mRNA_Ecto-sp13_S_contig15046.3815.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15046.3815.1
Unique NamemRNA_Ecto-sp13_S_contig15046.3815.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15046.3815.1 vs. uniprot
Match: A0A6H5KWQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ4_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 1.290e-100
Identity = 210/225 (93.33%), Postives = 217/225 (96.44%), Query Frame = 1 
Query:    1 VLATEAEARIHAARETALAAETSLEATREEARDLRKNHENAMIALAAEMGEKQRRGKEGVAVRLQEKKAKRLAELKKAKAKGDEVQDELARLEQEAEREQKQVEADIEQEAAILEQAEAKMLAKREAEARATRLTAESSRRAGELELQKIRQGHEENQRILEEAQENKRKLRQRVLAERLERRRQEKMNAAIAALESAEAQQKLAASLEQERVAARAELEEELVK 675
            VLATEAEARIHAARETALAAETSLEAT+EEARDLRKNHENAMIALAAEM +KQR+GKEGVA RLQ KKA+RLAELKKAKAK DEVQDELARLEQEAEREQK+VEADIEQEAAILEQAEAKMLA+REAEARATRLTAESSRRAGELELQKIRQ H+ENQRILEEAQENKRKLRQR LAERLERRRQEKMNAAIAA ESAEAQQKLAASLEQERVAA AELEEELVK
Sbjct: 1856 VLATEAEARIHAARETALAAETSLEATQEEARDLRKNHENAMIALAAEMAKKQRQGKEGVAARLQAKKARRLAELKKAKAKDDEVQDELARLEQEAEREQKEVEADIEQEAAILEQAEAKMLARREAEARATRLTAESSRRAGELELQKIRQAHDENQRILEEAQENKRKLRQRALAERLERRRQEKMNAAIAASESAEAQQKLAASLEQERVAASAELEEELVK 2080
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BLAST of mRNA_Ecto-sp13_S_contig15046.3815.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 1.760e-93
Identity = 196/208 (94.23%), Postives = 199/208 (95.67%), Query Frame = 1 
Query:    1 VLATEAEARIHAARETALAAETSLEATREEARDLRKNHENAMIALAAEMGEKQRRGKEGVAVRLQEKKAKRLAELKKAKAKGDEVQDELARLEQEAEREQKQVEADIEQEAAILEQAEAKMLAKREAEARATRLTAESSRRAGELELQKIRQGHEENQRILEEAQENKRKLRQRVLAERLERRRQEKMNAAIAALESAEAQQKLAASL 624
            VLATEAEARIHAARETALAAETSLE T+EEARDLRKNHENAMIALAAEM EKQRRGKEGV  RLQEKKAKRLAELKK KAK DEVQDELARLEQEAEREQKQVEADIEQEAAILEQAEAKMLAKR AEARATRLTAESSRRAGELELQKIRQ HEENQRILEEAQE+KRKLRQR LAERLERRRQEKMNA+IAALESAEAQQKLAASL
Sbjct: 5380 VLATEAEARIHAARETALAAETSLEVTQEEARDLRKNHENAMIALAAEMAEKQRRGKEGVGARLQEKKAKRLAELKKVKAKDDEVQDELARLEQEAEREQKQVEADIEQEAAILEQAEAKMLAKRAAEARATRLTAESSRRAGELELQKIRQAHEENQRILEEAQESKRKLRQRTLAERLERRRQEKMNASIAALESAEAQQKLAASL 5587
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15046.3815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWQ4_9PHAE1.290e-10093.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR26_ECTSI1.760e-9394.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15046contigEcto-sp13_S_contig15046:477..3017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score312.0
Seed ortholog evalue2.3e-82
Seed eggNOG ortholog2880.D8LR26
Model size677
KEGG koko:K16726,ko:K17751
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0161@2759,KOG1217@1,KOG1217@2759,KOG3529@1,KOG3529@2759
Cds size675
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15046.3815.1prot_Ecto-sp13_S_contig15046.3815.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15046 477..3016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.5620372-CDS-Ecto-sp13_S_contig15046:476..6711681462801.5620372-CDS-Ecto-sp13_S_contig15046:476..671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15046 477..671 +
1681462801.5731692-CDS-Ecto-sp13_S_contig15046:1090..12071681462801.5731692-CDS-Ecto-sp13_S_contig15046:1090..1207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15046 1091..1207 +
1681462801.5831082-CDS-Ecto-sp13_S_contig15046:1624..16961681462801.5831082-CDS-Ecto-sp13_S_contig15046:1624..1696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15046 1625..1696 +
1681462801.594571-CDS-Ecto-sp13_S_contig15046:1947..20371681462801.594571-CDS-Ecto-sp13_S_contig15046:1947..2037Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15046 1948..2037 +
1681462801.6056364-CDS-Ecto-sp13_S_contig15046:2449..25841681462801.6056364-CDS-Ecto-sp13_S_contig15046:2449..2584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15046 2450..2584 +
1681462801.6170986-CDS-Ecto-sp13_S_contig15046:2950..30161681462801.6170986-CDS-Ecto-sp13_S_contig15046:2950..3016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15046 2951..3016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15046.3815.1

>prot_Ecto-sp13_S_contig15046.3815.1 ID=prot_Ecto-sp13_S_contig15046.3815.1|Name=mRNA_Ecto-sp13_S_contig15046.3815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp
VLATEAEARIHAARETALAAETSLEATREEARDLRKNHENAMIALAAEMG
EKQRRGKEGVAVRLQEKKAKRLAELKKAKAKGDEVQDELARLEQEAEREQ
KQVEADIEQEAAILEQAEAKMLAKREAEARATRLTAESSRRAGELELQKI
RQGHEENQRILEEAQENKRKLRQRVLAERLERRRQEKMNAAIAALESAEA
QQKLAASLEQERVAARAELEEELVK
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mRNA from alignment at Ecto-sp13_S_contig15046:477..3017+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15046.3815.1 ID=mRNA_Ecto-sp13_S_contig15046.3815.1|Name=mRNA_Ecto-sp13_S_contig15046.3815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2541bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15046:477..3017+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCTCGCCACGGAGGCCGAGGCTCGCATCCACGCCGCTCGCGAAACTGC
CCTTGCCGCGGAAACAAGTCTAGAGGCGACGCGGGAAGAAGCGCGCGACC
TCCGCAAGAACCACGAGAATGCCATGATCGCGCTTGCCGCCGAAATGGGC
GAGAAACAGCGGCGAGGCAAGGAAGGCGTAGCGGTCAGGCTACAGGTAAA
GCAACGCGAGGCTGACGTATCGTTGCACTGGGGTATGGAAAGTTCAATCC
ACGTGTAGTGTACAAGATGAACCCATATCGACGTTTACAGAGTTCTTCAA
AGTGATCACCGTACGATGGGGTAGGGTATGACGATGCCCAAGGAATAACA
TCATGGCTAGATTCGTAGCAGTCAGAGCTGGTCATGCTGGAGTATTGACG
AAGCTCTGGTGGGCAGGTTGCACCGGTCAGGTGCGGATTCTTCGGTCTCG
GTAAACACTGACAACCTGACACAACGCGTGTGCATCCGATGACCTACGTG
CACCTTTGCTCTCGGCATGCGCACGCCATATTCTGACCACTGCGAGGTTC
GTTTTTCTCATCACCTCGTTTGACGATCGATCCGCTATTTTCCCCTTCGT
CTCTTCCGAAATAGGAAAAGAAGGCTAAGCGGCTGGCAGAGTTGAAGAAA
GCCAAGGCGAAGGGTGATGAGGTGCAGGACGAGCTCGCCCGACTGGAGCA
AGAAGCGGAGAGAGAGCAGAAACAGGTTGAGGTAAGTACGTGATTTTCAG
ACTTAGGTTCGCAGATAATCGTGGATCAACCTGGACTCGTTCGCGGCTTG
TTTTGTTCATGGCCTGCAGCCGCGCACGCGACGTTACGTTTGTATGACAA
GCGAACTACCTGGCGATTGAGAAGAACAAGTGTCAAGATTGCTTAAGCTG
CGGCGGAGAATCACAACTTACAAGCTGGATACTCACAGTCGTTACACCAT
CATTCGTTCGTTTGGATTTTTGCAGCGTTTCGCCCAACAGCTTCATGCTC
TTTGACCTTGGGTATTGAGCACCAGAAGGTTTAATGCAACGGGGCACGTA
TCCGTTTCACAGTTAGTTGATGAATCTTACTGGGAAGGCTGTACGTCAAT
CCACACCTGAAACTGTCCACTTGGCAACCATGCGTTTGCTGCTAACAGGC
GGATATCGAGCAAGAGGCCGCGATTCTTGAACAGGCTGAAGCGAAGATGC
TCGCCAAGCGAGAAGCCGAGGTAGGTGAACAACGGAGAAAGTCGATCTGA
ACAGGCAAACTCTCCTCTACAAACAAGGCTGCCGAGAAACAGCAGTTTCA
GGTTTTCAGATGTCACCGATCAACATATGTGTCTGGCGCTCTCTCCTGCT
CCGTGCTCGACGTTTTCCCATGCTCTTCAACTAGCCTTCGAATCTTGGGT
CCACCCGTGGTTTTCCTGAAATCTTCTCATCAGTCAACCAAAACTGTCTC
TCATGCCGCTCTTTGTTGTAGGCTCGCGCCACCCGACTGACGGCTGAAAG
TTCTAGGAGAGCAGGCGAACTAGAGCTCCAGAAGATACGTCAGGGGCATG
AAGAAAACCAGGTGAAAATTCGGGATGCATACAAGGAGAGGAAGGAGTGT
AGGCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCAACATTGTGACACTTTGCAGAGGATTCTAGAAGAAGCTCAGGAGAAC
AAGCGGAAGCTTCGTCAGCGCGTGTTGGCGGAGAGGCTGGAGCGCCGACG
CCAGGAGAAGATGAACGCCGCCATCGCTGCTTTAGAAAGCGCCGAAGCTC
AGCAGAAGGTGAATGCTGGTACTCCATGTGTTGTGTGTTTGGAAATGGTG
TATAGAGGATCGTTGGTTAACGGGTTCGGGATACTGAGTGAATCCTAAAC
CGGTGGAACGTATCAAATCTCTGTGGCCTGACGTCACTTACTTCCACGCC
GACTACGTTTCCCCCTGCCTTCTGTCTCTTCCCCCTTCGGTGTACTTCAC
CATGTTTTTTACTTTCTCTCGGCTTCGTCAAGTGAGGTATCAAACATGGA
AGATGGTCGCAGAAATATTGGTGGTGCAGTGTCCTTCATCCACCTGTCTC
TACTCGTCTCGTCTTGAGGATGTCTGTGTCATCTACTCCATCCTACCGCA
CATCTTGTTGTAAACACCAACCAGTTGGCTGCTTCCTTGGAGCAAGAGAG
GGTTGCAGCCAGGGCGGAATTGGAGGAAGAATTGGTCAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15046:477..3017+

>mRNA_Ecto-sp13_S_contig15046.3815.1 ID=mRNA_Ecto-sp13_S_contig15046.3815.1|Name=mRNA_Ecto-sp13_S_contig15046.3815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15046:477..3017+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCTCGCCACGGAGGCCGAGGCTCGCATCCACGCCGCTCGCGAAACTGC
CCTTGCCGCGGAAACAAGTCTAGAGGCGACGCGGGAAGAAGCGCGCGACC
TCCGCAAGAACCACGAGAATGCCATGATCGCGCTTGCCGCCGAAATGGGC
GAGAAACAGCGGCGAGGCAAGGAAGGCGTAGCGGTCAGGCTACAGGAAAA
GAAGGCTAAGCGGCTGGCAGAGTTGAAGAAAGCCAAGGCGAAGGGTGATG
AGGTGCAGGACGAGCTCGCCCGACTGGAGCAAGAAGCGGAGAGAGAGCAG
AAACAGGTTGAGGCGGATATCGAGCAAGAGGCCGCGATTCTTGAACAGGC
TGAAGCGAAGATGCTCGCCAAGCGAGAAGCCGAGGCTCGCGCCACCCGAC
TGACGGCTGAAAGTTCTAGGAGAGCAGGCGAACTAGAGCTCCAGAAGATA
CGTCAGGGGCATGAAGAAAACCAGAGGATTCTAGAAGAAGCTCAGGAGAA
CAAGCGGAAGCTTCGTCAGCGCGTGTTGGCGGAGAGGCTGGAGCGCCGAC
GCCAGGAGAAGATGAACGCCGCCATCGCTGCTTTAGAAAGCGCCGAAGCT
CAGCAGAAGTTGGCTGCTTCCTTGGAGCAAGAGAGGGTTGCAGCCAGGGC
GGAATTGGAGGAAGAATTGGTCAAG
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