT
GCAAAGCCTCTGTTCCATCACAGAGGCCAGGCTGCAGAGTGTGCGACAAG
ACGAGAGGTGGGTGAAAGTGCACGTGGTGACAGACAGATGCGACAATAAT
ACCGCTGACAGGTTGGTTGGTTTCGACGAAAGATAGGGTGGGGGGGGGGG
GGGAGCTCAGTACCATGGGTCACCGTTCGTTGTAGACCATGGCTCCGCGC
ATTCTTGCGAGAAGGCGGGCTGTCGCTGGCCAGGCAAGAGATGGTATGTT
TTGTTTGCCACCAGGTGAGATCCTTAACGAGAGTCGCCGCCGGGCCTGGG
CGGTCGGGGGGGTGTAGAGATTGCTGTATGTCATCCCAATTTTGAACTCG
GCTGCTGCCTGTGAACCACACCACTACACGCGGACCCCTTGATTGAAGAG
CATTGAATGGGGGTCGGGTGCACTCCATTTAGAGTCGCCTTGGCATGGAA
GAGGAAGAGTACCGTTCCCCTACAGTACAGCGCCACTTTTTTTCCTCGCT
GAGCCACGCACGCATGACGATACGTTCCCCGGACAGCCACACGAACGAAA
AGAATGGTTTGCGGTGCCCTGTTTGTGTTCGAGGTCACTTTGATATTGCG
CAGTAGATTTCCTGGAATGTCCACACTGCTGTTCGATCCTTGCCCCTGCC
CCTTTGCTCGAGGTTGGGAGAGAAGGAGGGCAAGAGCGCGCTTGGTGGCC
GTGCCCAAAGATGCGTTAGATGCTGCGTCCTCTGCTCGTTGTTAAAGTTC
GCTCTCTCTCACGGCAATGCTTGTAGCTCTCTCCCTCCCTCCCGCTTGCT
TACTATTGTTTCCCTTCCTCGCCCACTACTGCCGCCGTTGCAATTTTTCT
CCGTCCTCCCCACCACATGAACGCGCACACAACCGGACAAAAACATTATT
ACCACTCGGGGTAATGGTGACGACGGTGTATAATCAATGGTGATGATGGC
GATGGTGATCATTGTGTGGATGATGATGACGTTGATGATGGTGCCGATGA
TGGCGATGACAAGATGGGAGAAAGGTGACGGGCGTCTCCTGCCCGAGTTC
CAGTGTCACCGCGACCTGTACGAGCACAAGCTCCGCCAGCAGGAGGCCCT
GAGCAAGCAGCTCCGCCGGCAGCAGCGCTCCATCAAAGAGAACGAGGGTC
AGTTGTTTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTTGTTGTTGTTGTTGTTTTG
TCGTTGTTGTTGTTGTCGTCGAAGAACCCCCATTCTGAGACCATCAGTCC
AAAAGAAGGACGTTTTACTGAAGTCGTTCTTCCGTTATATTGCAACTTGT
CGTCCAATCACTGCTGCTGCCGTCCGGTTGTTGCGGCCTTATCCCGCCGT
TGTTTACCAAACGAACGCAGGCTCGAGCACGGTCCAGAGGCGCATGTTCG
GCGGCCTGCACGCTCTTCTCAAGTGCAAGGTGGCCCTCAACGGCGGGGGG
GCGGGTGACGACCTCCTCGGCGATGGAGGAGGCGTTTCACGTAGCAAGGG
GGGGCGAGGCGGCGGCGGGGCGGGCGCGGGGCGGGGCGGGATGGACGAGG
CCTACCTCAAGGCTATCGACGCTCAGGGCGGCGGCGGCGGCGGCGGCGGT
GGCGGCGGGCGGGGCGGCGGTGGTGCACCCGACGTTATGACGCTCGAAGA
TCGAGACTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1512:13359..15718-

>mRNA_Ecto-sp13_S_contig1512.3864.1 ID=mRNA_Ecto-sp13_S_contig1512.3864.1|Name=mRNA_Ecto-sp13_S_contig1512.3864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1512:13359..15718- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGATCGAGTCGGAGTACCAAGAGAAGCGAGGGGCACACGAAAAGGT
GGCCGTGGGCCTCGAAGTGGAGCGGCAGCAGCTGGAGCACGAATGCAACA
CCAGCCAGGAAGACGCTCTGGCCGAGGAGAGCCGGTACCACTTCCTGCAA
AGCCTCTGTTCCATCACAGAGGCCAGGCTGCAGAGTGTGCGACAAGACGA
GAGATGGGAGAAAGGTGACGGGCGTCTCCTGCCCGAGTTCCAGTGTCACC
GCGACCTGTACGAGCACAAGCTCCGCCAGCAGGAGGCCCTGAGCAAGCAG
CTCCGCCGGCAGCAGCGCTCCATCAAAGAGAACGAGGGCTCGAGCACGGT
CCAGAGGCGCATGTTCGGCGGCCTGCACGCTCTTCTCAAGTGCAAGGTGG
CCCTCAACGGCGGGGGGGCGGGTGACGACCTCCTCGGCGATGGAGGAGGC
GTTTCACGTAGCAAGGGGGGGCGAGGCGGCGGCGGGGCGGGCGCGGGGCG
GGGCGGGATGGACGAGGCCTACCTCAAGGCTATCGACGCTCAGGGCGGCG
GCGGCGGCGGCGGCGGTGGCGGCGGGCGGGGCGGCGGTGGTGCACCCGAC
GTTATGACGCTCGAAGATCGAGACTGA
back to top