mRNA_Ecto-sp13_S_contig15117.3863.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15117.3863.1
Unique NamemRNA_Ecto-sp13_S_contig15117.3863.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15117.3863.1 vs. uniprot
Match: D7FHY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY2_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 6.250e-96
Identity = 170/174 (97.70%), Postives = 172/174 (98.85%), Query Frame = 1 
Query:    1 IRFVNLRFIVEEGASLIFDMPVTRVGPNSGQSEGAGDFVFDVAEGGSLTFNGKFRSSQVSNVRSVFYNRGSIEFKDDSLFNNNGNVFRSNXXXXXXXXXXXXXXXXXXXXXXDGEDSFVRFSKTATFIDNAGSFDGAWGCAIDNGGTAIFRDDAVFSDHDCDEGAAVSNTGKMR 522
            +RFVNLRFIVEEGASLIFDMPVTRVGPNSGQSEGAGDFVFDVAEGGSLTFNGKFR+SQVSNVRSVFYNRGSIEFKDDSLFNNNGNVFRSNXXXXXXXXXXXXXXXXXXXXX DGEDSFVRFSKTATFIDNAG FDGAWGCAIDNGGTAIFRDDAVFSDHDCDEGAAVSNTGKMR
Sbjct:   81 VRFVNLRFIVEEGASLIFDMPVTRVGPNSGQSEGAGDFVFDVAEGGSLTFNGKFRASQVSNVRSVFYNRGSIEFKDDSLFNNNGNVFRSNXXXXXXXXXXXXXXXXXXXXXNDGEDSFVRFSKTATFIDNAGFFDGAWGCAIDNGGTAIFRDDAVFSDHDCDEGAAVSNTGKMR 254
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BLAST of mRNA_Ecto-sp13_S_contig15117.3863.1 vs. uniprot
Match: A0A6H5KB90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB90_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 9.270e-48
Identity = 104/120 (86.67%), Postives = 106/120 (88.33%), Query Frame = 1 
Query:    1 IRFVNLRFIVEEGASLIFDMPVTRVGPNSG-QSEGAGDFVFDVAEGGSLTFNGKFRSSQVSNVRSVFYNRGSIEFKDDSLFNNNGNVFRSNXXXXXXXXXXXXXXXXXXXXXXDGEDSFV 357
            +RFVNLRFIVEEGASLIFDMPVTRVGPNS    E A DFVFDVAEGGSLTFNGKFRSSQV NVRSVFYNRGSIEFKDDSLFNNNGNVFR+N XXXXXXXXXXXXXXX      DGEDSFV
Sbjct:   81 VRFVNLRFIVEEGASLIFDMPVTRVGPNSVVDPESASDFVFDVAEGGSLTFNGKFRSSQVFNVRSVFYNRGSIEFKDDSLFNNNGNVFRNNEXXXXXXXXXXXXXXXYLAIVNDGEDSFV 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15117.3863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHY2_ECTSI6.250e-9697.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB90_9PHAE9.270e-4886.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15117contigEcto-sp13_S_contig15117:890..4252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size522
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionPectin lyase fold/virulence factor
Ec32 orthologEc-12_006330.1
Cds size522
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15117.3863.1prot_Ecto-sp13_S_contig15117.3863.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15117 890..4252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.7806616-CDS-Ecto-sp13_S_contig15117:889..9651681462804.7806616-CDS-Ecto-sp13_S_contig15117:889..965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15117 890..965 -
1681462804.7933645-CDS-Ecto-sp13_S_contig15117:1456..15081681462804.7933645-CDS-Ecto-sp13_S_contig15117:1456..1508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15117 1457..1508 -
1681462804.8120067-CDS-Ecto-sp13_S_contig15117:2288..23231681462804.8120067-CDS-Ecto-sp13_S_contig15117:2288..2323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15117 2289..2323 -
1681462804.8234766-CDS-Ecto-sp13_S_contig15117:2938..30791681462804.8234766-CDS-Ecto-sp13_S_contig15117:2938..3079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15117 2939..3079 -
1681462804.83942-CDS-Ecto-sp13_S_contig15117:3489..36171681462804.83942-CDS-Ecto-sp13_S_contig15117:3489..3617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15117 3490..3617 -
1681462804.851215-CDS-Ecto-sp13_S_contig15117:4162..42521681462804.851215-CDS-Ecto-sp13_S_contig15117:4162..4252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15117 4163..4252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15117.3863.1

>prot_Ecto-sp13_S_contig15117.3863.1 ID=prot_Ecto-sp13_S_contig15117.3863.1|Name=mRNA_Ecto-sp13_S_contig15117.3863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
IRFVNLRFIVEEGASLIFDMPVTRVGPNSGQSEGAGDFVFDVAEGGSLTF
NGKFRSSQVSNVRSVFYNRGSIEFKDDSLFNNNGNVFRSNEGTIKFRGDA
VFKNNWYLAIDNDGEDSFVRFSKTATFIDNAGSFDGAWGCAIDNGGTAIF
RDDAVFSDHDCDEGAAVSNTGKMR
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mRNA from alignment at Ecto-sp13_S_contig15117:890..4252-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15117.3863.1 ID=mRNA_Ecto-sp13_S_contig15117.3863.1|Name=mRNA_Ecto-sp13_S_contig15117.3863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15117:890..4252- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAGGTTTGTCAACCTTCGCTTCATCGTCGAGGAGGGCGCCTCCCTTAT
CTTCGACATGCCCGTCACAAGGGTTGGCCCCAACAGCGGCGTAAGTGCCC
GAACAAACACATCGAGAGTCAGAAGAACGGCAAGCTATCTATCCGCGTTA
GTGTGGAAGTCAGGGTACAGGTATCTTCCTGGTGGTAGTGACGCACATAC
AACCAGTACAGATCCGAGACCCTACGAACCGTATTCTCCAGATCTGAAGA
TGTCCATAAAGAAAGATCCTCCGCCTGCTGTGACCAGCCGGAGGGTGAAA
GAAAGGGTGGCCCCGAGGCTCACCCTCACCTTTCACCTTCCACAAAAACT
AGCAAGGCCGACCAACGTGGGCCGCGCTTGGTAGTTCCTCGGGATATTGA
AACGAGAGCAAAACACCTCCCCTGGTCAACGGTTATTCACCACTTCAGGG
ACCCTTACTCGTTCGAAGATGTTCTCATTAGCAGTATTGCCATCTACAGC
CGTGCCACCCGGACCTTATGAATGAATGAATTAATCAACAGCAAGCAAGG
ATATTAAACCTTTTTACCTGCTGCTGCCTTGCTGCTGCCTCTGCTGCTGC
TTCTGCTGCTGCTGCTGCTGCTGCTGCTTTGGCAGCAATCTGAGGGCGCG
GGCGACTTCGTGTTCGACGTGGCGGAGGGCGGAAGCTTGACCTTCAACGG
GAAATTCCGCTCCAGCCAGGTTTCCAACGTCCGATCGGTGTTCTACAACC
GCGGTTCGATCGAGTGAGTTGTTTTACCCTGCCTCTTCTTGACTTATACC
CCTGGCCACCAGCCGATCATCTCACTCCATCGGCCGGCTACTTACCGTAG
CTTGGACGTTGTGTGTGGTTGTTTGGGGGTTGGTGCCGTGTGCGGTTCGT
CGGTCGCAACAGCAATGCCACGGCTGCCGCAGCAGGCAAAATAACGTGGA
TCCCGTGCGAGAAAGGCGGTCGCATCTTCGGCCGTGATCTTGTTCCCCCT
GTCGCTCCTAGGTGCAGCTTCCTCAGTTGCTGTCGTTCCCTTTCCTGCTG
CTTCGTGTTCGTACCACAAGCCGATAACAACAACCTGAGGGCATGCCGTT
ATTTTCCGTGCGGTGTCCGCCTCGCCTTGCCCACTTGCTTGCTTGCGCTC
GTGCGGGGTTTGGGGGGAACAAGGTTCAAGGACGACTCTTTGTTCAACAA
CAACGGCAACGTCTTCCGGAGCAACGAGGGCACCATCAAGTTCCGCGGCG
ACGCCGTCTTCAAGAACAACTGGTACCTCGCCATCGACAACGACGGCGAG
GACTCCTTCGTGAGGTGTGCGTGTGTGTGCTCGGAGCCCTCCTTGGCTAG
CAAAGCAATGCTTTCGTCGTCTGCATGTACACACGCAAGTGTTTGTCTGC
CCCTCGTCTGTGTGTATCAGTCAGCCCGAGTGGCTCGATTGCGGTCTCGA
TCGACCGCGCTCACGGCTCGACGGCATATGTGTGCTACTGTGTGGACACC
TTTGTGGACATCAAGCTGTGTACGTTTCGGGCATAGTTGGACGCACTAAA
TTAATTTTATAGCTCGGTCATACGGCAAGGGGGAAGGTCTCCACACAGAA
TTCGCTTCTCCGCCTTCCTTTTCTGTTGTGCTCCCTACATGTTTTTTCAT
CTCGACACGTTTTCCGCCGTAAATCAGTCTTTTGCTCGTCGACACCACCA
ACGTGAAAGTTCTTTCTTGGTACCCACGAAATTGTCGCTCGGGGGGACTA
CCCACTACTCTTGTTAGGGGTGTGACTGCTGTGCGGCAATCGACCCCGGT
TCGTTATTGAAACATGTATTCCTAGCGCTACGGCCCCCGTTGGCGCCCCC
CCTCTCGTTTGTTGAACCTCTGCCTGGCGTGGGACGCACGCTGACGTGAT
GATGCTACTGCTACTACGGCGCCGCCAAGGTTCTCCAAGACGGCGACATT
TATCGACAACGCAGGTGGGCTGGAGGTGTTGGTTTTTGGGTGAGCGGATC
GAATCTGCGCTGCTCGAAGGTTCTATCAAGTCGAAAATAGGCCAGCACCG
GGGGATTGTCTTACCGATCATCGTCGAGACTCGCAATAAAATTCAAGTCT
GCTGTTGGACTGACACTTCGAGTAGAGTTGTGGAGGCTGTGCTACAGCAG
TCCCCCTCGTTCGTTGAACATTTTCCTCTTCGCGTTTCGCCTGAAACATA
CCATGTCGTTAGTATCTCCAATCTGGGTCGTGTTTGTCATCTGCGCGAGG
GAGCGGGGGGGCGGCGCATGGGTGGTTGCGACCGAAGACTTTGCCGCATG
CATGCAGCGCAATTTAGGATGCCAAGCGTGTGGTTGTCAGTGCACGGGTC
GGAACATACGGCATATTTGCGTCTATTTCATGACTCGTTTCAGTCTGCAG
TGAAGATTTTCCCACACCTCAAGTCGCCCCCCCCACCCTCCCCCTACTTG
ATGAGCGATGGTGATGGTGTACGTGTACATACGACTTGCACGATAGCGCG
AGTGCTGCTGGTTGGGAGGCTTGACTGACACCTCCTTGCCATTGCATGCA
CCCGTCGACTGCTTTGCTCTTTAGTGAACCTTATGCTCCTACATCAGTTG
TCCCTGTTACGCTACCGCTGCCTCTCACCTCTCTCTCCCTCCCATCGATT
ATTTTCTGCCCGCTGTTTTTGAAACCGCGATGTACTGAAAAAAACATGGT
GTGCATGGTGGCTTGCCCACGTGCCGCCCTCTCCGAAACAACAGGCTCCT
TCGACGGTGCCTGGGGGTGTGCCATCGACAACGGCGGGACCGCCATGTGA
GTCTTGACCGCAAGCCGCACACGTACGCGGTGCTTGTTGTTGCAGGTTCC
TGCTGTGCGTGCGGGTATTTGCGCGACAGTAGTGTGCGTTCGCCCTGGTA
GAGTGTTTCTCTCGCTAGATGATTGGACGAAACGAACGCCTTCTGTTCCG
TCGTGCATGCAGTGCAGACTTCGTGACGGCGCCTGTTGGAGTTTTGGGCG
TTCGGTGCGAAGCACGCATGACTGATACCGACAAACCGTGAACCAAACTC
AACTGGTTTTCGCCCTAGTTCCCCCGCGGCCATGTCAGGCATCACAAGCT
CGCGGGGTACCGTTGCAGCAGTGTAAATATAGGCAAAGTCCACGCAGCTC
AACAGTTTGAGTGAAGCATGCCGTCTGTTGCTGCACAGCACCCTCCCGCT
GCCCGCGCATCACCTCCTCCCACTATGTCTTGTGCCTCGCCATCCGTTTC
TCCACTTTCAACCGCGCTTTATTTGCCTCGAGAACAGCTTCCGGGACGAC
GCTGTTTTCTCCGACCACGACTGCGACGAGGGGGCTGCCGTCTCCAACAC
CGGGAAAATGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15117:890..4252-

>mRNA_Ecto-sp13_S_contig15117.3863.1 ID=mRNA_Ecto-sp13_S_contig15117.3863.1|Name=mRNA_Ecto-sp13_S_contig15117.3863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15117:890..4252- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAGGTTTGTCAACCTTCGCTTCATCGTCGAGGAGGGCGCCTCCCTTAT
CTTCGACATGCCCGTCACAAGGGTTGGCCCCAACAGCGGCCAATCTGAGG
GCGCGGGCGACTTCGTGTTCGACGTGGCGGAGGGCGGAAGCTTGACCTTC
AACGGGAAATTCCGCTCCAGCCAGGTTTCCAACGTCCGATCGGTGTTCTA
CAACCGCGGTTCGATCGAGTTCAAGGACGACTCTTTGTTCAACAACAACG
GCAACGTCTTCCGGAGCAACGAGGGCACCATCAAGTTCCGCGGCGACGCC
GTCTTCAAGAACAACTGGTACCTCGCCATCGACAACGACGGCGAGGACTC
CTTCGTGAGGTTCTCCAAGACGGCGACATTTATCGACAACGCAGGCTCCT
TCGACGGTGCCTGGGGGTGTGCCATCGACAACGGCGGGACCGCCATCTTC
CGGGACGACGCTGTTTTCTCCGACCACGACTGCGACGAGGGGGCTGCCGT
CTCCAACACCGGGAAAATGAGG
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