mRNA_Ecto-sp13_S_contig151.3852.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig151.3852.1
Unique NamemRNA_Ecto-sp13_S_contig151.3852.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig151.3852.1 vs. uniprot
Match: A0A6H5JU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU28_9PHAE)

HSP 1 Score: 426 bits (1094), Expect = 5.310e-140
Identity = 222/248 (89.52%), Postives = 230/248 (92.74%), Query Frame = 2 
Query:    2 LPALMAFSRSLHEESHVPRKHLRLATELREGGVERKDVRSKRLLPADLVEGAEVEALFRKGFERYRAWIVRCHADDTFDVRFTPPPSLCADESSPRRGGEEAGEQRPELETSSRFSGSEEDWRSDAENSSLKAEEEWKATCHSVARFIGIPPDLGETETEVLEKAFDAIVNLVSPTTQAAFGSDETDAVGDARGSGGKGITTPIANQPPDSNRKDATQQGALARRLQREDGGHLERKNGVVVGAPDAD 745
            LPAL+AFSRSLHEESHVPRKHLRLATELREGGVERKDVRSKRLLPA+ VEGAEVEAL+RKGFERYRAWIVRCHADDTFDVRFTPPPSLC+D S PRRGGEE  EQRPELETSSRFSGSEEDW SDAENSSLKAEEEWKATC SVARFIGIPPDLGETETEVL+KAFDAIVNLVSPTTQAA GSD+ DAVGDARG GGKGITTP ANQPP+SNR+DATQQG LARR Q EDGGHLE KNGVV G  DAD
Sbjct:  601 LPALLAFSRSLHEESHVPRKHLRLATELREGGVERKDVRSKRLLPAEFVEGAEVEALYRKGFERYRAWIVRCHADDTFDVRFTPPPSLCSDGSFPRRGGEEPVEQRPELETSSRFSGSEEDWTSDAENSSLKAEEEWKATCDSVARFIGIPPDLGETETEVLQKAFDAIVNLVSPTTQAALGSDKADAVGDARGKGGKGITTPTANQPPNSNREDATQQGGLARRRQHEDGGHLETKNGVV-GTRDAD 847
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BLAST of mRNA_Ecto-sp13_S_contig151.3852.1 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI)

HSP 1 Score: 432 bits (1112), Expect = 4.450e-139
Identity = 228/254 (89.76%), Postives = 234/254 (92.13%), Query Frame = 2 
Query:    2 LPALMAFSRSLHEESHVPRKHLRLATELREGGVERKDVRSKRLLPADLVEGAEVEALFRKGFERYRAWIVRCHADDTFDVRFTPPPSLCADESSPRRGGEEAGEQRPELETSSRFSGSEEDWRSDAENSSLKAEEEWKATCHSVARFIGIPPDLGETETEVLEKAFDAIVNLVSPTTQAAFGSDETDAVGDARGSGGKGI------TTPIANQPPDSNRKDATQQGALARRLQREDGGHLERKNGVVVGAPDAD 745
            LPAL+AFSRSLHEESHVPRKHLRLATEL EGGVERKDVRSKRLLPADLVEGAEVEALFRKGFERYRAWIVRCHADDTFDVRFTPPPSLC+DE SPRRGG+EAGEQRPELETSSRFSGSEEDWRSDAENSSLKAEEEWKATC SVARFIGIPPDLGETETEVLEKAFDAIVNLVSPTTQAA  SDETDAVGDARG  GKGI      TTP ANQPP+ NR+DATQQG LARR Q EDGGHLERKNG+V G PDAD
Sbjct: 1018 LPALLAFSRSLHEESHVPRKHLRLATELGEGGVERKDVRSKRLLPADLVEGAEVEALFRKGFERYRAWIVRCHADDTFDVRFTPPPSLCSDEPSPRRGGQEAGEQRPELETSSRFSGSEEDWRSDAENSSLKAEEEWKATCDSVARFIGIPPDLGETETEVLEKAFDAIVNLVSPTTQAALDSDETDAVGDARGKSGKGIKGPKGITTPTANQPPNPNREDATQQGGLARRRQHEDGGHLERKNGLV-GTPDAD 1270
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig151.3852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU28_9PHAE5.310e-14089.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFK6_ECTSI4.450e-13989.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig151contigEcto-sp13_S_contig151:33811..35936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score430.6
Seed ortholog evalue4.8e-118
Seed eggNOG ortholog2880.D8LFK6
Model size746
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs29WS3@1,2RXQ6@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_001865.1
Cds size732
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462803.975774-CDS-Ecto-sp13_S_contig151:33810..341091681462803.975774-CDS-Ecto-sp13_S_contig151:33810..34109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig151 33811..34109 -
1681462803.9947174-CDS-Ecto-sp13_S_contig151:34399..344631681462803.9947174-CDS-Ecto-sp13_S_contig151:34399..34463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig151 34400..34463 -
1681462804.0038185-CDS-Ecto-sp13_S_contig151:34824..350251681462804.0038185-CDS-Ecto-sp13_S_contig151:34824..35025Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig151 34825..35025 -
1681462804.0156431-CDS-Ecto-sp13_S_contig151:35755..359231681462804.0156431-CDS-Ecto-sp13_S_contig151:35755..35923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig151 35756..35923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462804.0241132-UTR-Ecto-sp13_S_contig151:35923..359361681462804.0241132-UTR-Ecto-sp13_S_contig151:35923..35936Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig151 35924..35936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig151.3852.1prot_Ecto-sp13_S_contig151.3852.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig151 33811..35923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig151.3852.1

>prot_Ecto-sp13_S_contig151.3852.1 ID=prot_Ecto-sp13_S_contig151.3852.1|Name=mRNA_Ecto-sp13_S_contig151.3852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=244bp
MAFSRSLHEESHVPRKHLRLATELREGGVERKDVRSKRLLPADLVEGAEV
EALFRKGFERYRAWIVRCHADDTFDVRFTPPPSLCADESSPRRGGEEAGE
QRPELETSSRFSGSEEDWRSDAENSSLKAEEEWKATCHSVARFIGIPPDL
GETETEVLEKAFDAIVNLVSPTTQAAFGSDETDAVGDARGSGGKGITTPI
ANQPPDSNRKDATQQGALARRLQREDGGHLERKNGVVVGAPDAD
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mRNA from alignment at Ecto-sp13_S_contig151:33811..35936-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig151.3852.1 ID=mRNA_Ecto-sp13_S_contig151.3852.1|Name=mRNA_Ecto-sp13_S_contig151.3852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig151:33811..35936- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGCCAGCGCTGATGGCCTTCAGCCGCAGTCTTCACGAAGAGAGCCACG
TGCCACGGAAGCACCTGCGGCTCGCAACGGAGCTGCGGGAGGGCGGCGTG
GAGCGGAAGGATGTCCGCTCGAAGCGACTTTTGCCGGCTGATTTAGTGGA
AGGGGCAGAAGTGGAAGCGCTGTTTAGAAAGGTACGGTGGCAATGATACC
ACCAGAACGATACGATGTTGCCCTGCCGTATTCCGCAACTTGACAACCCT
GGATCACCAACGTAAAAAGCAACATGACGAAAATATGACGTGCTGGTAAC
GCTGCCCACACCCTCGCGGACAATAGCCGCAGAGGTGGCCGGTGATTTTT
TGTTGAAACTTCGACATCGCCCTCACAATGTGATGGTTATTTGTATGAAG
CGGACCTGGAGGTGGTTGAATCCGCGTCCCACTTTTTAACCCCAGAACGT
TACAGAGTCGTGTCATTCCGTGTTCGTAGCTCCTGGCTGGTAGCTGTCCC
ACAGTCAGATGAGTAGATGTTCAATCGTGTAGTAGTCAGTTGTCGCGCAA
ACGTTGTGGGTCCGTTTCGGGGGTGATGGTTACTCTCGGGTACTCGATGG
TGAGCTGGGTTACTGTAGTAGTACTCAGACCAGCGTTTCTCTCTCGACGG
CTGAGGATAGTGTGAACGAGGCGTTGTTCGCCGTGAATGGTAGAACCCCC
GTTGGCGAATAGCGCCTCCTTCGCACTATCCCACGTGCTACGTACTCGGC
CTCAGGCTTGGAAAGAGAAACGCTGGTCTGAGCACTACTAACCCTGCTCA
CCAACGAGACTTCGAGAGTGGCCGCCACCGACAATCCGCGCTCTCTCGTG
GCTGTTCTGGTTCTACACTTTTCTTGCCACAGCCATCTCACGCACTTCAA
CACATTCGCAGGGGTTTGAGCGATACCGCGCGTGGATCGTCAGATGCCAC
GCGGATGATACCTTCGACGTACGCTTCACGCCCCCCCCATCGCTTTGCGC
GGACGAGTCGTCTCCCCGTCGGGGGGGGGAGGAAGCAGGAGAGCAGCGAC
CCGAGTTGGAGACATCCTCTCGATTCTCCGGATCGGAGGAGGACTGGAGG
AGTGATGCAGAGGTACCATGTCGCGATCCATCACGCGAATACCTCGACTT
TGCACAGTACCGCCAAGGGAGGAGCTGCGTCTCACTGTGCCTCAACTTAA
AGAGAAAACTCATTTCGGGGGGGTTCTGTTGGAGGCACGGCATGATATTG
CTCTTATGCTCCCACCCATACGGCGCGAGGCTACCTGATCAGCTTGACCT
GAGGCAAATCACGTAACACTGCTGCTACGGACGCAACAAACCAGTACCAA
AATGTACATTGCGAACTGGTAGCAGGTGCTACCGTATGGATACGTGTGTT
GTTGTACACCCGTGTACGCCGATCCCTCACAACACCCATGCCTACACTCT
GTCTCGCTCATTCGATCGCCCAGAACTCTTCTCTGAAAGCGGAAGAAGAG
TGGAAGGCAACCTGTCACAGCGTCGCCCGATTTATTGGTGAGCACGCGGT
CTGTTGCACGACCGCGGGCGTTCATGGATCCTTAGGGCAACGGCCTTCTC
TCCCGCGTGACGCATGATTTAAGCGGCAGCAACAAATAGATAGCAGGAAA
GACAACGTGTTTCGCTCCGTACACTTTGCCGAAGAACATACACGTTTCTC
GCGTCAGGGGCGAAAATTTGGTTGATACGCCTTGCTGTGTGCTCTTTCTT
CTGGCCAGCCTGTTCGATCGTATTGGCACATTTATTTGTTCCCTGAACTC
ATCAATCCGTGATTCCCGCGGTGGCAGGCATTCCGCCGGACCTCGGAGAA
ACCGAGACAGAGGTACTCGAAAAGGCCTTCGACGCCATCGTCAACTTGGT
TTCGCCGACAACACAGGCGGCCTTCGGTAGCGACGAGACCGACGCAGTCG
GAGATGCGAGAGGCAGCGGCGGGAAAGGAATCACCACCCCCATCGCAAAT
CAACCGCCGGATTCCAACCGTAAAGATGCGACGCAGCAGGGGGCCCTTGC
TCGTAGACTGCAGCGAGAAGATGGGGGTCATCTCGAAAGAAAAAACGGTG
TTGTTGTTGGAGCCCCGGACGCTGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig151:33811..35936-

>mRNA_Ecto-sp13_S_contig151.3852.1 ID=mRNA_Ecto-sp13_S_contig151.3852.1|Name=mRNA_Ecto-sp13_S_contig151.3852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp13_S_contig151:33811..35936- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTTCAGCCGCAGTCTTCACGAAGAGAGCCACGTGCCACGGAAGCA
CCTGCGGCTCGCAACGGAGCTGCGGGAGGGCGGCGTGGAGCGGAAGGATG
TCCGCTCGAAGCGACTTTTGCCGGCTGATTTAGTGGAAGGGGCAGAAGTG
GAAGCGCTGTTTAGAAAGGGGTTTGAGCGATACCGCGCGTGGATCGTCAG
ATGCCACGCGGATGATACCTTCGACGTACGCTTCACGCCCCCCCCATCGC
TTTGCGCGGACGAGTCGTCTCCCCGTCGGGGGGGGGAGGAAGCAGGAGAG
CAGCGACCCGAGTTGGAGACATCCTCTCGATTCTCCGGATCGGAGGAGGA
CTGGAGGAGTGATGCAGAGAACTCTTCTCTGAAAGCGGAAGAAGAGTGGA
AGGCAACCTGTCACAGCGTCGCCCGATTTATTGGCATTCCGCCGGACCTC
GGAGAAACCGAGACAGAGGTACTCGAAAAGGCCTTCGACGCCATCGTCAA
CTTGGTTTCGCCGACAACACAGGCGGCCTTCGGTAGCGACGAGACCGACG
CAGTCGGAGATGCGAGAGGCAGCGGCGGGAAAGGAATCACCACCCCCATC
GCAAATCAACCGCCGGATTCCAACCGTAAAGATGCGACGCAGCAGGGGGC
CCTTGCTCGTAGACTGCAGCGAGAAGATGGGGGTCATCTCGAAAGAAAAA
ACGGTGTTGTTGTTGGAGCCCCGGACGCTGAC
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