mRNA_Ecto-sp13_S_contig15081.3839.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15081.3839.1
Unique NamemRNA_Ecto-sp13_S_contig15081.3839.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15081.3839.1 vs. uniprot
Match: D7G0E2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0E2_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 9.920e-23
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 MDPTNGVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQ 138
            MDPTNGVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQ
Sbjct:   49 MDPTNGVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQ 93
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BLAST of mRNA_Ecto-sp13_S_contig15081.3839.1 vs. uniprot
Match: A0A024UKG7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKG7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.040e-13
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 RMDPTNGVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQV 141
            ++DP  GVPNFFEKD A TY+R A+FDN+GED+L  L+ CI+FI+Q 
Sbjct:   43 KVDPVAGVPNFFEKDNAFTYRRCALFDNQGEDILTSLDGCIAFIDQA 89
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BLAST of mRNA_Ecto-sp13_S_contig15081.3839.1 vs. uniprot
Match: A0A3R6XQX9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XQX9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.700e-13
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 RMDPTNGVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQV 141
            ++DP  GVPNFFEKD   TY+R A+FDN+GED+L  L+ CI+FI+Q 
Sbjct:   43 KVDPVAGVPNFFEKDNVFTYRRCALFDNQGEDILTSLDGCIAFIDQA 89
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BLAST of mRNA_Ecto-sp13_S_contig15081.3839.1 vs. uniprot
Match: W4H1K2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H1K2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.290e-13
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 RMDPTNGVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQV 141
            ++DP  GVPNFFEKD   TY+R A+FDN+GED+L  L+ CI+FI+Q 
Sbjct:   43 KVDPVAGVPNFFEKDNVFTYRRCALFDNQGEDILTSLDGCIAFIDQA 89
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BLAST of mRNA_Ecto-sp13_S_contig15081.3839.1 vs. uniprot
Match: H3H273_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H273_PHYRM)

HSP 1 Score: 68.2 bits (165), Expect = 2.350e-12
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 RMDPTNGVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQV 141
            +MDP  GVPNFFEKD+A TY+R  +FDN+ ED+   LE CI+FI+Q 
Sbjct:   44 KMDPVAGVPNFFEKDKAFTYRRCPIFDNKAEDISGMLEGCIAFIDQA 90
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BLAST of mRNA_Ecto-sp13_S_contig15081.3839.1 vs. uniprot
Match: A0A5D6XQE4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQE4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.280e-12
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    4 MDPTNGVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQV 141
            +DP  GVPNFFEKD+ +TYKR  +FDN+ EDL   LE C++FIEQ 
Sbjct:   45 VDPVAGVPNFFEKDKTLTYKRCPIFDNKAEDLSGLLEGCVAFIEQA 90
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BLAST of mRNA_Ecto-sp13_S_contig15081.3839.1 vs. uniprot
Match: A0A067D610_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D610_SAPPC)

HSP 1 Score: 63.9 bits (154), Expect = 5.870e-11
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    4 MDPTNGVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQV 141
            +DP  GVPNFFE D   TY+R A++DN+GED+L  +E C++F++Q 
Sbjct:   44 VDPVAGVPNFFENDTRFTYRRCALYDNKGEDILTSIEGCLAFLDQA 89
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BLAST of mRNA_Ecto-sp13_S_contig15081.3839.1 vs. uniprot
Match: T0QIZ1_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QIZ1_SAPDV)

HSP 1 Score: 63.9 bits (154), Expect = 1.290e-10
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    4 MDPTNGVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQV 141
            +DP  GVPNFFE D   TY+R A++DN+GED+L  +E C++F++Q 
Sbjct:  181 VDPVAGVPNFFENDTRFTYRRCALYDNKGEDILTSIEGCLAFLDQA 226
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BLAST of mRNA_Ecto-sp13_S_contig15081.3839.1 vs. uniprot
Match: A0A7S2AKE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKE8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.340e-10
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   19 GVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQV 141
            G P FFEKD +MTY+RV +FDNRGED+L H+ES I+FI Q 
Sbjct:   19 GCPCFFEKDPSMTYQRVPIFDNRGEDVLIHMESSIAFITQA 59
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BLAST of mRNA_Ecto-sp13_S_contig15081.3839.1 vs. uniprot
Match: A0A1V9Y5L6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5L6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.340e-10
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 MDPTNGVPNFFEKDRAMTY-----KRVAVFDNRGEDLLQHLESCISFIEQV 141
            +DP  GVPNFFEKD + TY     +R A+FDN+GED+L  +E C++FI+Q 
Sbjct:  190 VDPVAGVPNFFEKDPSFTYGWKAYRRCALFDNQGEDILTSIEGCVAFIDQA 240
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15081.3839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G0E2_ECTSI9.920e-23100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A024UKG7_9STRA1.040e-1361.70Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3R6XQX9_9STRA1.700e-1359.57Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
W4H1K2_9STRA4.290e-1359.57Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
H3H273_PHYRM2.350e-1259.57Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A5D6XQE4_9STRA5.280e-1260.87Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A067D610_SAPPC5.870e-1152.17Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0QIZ1_SAPDV1.290e-1052.17Uncharacterized protein n=2 Tax=Saprolegnia diclin... [more]
A0A7S2AKE8_9STRA3.340e-1065.85Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1V9Y5L6_9STRA6.340e-1052.94Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15081contigEcto-sp13_S_contig15081:4005..4157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score98.2
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog2880.D7G0E2
Preferred nameDUSP28
Model size153
KEGG koko:K04459,ko:K14165
KEGG Pathwayko04010,map04010
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
EC3.1.3.16,3.1.3.48
Cds size150
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.9928534-UTR-Ecto-sp13_S_contig15081:4004..40071681462802.9928534-UTR-Ecto-sp13_S_contig15081:4004..4007Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15081 4005..4007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462803.0036945-CDS-Ecto-sp13_S_contig15081:4007..41571681462803.0036945-CDS-Ecto-sp13_S_contig15081:4007..4157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15081 4008..4157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15081.3839.1prot_Ecto-sp13_S_contig15081.3839.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15081 4008..4157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15081.3839.1

>prot_Ecto-sp13_S_contig15081.3839.1 ID=prot_Ecto-sp13_S_contig15081.3839.1|Name=mRNA_Ecto-sp13_S_contig15081.3839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MDPTNGVPNFFEKDRAMTYKRVAVFDNRGEDLLQHLESCISFIEQVLWP*
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mRNA from alignment at Ecto-sp13_S_contig15081:4005..4157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15081.3839.1 ID=mRNA_Ecto-sp13_S_contig15081.3839.1|Name=mRNA_Ecto-sp13_S_contig15081.3839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15081:4005..4157+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGATGGACCCCACTAACGGCGTGCCCAATTTCTTCGAGAAGGATCGCGC
CATGACGTACAAGCGGGTGGCGGTGTTTGACAACCGTGGGGAAGACCTGC
TGCAGCATCTGGAGTCTTGCATCTCGTTTATCGAACAGGTACTTTGGCCG
TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15081:4005..4157+

>mRNA_Ecto-sp13_S_contig15081.3839.1 ID=mRNA_Ecto-sp13_S_contig15081.3839.1|Name=mRNA_Ecto-sp13_S_contig15081.3839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15081:4005..4157+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCCCACTAACGGCGTGCCCAATTTCTTCGAGAAGGATCGCGCCAT
GACGTACAAGCGGGTGGCGGTGTTTGACAACCGTGGGGAAGACCTGCTGC
AGCATCTGGAGTCTTGCATCTCGTTTATCGAACAGGTACTTTGGCCGTAG
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