mRNA_Ecto-sp13_S_contig15115.3862.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15115.3862.1 vs. uniprot
Match: D7G848_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G848_ECTSI) HSP 1 Score: 215 bits (548), Expect = 5.400e-62 Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 1
Query: 1 DDSKVMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFECKTEHAIEA 339
D ++VMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFECKTEHAIEA
Sbjct: 909 DGAEVMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFECKTEHAIEA 1021
BLAST of mRNA_Ecto-sp13_S_contig15115.3862.1 vs. uniprot
Match: A0A6H5L102_9PHAE (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L102_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.010e-45 Identity = 82/87 (94.25%), Postives = 86/87 (98.85%), Query Frame = 1
Query: 1 DDSKVMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLK 261
D ++VMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRK++
Sbjct: 230 DGAEVMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKVR 316
BLAST of mRNA_Ecto-sp13_S_contig15115.3862.1 vs. uniprot
Match: A0A7S1CWT5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWT5_CYCTE) HSP 1 Score: 136 bits (343), Expect = 6.360e-37 Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 1
Query: 1 DDSKVMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFECK 318
D + ML SL AAGTGINLT ANH F+ D WWN++VESQAMDRVHRIGQ + VRVVR V DS+E+R++EIQEAK A+GKG + KL P+E+R+ R+++LR +F+ K
Sbjct: 146 DGPRFMLCSLHAAGTGINLTRANHIFMMDVWWNSAVESQAMDRVHRIGQKRDVRVVRFVMCDSIEERMIEIQEAKAAIGKGVMEKLTPEELRRVRISNLRMLFQVK 251
BLAST of mRNA_Ecto-sp13_S_contig15115.3862.1 vs. uniprot
Match: A0A7S0N3I8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N3I8_9CHLO) HSP 1 Score: 125 bits (315), Expect = 4.980e-34 Identity = 63/110 (57.27%), Postives = 87/110 (79.09%), Query Frame = 1
Query: 10 KVMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFECKTEHAIEA 339
+V+L S A GTG+NLT AN F+ D WWNA+VE QAMDRVHR+GQTKPV VVR VS +VE++IL +QEAK++LG+GAL++L +E+R+ R++DL+T+F T+ +EA
Sbjct: 35 RVLLVSTGAGGTGLNLTVANTVFMMDLWWNAAVEEQAMDRVHRLGQTKPVTVVRYVSEQTVEEKILALQEAKKSLGRGALQRLSAEEMRRMRLSDLKTLFS--TDDRLEA 142
BLAST of mRNA_Ecto-sp13_S_contig15115.3862.1 vs. uniprot
Match: F0Y018_AURAN (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y018_AURAN) HSP 1 Score: 124 bits (311), Expect = 5.600e-34 Identity = 60/100 (60.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query: 13 VMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFE 312
V+L SL GTG+NLT ANH F+ D WWNA+VE QAMDRVHR+GQT+PV VR+V+ +VE RIL+IQ+AK + GAL +L DEVRKAR+ D++ +FE
Sbjct: 1 VLLVSLKCGGTGLNLTRANHVFLLDTWWNAAVEEQAMDRVHRLGQTRPVTAVRLVADKTVESRILDIQQAKTLVSAGALARLSADEVRKARLGDIKRLFE 100
BLAST of mRNA_Ecto-sp13_S_contig15115.3862.1 vs. uniprot
Match: A0A7S1D0D4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0D4_CYCTE) HSP 1 Score: 130 bits (328), Expect = 1.170e-33 Identity = 62/103 (60.19%), Postives = 82/103 (79.61%), Query Frame = 1
Query: 10 KVMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFECK 318
+ ML SL A GTGINLT ANH ++ D WWN++VE+QAMDRVHRIGQ + VRVVR V DS+E+R++EIQ AK A+GKG + KL P E+RKAR+ DL+++F+ +
Sbjct: 250 RFMLCSLRAGGTGINLTRANHIYMMDTWWNSAVENQAMDRVHRIGQKRDVRVVRFVMTDSIEERMIEIQGAKAAIGKGTMEKLSPQELRKARIGDLKSLFQLE 352
BLAST of mRNA_Ecto-sp13_S_contig15115.3862.1 vs. uniprot
Match: A0A7S1VWT8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VWT8_9STRA) HSP 1 Score: 126 bits (317), Expect = 9.840e-32 Identity = 59/108 (54.63%), Postives = 86/108 (79.63%), Query Frame = 1
Query: 16 MLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFECKTEHAIEA 339
+L SL+AAGTGINLT NH F+ D WWN +VE QAMDRVHRIGQT+ VR+V+ V +S+E+R++++Q+AK ALGKG++ KL P+E+R+AR++ LR +F+ + + +A
Sbjct: 295 ILCSLLAAGTGINLTRGNHTFLMDLWWNKAVEDQAMDRVHRIGQTRDVRIVKFVMDNSIEERVIKMQDAKAALGKGSMEKLSPEEMRQARISALRDLFQMNSLDSSKA 402
BLAST of mRNA_Ecto-sp13_S_contig15115.3862.1 vs. uniprot
Match: A0A7S2WM36_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WM36_9STRA) HSP 1 Score: 121 bits (303), Expect = 2.040e-31 Identity = 57/100 (57.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query: 13 VMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFE 312
V+L SL A GTG+NLT ANH F+ D WWN SVE QA+DR+HRIGQ +PVR VR+V++ +VE+RI+++Q+AK L GAL KL +E+R AR+ LR +F+
Sbjct: 108 VLLISLRAGGTGLNLTRANHVFLLDMWWNRSVEDQALDRIHRIGQKRPVRAVRLVASQTVEERIIDMQQAKALLAAGALSKLSAEEIRAARLAQLRRLFD 207
BLAST of mRNA_Ecto-sp13_S_contig15115.3862.1 vs. uniprot
Match: A0A7S0TE54_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0TE54_9STRA) HSP 1 Score: 120 bits (300), Expect = 2.710e-31 Identity = 56/103 (54.37%), Postives = 77/103 (74.76%), Query Frame = 1
Query: 10 KVMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFECK 318
+ ML S+ A TGI LT ANH F+ D WWN + E+QAMDRVHRIGQ + VRV+R + DS+E+R +E+Q+AKEAL KG++ +LK ++ RKA +T L+ +FE K
Sbjct: 52 RFMLCSIRACNTGITLTRANHIFLMDTWWNVAEENQAMDRVHRIGQRRKVRVIRFIMKDSIEERFIEVQDAKEALAKGSMERLKKEDRRKASITALKDLFEMK 154
BLAST of mRNA_Ecto-sp13_S_contig15115.3862.1 vs. uniprot
Match: A0A7S3Q7T6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7T6_9STRA) HSP 1 Score: 126 bits (316), Expect = 1.500e-30 Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 1
Query: 1 DDSKVMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFECKTE 324
D + +L SL AAGTGINLT NHCF+ D WWN+S+E+QAMDR+HR+ QT+ V VVR V S+E+RI+ +QEAK KG L KLK DE RKA ++DLR +F TE
Sbjct: 882 DSPRFILCSLHAAGTGINLTRGNHCFMLDCWWNSSIENQAMDRIHRLNQTRNVHVVRFVMKGSIEERIVALQEAKSMQAKGVLEKLKGDEKRKALLSDLRVLFSLDTE 989 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15115.3862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15115.3862.1 >prot_Ecto-sp13_S_contig15115.3862.1 ID=prot_Ecto-sp13_S_contig15115.3862.1|Name=mRNA_Ecto-sp13_S_contig15115.3862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp MLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVback to top mRNA from alignment at Ecto-sp13_S_contig15115:1814..3551- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15115.3862.1 ID=mRNA_Ecto-sp13_S_contig15115.3862.1|Name=mRNA_Ecto-sp13_S_contig15115.3862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15115:1814..3551- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15115:1814..3551- >mRNA_Ecto-sp13_S_contig15115.3862.1 ID=mRNA_Ecto-sp13_S_contig15115.3862.1|Name=mRNA_Ecto-sp13_S_contig15115.3862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15115:1814..3551- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |