mRNA_Ecto-sp13_S_contig15069.3826.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15069.3826.1
Unique NamemRNA_Ecto-sp13_S_contig15069.3826.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15069.3826.1 vs. uniprot
Match: D8LF57_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF57_ECTSI)

HSP 1 Score: 334 bits (857), Expect = 6.260e-116
Identity = 163/172 (94.77%), Postives = 166/172 (96.51%), Query Frame = 1 
Query:    1 MMKPTARGPLFFGVVVLVLAASGEAFFAAAPAPAVFKSCAFRTTTTNVNAVRHGGPQDQEDPELSVFDAGETAVSWEDYKKQKPDEFKLDAVDEMQCWKTDECPVEDEKKFTKAWEIHSAERNPTMETHFDSEGEWEEESKGAWSKKWHEDVGEDDLHEDIVSPAAKDGYGI 516
            MMKPTARG LFFGVV+LVLAASGEAFF AAPAPAVFKS A+R TTTNVNAVRHGG QDQ+DPELSVFDAGETAVSWEDYKKQKPDEFKLDAVDEMQCWKTDECPVEDEKKFTKAWEIHSAERNPTMETHFDSEGEWEEESKGAWSKKWHEDVGEDDLHED VSPAAKDGYGI
Sbjct:    1 MMKPTARGRLFFGVVLLVLAASGEAFFTAAPAPAVFKSRAYRITTTNVNAVRHGGQQDQQDPELSVFDAGETAVSWEDYKKQKPDEFKLDAVDEMQCWKTDECPVEDEKKFTKAWEIHSAERNPTMETHFDSEGEWEEESKGAWSKKWHEDVGEDDLHEDTVSPAAKDGYGI 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15069.3826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF57_ECTSI6.260e-11694.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15069contigEcto-sp13_S_contig15069:314..3405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size519
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001770.1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.1386824-CDS-Ecto-sp13_S_contig15069:313..4011681462802.1386824-CDS-Ecto-sp13_S_contig15069:313..401Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15069 314..401 -
1681462802.1496253-CDS-Ecto-sp13_S_contig15069:907..9391681462802.1496253-CDS-Ecto-sp13_S_contig15069:907..939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15069 908..939 -
1681462802.1592555-CDS-Ecto-sp13_S_contig15069:1421..15561681462802.1592555-CDS-Ecto-sp13_S_contig15069:1421..1556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15069 1422..1556 -
1681462802.1799498-CDS-Ecto-sp13_S_contig15069:3141..34051681462802.1799498-CDS-Ecto-sp13_S_contig15069:3141..3405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15069 3142..3405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15069.3826.1prot_Ecto-sp13_S_contig15069.3826.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15069 314..3405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15069.3826.1

>prot_Ecto-sp13_S_contig15069.3826.1 ID=prot_Ecto-sp13_S_contig15069.3826.1|Name=mRNA_Ecto-sp13_S_contig15069.3826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MMKPTARGPLFFGVVVLVLAASGEAFFAAAPAPAVFKSCAFRTTTTNVNA
VRHGGPQDQEDPELSVFDAGETAVSWEDYKKQKPDEFKLDAVDEMQCWKT
DECPVEDEKKFTKAWEIHSAERNPTMETHFDSEGEWEEESKGAWSKKWHE
DVGEDDLHEDIVSPAAKDGYGI*
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mRNA from alignment at Ecto-sp13_S_contig15069:314..3405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15069.3826.1 ID=mRNA_Ecto-sp13_S_contig15069.3826.1|Name=mRNA_Ecto-sp13_S_contig15069.3826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3092bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15069:314..3405- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAAGCCAACCGCTCGTGGTCCTCTTTTCTTTGGCGTAGTGGTTCT
GGTACTGGCCGCCTCCGGAGAGGCTTTCTTCGCGGCTGCCCCTGCTCCCG
CCGTCTTCAAGTCCTGCGCTTTCAGGACCACCACCACCAATGTTAACGCG
GTCCGCCACGGAGGACCGCAGGACCAGGAGGACCCGGAACTGAGCGTGTT
CGACGCGGGCGAAACCGCAGTTTCTTGGGAAGACTACAAAAAGCAGAAGC
CAGATGAATTCAAGGTGTGTCCCAGCACATGGAAAAATAGAGCCAGCGGA
TATGCATATAGAGGCCCACAAGACAACTCAACCTTGATGTAGTCTAGCTC
CCCCTGGCGTGATGACTGTAGATGCGCACGCAGCAGTGGGTACACGCAGG
GCAATGCCGCGGTTATAAGCCAAGATCTGGATGTTCTGGGTTCACTTTTC
CTGTTCGTTTGTCTCCAGAACGTGAAGCTCGAATCCTCAATCCCCCCGTG
AGTTCTGGTACAAATACAGGTGTAGCTCCGACGACGTGGAGCAGTGGGCG
GGGTGTTGCGGGTAGCAAATGCTAACCCCTCATTGGTGTCCGTCGCACAT
GTACCTATTGTGGGTACAGCACAGGCCTGCCAATAGTCTTGTCGAATGTT
TACACTCAGATCCAACATGGATCCACGAATAGGAGAGGGGCCCAGACACG
AACGGGCGACCCTCGATTCCAATGTCAAGGGCCAGAGGGTGTCCTCCTCA
CCTGCGCGAGCAAAGGGGACAAGCTGCCTCTTGTTTTCTCACTCGTGACG
GTGGAAAGAAGTTTATGAAATTGGCCCGCTCTCGTTGAAAGTGTATACGG
AGTATGCATGTAGTGAAGCCCGTCTTGTAACAACAACAACGATTCTACAT
CAAAGCATTTCTGTAGCTCGTGCGACGACTGTAGTCTAGACTACACCCTT
TGTGTGTTCTTAGTAAACCGCCTCTTTGTACAACAAAGGTTGTTATTTGC
GACATGTCCTGCCCCCCTAATACTGGCGCCTTTGTATCGCGAAAGTATCA
ATAACCCCCCCACCCTGCAACCCCGTCCCATTTCTTCAAAATAGCTTGTG
AAAACCCCACATCTCTACCACGATCCTTGTCTCACTTCTTGCGGGCTTAC
ATCCCTCTTTCGACTGATCACACGCCAACCTTTGGCCCAGACTACAGACA
GTAGTAAATGCAGGTGTATTGTCTGAATTTCCACAGGGCGCGATTGAGTT
GCGACACCCCACTGTCACCGCTCGCGGAATAGAATGACCCACTTGCGATG
AGGACCAATGGGAGCCGAAGTGCGAAGTATGGTGGACTGAAAAACTGGAT
CGAGTTCGCGGAAGGGAGGTAGCATCTTCGTTTCCCGCGCCGCGCGTTTT
CTCCCGCGAAGGGCCCGTCGTTCGTGGGTTCGCACTGTTATCTGCCATTT
CAATGCTATCAATTGCGAAACCTACAGCAGTGTTCCGTGGAGACCAACTT
GCGCCTCTCATTGTACATGTCGCAGTCCGCGTGGTACTCCATATCAGTGC
TAGTACTCCGAAGGGGAGAACCAGAACGAGAATCAACCGACTTGTTCAGC
TCACACCAACCGGGACAATGTTGTACTCTACGACCCACCGTTGTAGATAG
CAAAGAATGAAAGTCGAGTGCCAGCACATCTACGGGTAGACGCAATCAGC
GTGATGACTCGAGGAAGGAGACCGTGAGAACTAATTCTTCATTTGATCAA
GGCCGGCAGCCCAAAGCATCACCGCTTTCTGCACGTAACCTGCACTTGTT
TGTTCTTCGCATTCGCAACACCATTTTTTACGGATCACCGGCACATCAGC
TAGACGCGGTGGACGAGATGCAGTGCTGGAAGACGGACGAGTGTCCCGTC
GAAGACGAGAAGAAGTTCACCAAGGCCTGGGAGATACACAGCGCCGAAAG
GAACCCCACCATGGAGACGCACTTCGACAGCGAGGTGCGACGACGTGTTG
TCTTCGCGCCCTCTCTCTGCGCATACCTAACACTGCGTGGCGGCAGGTGG
TAGCATGGTGAATCATTTACTTGAGAACGAAAAATTTTATTAGCTTTTCG
CGAGACTCGCTTTTTCCCTTTGATTGTGAGGCGGCAACCAAAGGGCACAC
CTGTACTGCAATTGGTTGTCATGTCGGGCTCTTGGCTGACGTTTTGGCTG
CAACTGGATTGCGACGGGTGGCTAGCTGGTGAGAAATAAATGAATGCACC
GAAGCGTCAAGCACGTAGCCAGCACACACAAACGAGAGCAGCCCATAGAG
CAGCCCATAGAGCTGCCCACCTGTTTCTGCTTCGCGAATCGAATTTATCG
TGTGAGTACTAATCGCGCGCGCGAGGTTGACTGCAATCGTTTTCGCTTCG
TCTTTGTCGGAACTCCATACCCCGCTACTCCTGCCTTCGCGTTGACCGTG
CGAAATCGGAGCACAGGGCGAGTGGGAGGAAGAAAGCAAGGGTGCATGGT
GAGGAAGCTTGTCTTTTGTCTGTACCGTGTTTCTACGCTCCCATCCTCCT
CGTAACAGCCGTGTCGCTCGACTAACAAGGGTTGAAGAGGGAGAAGTAGC
GCTCACCACTTGAACGAAGTTTCCTCTCCACAATCTAGACAATCCATTAT
TCGCAGTCTGTATCGCTAGTTTTTAACGTTGGTTGACCTTGAAGCCTGAC
ACTCGCGCCCGAGAAAATGAGTGACCAACATGCCGAGGGTCTTCCTTTCC
TTGTCTTCGAGGGACGTTGGCGCTGTAGAGGAGATCAGTGCATGGATCAA
CTTTCGTTGCCCCACCGAGACTGAGGGATTTTTACACTGGTCAGTCAGTT
GGCGGGGTCGATGTCAACAACGAAGACACACACGAACAACCTGTTTCTCG
TGCCTTGCGTGTCGTGGTCTGTGCCGCTGGCTGTACACTGATATCGCATC
GCACAAAATCGGCTTTCCCCACTAATGGTGGAAACCAAAACATCAAAATC
TCAGGTCGAAGAAGTGGCACGAGGACGTCGGAGAGGACGACCTTCACGAG
GACATCGTGTCGCCCGCAGCCAAGGACGGATACGGCATCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15069:314..3405-

>mRNA_Ecto-sp13_S_contig15069.3826.1 ID=mRNA_Ecto-sp13_S_contig15069.3826.1|Name=mRNA_Ecto-sp13_S_contig15069.3826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15069:314..3405- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAAGCCAACCGCTCGTGGTCCTCTTTTCTTTGGCGTAGTGGTTCT
GGTACTGGCCGCCTCCGGAGAGGCTTTCTTCGCGGCTGCCCCTGCTCCCG
CCGTCTTCAAGTCCTGCGCTTTCAGGACCACCACCACCAATGTTAACGCG
GTCCGCCACGGAGGACCGCAGGACCAGGAGGACCCGGAACTGAGCGTGTT
CGACGCGGGCGAAACCGCAGTTTCTTGGGAAGACTACAAAAAGCAGAAGC
CAGATGAATTCAAGCTAGACGCGGTGGACGAGATGCAGTGCTGGAAGACG
GACGAGTGTCCCGTCGAAGACGAGAAGAAGTTCACCAAGGCCTGGGAGAT
ACACAGCGCCGAAAGGAACCCCACCATGGAGACGCACTTCGACAGCGAGG
GCGAGTGGGAGGAAGAAAGCAAGGGTGCATGGTCGAAGAAGTGGCACGAG
GACGTCGGAGAGGACGACCTTCACGAGGACATCGTGTCGCCCGCAGCCAA
GGACGGATACGGCATCTGA
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