mRNA_Ecto-sp13_S_contig15044.3812.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15044.3812.1
Unique NamemRNA_Ecto-sp13_S_contig15044.3812.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15044.3812.1 vs. uniprot
Match: A0A6H5JZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE)

HSP 1 Score: 392 bits (1008), Expect = 1.020e-122
Identity = 260/351 (74.07%), Postives = 264/351 (75.21%), Query Frame = 1 
Query:    1 SKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSRSEALSPPASPVPSXXXXPTAERGQAAAVTSKTDAXXXXXXXXXXXXXGASSLLADLDDFMGGLSLPGGEARIPGMSHIKGVFRAELQAQGMLGGSGDGGDAGGDAEGSGNSGEPSPPGEGLFLNMLRRLENVDVTGEDSPRAAAXXXXXXXXXXAANGFNRDESRGGGGDGAEVTAQGTYHQEVATPGGGGVGSSFAGVGAKLRSKFRKPGRGFGLPQGVSGRGGGGGG---DQTVGGATEGVGEGGKAFVEGASKALAVNRERMMGWMKELRPKDWSPKEAER 1044
            +KVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSRSEALSPPASP   XXXX TAERGQA+A TSKTDAXXXXXXXXXXXXXGASSLLADLDDFMGGLSLPGGEARIPGMSHIKGVFRAELQAQGMLGGSGDG              + SPPGEGLFLNMLRRLENVDV GEDSPR AA XXXXXXXX                  A+  A G                                  GFGLPQGV GRG        DQTVGGATEGVGEGGKAFVEGASKALAVNRERMMGWMKELRPKDWSPKEAER
Sbjct:   76 AKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSRSEALSPPASPAXXXXXXXTAERGQASAATSKTDAXXXXXXXXXXXXXGASSLLADLDDFMGGLSLPGGEARIPGMSHIKGVFRAELQAQGMLGGSGDGXXXXXXXXXXXXXXDSSPPGEGLFLNMLRRLENVDVAGEDSPRVAAAXXXXXXXX------------------ADGVANG----------------------------------GFGLPQGVGGRGXXXXXXXXDQTVGGATEGVGEGGKAFVEGASKALAVNRERMMGWMKELRPKDWSPKEAER 374
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BLAST of mRNA_Ecto-sp13_S_contig15044.3812.1 vs. uniprot
Match: D7FQI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI4_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 5.290e-75
Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 1 
Query:    1 SKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSRSEALSPPASPVPSXXXXPTAERGQAAAVTSKTDAXXXXXXXXXXXXXGASSLLADLDDFMGGLSLPGGEARIPGMSHIKG 441
            +KVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSRSEALSPPASP P XXXX TAERGQAAAVTSKTDAXXXXXXXXXXXXXGASSLLADLDDFMGGLSLPGGEARIPGMSHIKG
Sbjct:   76 AKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSRSEALSPPASPAPXXXXXXTAERGQAAAVTSKTDAXXXXXXXXXXXXXGASSLLADLDDFMGGLSLPGGEARIPGMSHIKG 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15044.3812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZQ7_9PHAE1.020e-12274.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQI4_ECTSI5.290e-7597.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15044contigEcto-sp13_S_contig15044:155..2496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1048
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_008780.1
Cds size1047
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.3979337-CDS-Ecto-sp13_S_contig15044:155..7641681462801.3979337-CDS-Ecto-sp13_S_contig15044:155..764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15044 156..764 -
1681462801.4084606-CDS-Ecto-sp13_S_contig15044:1213..14511681462801.4084606-CDS-Ecto-sp13_S_contig15044:1213..1451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15044 1214..1451 -
1681462801.4178908-CDS-Ecto-sp13_S_contig15044:1837..19711681462801.4178908-CDS-Ecto-sp13_S_contig15044:1837..1971Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15044 1838..1971 -
1681462801.431674-CDS-Ecto-sp13_S_contig15044:2430..24961681462801.431674-CDS-Ecto-sp13_S_contig15044:2430..2496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15044 2431..2496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15044.3812.1prot_Ecto-sp13_S_contig15044.3812.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15044 156..2496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15044.3812.1

>prot_Ecto-sp13_S_contig15044.3812.1 ID=prot_Ecto-sp13_S_contig15044.3812.1|Name=mRNA_Ecto-sp13_S_contig15044.3812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=349bp
SKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACR
GPDRGGLPRPLVMKFSRSEALSPPASPVPSPPASPTAERGQAAAVTSKTD
AAGGGASGGGGATSGASSLLADLDDFMGGLSLPGGEARIPGMSHIKGVFR
AELQAQGMLGGSGDGGDAGGDAEGSGNSGEPSPPGEGLFLNMLRRLENVD
VTGEDSPRAAAAAAAATAADGAANGFNRDESRGGGGDGAEVTAQGTYHQE
VATPGGGGVGSSFAGVGAKLRSKFRKPGRGFGLPQGVSGRGGGGGGDQTV
GGATEGVGEGGKAFVEGASKALAVNRERMMGWMKELRPKDWSPKEAERT
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mRNA from alignment at Ecto-sp13_S_contig15044:155..2496-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15044.3812.1 ID=mRNA_Ecto-sp13_S_contig15044.3812.1|Name=mRNA_Ecto-sp13_S_contig15044.3812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15044:155..2496- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAAGGTAACGGGCTTTGTCCCGCGAGAGGACGGCGGACTCAGCGCCCT
CGAAATGCACGGCCAGGTGAGCACGAGCATTACTACATGGGACTTTCATT
GGTACGCTACACGGGTATTGTCTTGCTGAAAACGACTCCGTTTTCAAGCT
TCATCCCCGTGCCATTGCCCCCGCGATCTGCCGCCGTTGCTGCGACTGTC
CTGTCCGCGCCAAACGCGGGGCACATCCGTGAGGAGTCTTGGGACTTTTG
GCGTTGGGACATGCATCGCGGGGCGCGTGTAGCTGTTTTACCTGCAATGA
TTGAGGATTGAGTGGAGAAGGGCGTGCTGTTGGTGTCTGTACCGTTCCAT
TTCTCGACTGCTGTGCTCTTTTCCCTGGTACAGCACGAGTTGTGATCGTA
GGCAGCGATTACTAAAGATGGCGCCGAGGTTTTGCCGGAGCAGCAATCCC
CCATCACAAACGTGTCCGGCTTGTTCAAAACGAGCATGCCCACCCTTCCT
CTCGGTCGCTCTCGTCCAATCGAAGCTCTTGGAGGGCGACGTCCTGACGC
ACCTTAACGGGAGCAACGCCCGCCTCCTGGACTTCACCGACATCCTCAAG
GCGTGCAGGGGTCCCGATAGGGGAGGGCTCCCTCGCCCTCTCGTCATGAA
GTTTTCGAGGTCAGAGGGGCGGACGTGTCGTGAGGGTCGCTATTTGCGCG
GTGCATGGTGTGCGTTTTGTGTGTGTGTGTATGTGTCTTGCCGATTGCAG
CGGCAGTGTTGGGAGAAGCCGCTGCCGCAGTCGAGTGGCGTCATTTTCGG
GGCATGGCCGGGATACCGGGGTGTAGGGGCAGGTGGAAGCCTGAAGAGGT
CTCTTGGTTGGTGTGTTCCTTTTCGTGTTTCCCGTCACACTCCTGTGTCG
TCCAAAAAGGCTGTTGATTTCCCAACACGGGCTGGCCTTCCTCGACACAG
CAGTTCTATATCCCGCTCTGCCTGCCCCCTTCGTGCTGTCTTTGCTTGCC
CCTGCGTTTGTGAATTTTTACGCATCCCCTGCCTGTCGAGATAAGGTCGG
AGGCGCTCTCGCCCCCCGCTTCTCCCGTGCCGTCCCCGCCCGCCTCGCCG
ACCGCTGAGCGAGGGCAAGCTGCCGCGGTAACCAGTAAGACTGATGCAGC
AGGGGGCGGCGCTAGCGGCGGTGGCGGCGCTACAAGCGGAGCATCTTCGT
TGCTGGCCGACCTTGATGACTTTATGGGGGGGTTAAGCTTGCCGGGGGGG
GAAGCGCGAATTCCCGGGATGTCGCACATCAAGGTGTGTGTGTAGTCCTG
CGGTTTTGTGGCCGCTCGCTCCGTGTAACGTTGTTGTGGCTGTACGCTTG
TCGACCGTACTTGTGTAGCGCGGCACGCGTCTCGTCTGATGTTGAGCCAG
ACCCCCCGTTGCCGTTATTAGTCCTGCAAGGATTCCCGGTGTCTCAAGTT
GGACACGGTGCAACGATGCACGAAGCACATGTGTACAGTGAACAACCTCG
TGACGGTAGATGCTCCGTTTGAGGTTCACCGTCAGACCGTTTCAAAACTT
ATTTGAACGCGTGATTTTTTCACATCTGTTCATTGTTTTAGCTTCCGTTT
TGATCCTTAATCCGCGCTTGACGGGATGATATACACCGCGCTAAGGAGAT
GTTTGCGCAGCGTGGCGGTATTGTTGTTGCTGCTGCAACTGCCGCTGATG
CCGTCTCCGGAACTTGCGGCTACGTCAACCAGGGAGTCTTTAGGGCCGAG
CTCCAGGCCCAAGGCATGCTCGGCGGGAGCGGCGACGGCGGAGACGCCGG
GGGCGACGCAGAAGGAAGCGGGAATAGCGGGGAACCCTCCCCGCCAGGCG
AGGGTCTTTTCCTAAACATGTTGAGAAGGTTGGAGAACGTCGATGTGACG
GGAGAGGACAGCCCCAGGGCGGCGGCGGCGGCGGCGGCGGCGACGGCAGC
GGATGGTGCCGCAAACGGGTTCAACCGAGACGAGAGCAGGGGCGGGGGTG
GAGATGGCGCAGAAGTTACCGCTCAAGGTACATATCATCAAGAAGTGGCG
ACGCCCGGGGGCGGGGGGGTCGGTTCCTCATTCGCCGGCGTGGGCGCTAA
GCTTCGCTCCAAGTTTAGGAAACCCGGCAGGGGCTTCGGGCTTCCGCAAG
GAGTCAGTGGTCGCGGTGGCGGCGGTGGCGGAGATCAGACGGTGGGAGGG
GCAACGGAGGGCGTGGGAGAGGGCGGCAAGGCGTTCGTGGAAGGTGCTTC
GAAGGCTCTGGCGGTGAATCGGGAGAGAATGATGGGCTGGATGAAGGAGC
TGAGGCCCAAGGACTGGTCTCCCAAGGAGGCGGAACGAACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15044:155..2496-

>mRNA_Ecto-sp13_S_contig15044.3812.1 ID=mRNA_Ecto-sp13_S_contig15044.3812.1|Name=mRNA_Ecto-sp13_S_contig15044.3812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1047bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15044:155..2496- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAAGGTAACGGGCTTTGTCCCGCGAGAGGACGGCGGACTCAGCGCCCT
CGAAATGCACGGCCAGCTCTTGGAGGGCGACGTCCTGACGCACCTTAACG
GGAGCAACGCCCGCCTCCTGGACTTCACCGACATCCTCAAGGCGTGCAGG
GGTCCCGATAGGGGAGGGCTCCCTCGCCCTCTCGTCATGAAGTTTTCGAG
GTCGGAGGCGCTCTCGCCCCCCGCTTCTCCCGTGCCGTCCCCGCCCGCCT
CGCCGACCGCTGAGCGAGGGCAAGCTGCCGCGGTAACCAGTAAGACTGAT
GCAGCAGGGGGCGGCGCTAGCGGCGGTGGCGGCGCTACAAGCGGAGCATC
TTCGTTGCTGGCCGACCTTGATGACTTTATGGGGGGGTTAAGCTTGCCGG
GGGGGGAAGCGCGAATTCCCGGGATGTCGCACATCAAGGGAGTCTTTAGG
GCCGAGCTCCAGGCCCAAGGCATGCTCGGCGGGAGCGGCGACGGCGGAGA
CGCCGGGGGCGACGCAGAAGGAAGCGGGAATAGCGGGGAACCCTCCCCGC
CAGGCGAGGGTCTTTTCCTAAACATGTTGAGAAGGTTGGAGAACGTCGAT
GTGACGGGAGAGGACAGCCCCAGGGCGGCGGCGGCGGCGGCGGCGGCGAC
GGCAGCGGATGGTGCCGCAAACGGGTTCAACCGAGACGAGAGCAGGGGCG
GGGGTGGAGATGGCGCAGAAGTTACCGCTCAAGGTACATATCATCAAGAA
GTGGCGACGCCCGGGGGCGGGGGGGTCGGTTCCTCATTCGCCGGCGTGGG
CGCTAAGCTTCGCTCCAAGTTTAGGAAACCCGGCAGGGGCTTCGGGCTTC
CGCAAGGAGTCAGTGGTCGCGGTGGCGGCGGTGGCGGAGATCAGACGGTG
GGAGGGGCAACGGAGGGCGTGGGAGAGGGCGGCAAGGCGTTCGTGGAAGG
TGCTTCGAAGGCTCTGGCGGTGAATCGGGAGAGAATGATGGGCTGGATGA
AGGAGCTGAGGCCCAAGGACTGGTCTCCCAAGGAGGCGGAACGAACA
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