mRNA_Ecto-sp13_S_contig15068.3825.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15068.3825.1
Unique NamemRNA_Ecto-sp13_S_contig15068.3825.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15068.3825.1 vs. uniprot
Match: D7G5A2_ECTSI (Probable chromatin remodelling complex ATPase chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A2_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 4.940e-23
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 GWGNWRKVRACILASPRFTFDYYLRSLSETALGKHCEQLMKSSEK 135
            GWGNWRKVRACILASPRFTFDYYLRSLSETALGKHCEQLMKSSEK
Sbjct: 1051 GWGNWRKVRACILASPRFTFDYYLRSLSETALGKHCEQLMKSSEK 1095
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BLAST of mRNA_Ecto-sp13_S_contig15068.3825.1 vs. uniprot
Match: A0A7S2G4P9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4P9_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.530e-11
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GWGNWRKVRACILASPRFTFDYYLRSLSETALGKHCEQLMKSSEK 135
            G+GNW KVRA I A PRF FDY+LRSL+ T LGK CE LM+ + K
Sbjct:   22 GYGNWAKVRAEIRACPRFKFDYFLRSLNATDLGKRCETLMREATK 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15068.3825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5A2_ECTSI4.940e-23100.00Probable chromatin remodelling complex ATPase chai... [more]
A0A7S2G4P9_9STRA6.530e-1164.44Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15068contigEcto-sp13_S_contig15068:86..220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score100.5
Seed ortholog evalue2.1e-19
Seed eggNOG ortholog2880.D7G5A2
Model size135
KEGG koko:K11654
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
Cds size135
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462802.095971-CDS-Ecto-sp13_S_contig15068:85..2201681462802.095971-CDS-Ecto-sp13_S_contig15068:85..220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15068 86..220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15068.3825.1prot_Ecto-sp13_S_contig15068.3825.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15068 86..220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15068.3825.1

>prot_Ecto-sp13_S_contig15068.3825.1 ID=prot_Ecto-sp13_S_contig15068.3825.1|Name=mRNA_Ecto-sp13_S_contig15068.3825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
GWGNWRKVRACILASPRFTFDYYLRSLSETALGKHCEQLMKSSEK
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mRNA from alignment at Ecto-sp13_S_contig15068:86..220-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15068.3825.1 ID=mRNA_Ecto-sp13_S_contig15068.3825.1|Name=mRNA_Ecto-sp13_S_contig15068.3825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15068:86..220- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTGGGGCAACTGGCGCAAGGTGCGGGCGTGCATCCTGGCCTCACCCCG
CTTCACGTTCGACTACTACCTGCGCTCGCTGTCCGAGACCGCTTTAGGGA
AGCACTGCGAGCAGCTCATGAAGTCTTCGGAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15068:86..220-

>mRNA_Ecto-sp13_S_contig15068.3825.1 ID=mRNA_Ecto-sp13_S_contig15068.3825.1|Name=mRNA_Ecto-sp13_S_contig15068.3825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15068:86..220- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTGGGGCAACTGGCGCAAGGTGCGGGCGTGCATCCTGGCCTCACCCCG
CTTCACGTTCGACTACTACCTGCGCTCGCTGTCCGAGACCGCTTTAGGGA
AGCACTGCGAGCAGCTCATGAAGTCTTCGGAGAAG
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