mRNA_Ecto-sp13_S_contig15104.3857.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15104.3857.1
Unique NamemRNA_Ecto-sp13_S_contig15104.3857.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15104.3857.1 vs. uniprot
Match: A0A6H5KG81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG81_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.670e-39
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = -3 
Query:  434 FSKAIRLRPGDASLYWGRSQSWERAGNPRKAVVDAGVGVCLRPRVAAGFARLSASFEAQGRHADVVRACFLVSR 655
            FSKAIRLRP DASLYWGRSQSWERAGNPRKAVVDAGVGVCLRPRVAAGFARLSA+FEAQGRHADVVRACFL  R
Sbjct:   40 FSKAIRLRPADASLYWGRSQSWERAGNPRKAVVDAGVGVCLRPRVAAGFARLSATFEAQGRHADVVRACFLGMR 113
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BLAST of mRNA_Ecto-sp13_S_contig15104.3857.1 vs. uniprot
Match: D7G7K5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K5_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.060e-21
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = -3 
Query:  434 AGNPRKAVVDAGVGVCLRPRVAAGFARLSASFEAQGRHADVVRACFLVSR 583
            AGNPRKAVVDAGVGVCLRPRVAAGFARLSASFEAQGRHADVVRACFL  R
Sbjct:    2 AGNPRKAVVDAGVGVCLRPRVAAGFARLSASFEAQGRHADVVRACFLGMR 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15104.3857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG81_9PHAE1.670e-3994.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7K5_ECTSI1.060e-2196.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15104contigEcto-sp13_S_contig15104:2729..3385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size657
Hectar predicted targeting categoryother localisation
Exons1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.3503942-UTR-Ecto-sp13_S_contig15104:2728..29361681462804.3503942-UTR-Ecto-sp13_S_contig15104:2728..2936Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15104 2729..2936 +
1681462804.3737607-UTR-Ecto-sp13_S_contig15104:3365..33851681462804.3737607-UTR-Ecto-sp13_S_contig15104:3365..3385Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15104 3366..3385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.3594818-CDS-Ecto-sp13_S_contig15104:2936..33651681462804.3594818-CDS-Ecto-sp13_S_contig15104:2936..3365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15104 2937..3365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15104.3857.1prot_Ecto-sp13_S_contig15104.3857.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15104 2937..3365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15104.3857.1

>prot_Ecto-sp13_S_contig15104.3857.1 ID=prot_Ecto-sp13_S_contig15104.3857.1|Name=mRNA_Ecto-sp13_S_contig15104.3857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MSFYAQVQCIKKYRNNEKPENNKTHDLPCRGSNHDNRPARNRTAAHHDRR
PGQFHRRCTLMTTHLFSPPRLYLLGSTHQEAGSNNVGVPALRLERRRQSG
ETGRHPWPQAHPDPRIYDRLPRISGPLPRLRPPPVKRGISRP*
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mRNA from alignment at Ecto-sp13_S_contig15104:2729..3385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15104.3857.1 ID=mRNA_Ecto-sp13_S_contig15104.3857.1|Name=mRNA_Ecto-sp13_S_contig15104.3857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15104:2729..3385+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGTTCTTGCTGCTGTCGCCACATCTCATACCCTGTCATCGACGAGAGC
AGCAGCATCCATCGCAGACGAACAACGACAAAGAGGCGCAAACCCGAAAG
GCCCACGACAACAGGTTGTTTGCGGCTTGGTGCAAGGCCGCCGGTCAAAA
CAAAAAATACCACAGGCACCGACCAATCGGAGAAACGTGTGCTGAGTTCG
GCGTCCAAATGTCGTTCTATGCGCAAGTGCAGTGTATTAAGAAATACCGA
AACAACGAAAAACCGGAAAACAACAAAACTCACGATCTACCATGCCGCGG
CAGCAACCACGACAACCGACCAGCAAGAAACCGAACGGCAGCACACCACG
ACCGTCGCCCCGGACAATTCCATCGCCGGTGTACGTTGATGACTACACAT
CTATTCTCCCCACCACGCCTTTATCTACTTGGTTCGACTCACCAAGAAGC
AGGCTCGAACAACGTCGGCGTGCCGGCCCTGCGCCTCGAACGACGCCGAC
AGTCGGGCGAAACCGGCCGCCACCCTTGGCCGCAAGCACACCCCGACCCC
CGCATCTACGACCGCCTTCCGAGGATTTCCGGCCCTCTCCCACGACTGAG
ACCTCCCCCAGTAAAGCGAGGCATCTCCCGGCCTTAATCGAATGGCCTTG
CTAAACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15104:2729..3385+

>mRNA_Ecto-sp13_S_contig15104.3857.1 ID=mRNA_Ecto-sp13_S_contig15104.3857.1|Name=mRNA_Ecto-sp13_S_contig15104.3857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15104:2729..3385+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTTCTATGCGCAAGTGCAGTGTATTAAGAAATACCGAAACAACGA
AAAACCGGAAAACAACAAAACTCACGATCTACCATGCCGCGGCAGCAACC
ACGACAACCGACCAGCAAGAAACCGAACGGCAGCACACCACGACCGTCGC
CCCGGACAATTCCATCGCCGGTGTACGTTGATGACTACACATCTATTCTC
CCCACCACGCCTTTATCTACTTGGTTCGACTCACCAAGAAGCAGGCTCGA
ACAACGTCGGCGTGCCGGCCCTGCGCCTCGAACGACGCCGACAGTCGGGC
GAAACCGGCCGCCACCCTTGGCCGCAAGCACACCCCGACCCCCGCATCTA
CGACCGCCTTCCGAGGATTTCCGGCCCTCTCCCACGACTGAGACCTCCCC
CAGTAAAGCGAGGCATCTCCCGGCCTTAA
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