prot_Ecto-sp13_S_contig1504.3810.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1504.3810.1
Unique Nameprot_Ecto-sp13_S_contig1504.3810.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length229
Homology
BLAST of mRNA_Ecto-sp13_S_contig1504.3810.1 vs. uniprot
Match: A0A6H5JFN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN1_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 8.020e-75
Identity = 133/260 (51.15%), Postives = 166/260 (63.85%), Query Frame = 0
Query:    1 MASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFFIQRSHARFLKVYGTVSNNRPSDIEHQRFQEGLGCLAYPRSYAVQLGSYERGPPPVQLVSATGWSFSKVAGKSGLIGFGKSSSNPAVATFLLPCSGERRVLDVEYLVSYEGMGAARVG---------------------------GSHASVSLFETIPLPDTGGTTSEGMVRVTFKILSAQEEISYASSRRLYKSG-----RHLRGDRKFKLISLQCC 228
            M SFR AVWP  +  + A  IWG  VHPDW+V QLMAD+V +++Q S+ARFL+VYG   N  PS+ E QRF+ G+GCLA PRS  ++LG+Y   P P +LVS TGWS  K++G++GL GF K +++PAVATF L C G   +LD+EYLVSY GMG+  V                             SHASVS FETIP+PD GG    G VRV+F+ILSA+EE S +SSR     G     + +RGDRKFKLISLQCC
Sbjct:  100 MVSFRDAVWPHKEDYAAAEDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSPNPSPSERELQRFKGGMGCLANPRSSILELGNYLDAPTPEELVSVTGWSVLKLSGEAGLTGFRKGATDPAVATFELVCDGGAGLLDMEYLVSYVGMGSVMVEIEAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGG---GNVRVSFRILSAEEERSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 356          
BLAST of mRNA_Ecto-sp13_S_contig1504.3810.1 vs. uniprot
Match: D8LJK3_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK3_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 1.050e-74
Identity = 135/260 (51.92%), Postives = 167/260 (64.23%), Query Frame = 0
Query:    1 MASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFFIQRSHARFLKVYGTVSNNRPSDIEHQRFQEGLGCLAYPRSYAVQLGSYERGPPPVQLVSATGWSFSKVAGKSGLIGFGKSSSNPAVATFLLPCSGERRVLDVEYLVSYEGMGAARVG---------------------------GSHASVSLFETIPLPDTGGTTSEGMVRVTFKILSAQEEISYASSRRLYKSG-----RHLRGDRKFKLISLQCC 228
            M SFR AVWP  +  + A  IWG  VHPDW+V QLMAD+V +++Q S+ARFL+VYG + N  PS+ E QRF+ G+GCLA PRS  ++LGSY   PPP +LVS TGWS  K++G++GL GF K +++PAVATF L C G   +LD+EYLVSY GMGA  V                             SHASVS FETIP+PD GG    G VRV+ +ILSA+EE S +SSR     G     + +RGDRKFKLISLQCC
Sbjct:  250 MVSFRDAVWPKKEDYAAAEDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNPSPSEKELQRFKGGMGCLANPRSSVLELGSYLDAPPPEELVSVTGWSVLKLSGEAGLTGFRKYATDPAVATFELVCDGGVGLLDIEYLVSYAGMGAVMVEIEAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGG---GNVRVSLRILSAEEEHSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 506          
BLAST of mRNA_Ecto-sp13_S_contig1504.3810.1 vs. uniprot
Match: A0A6H5JTT5_9PHAE (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT5_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 2.880e-66
Identity = 129/260 (49.62%), Postives = 160/260 (61.54%), Query Frame = 0
Query:    1 MASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFFIQRSHARFLKVYGTVSNNRPSDIEHQRFQEGLGCLAYPRSYAVQLGSYERGPPPVQLVSATGWSFSKVAGKSGLIGFGKSSSNPAVATFLLPCSGERRVLDVEYLVSYEGMGAARVG---------------------------GSHASVSLFETIPLPDTGGTTSEGMVRVTFKILSAQEEISYASSRRLYKSG-----RHLRGDRKFKLISLQCC 228
            M SFR AVWP  +  + A  IWG  VHPDW+V QLMAD+V +++Q S+ARFL+VYG  SN  PS+ E QRF+ G+GCLA PRS  +QL  Y   PPP +LVS +G   S V+G +G  GF K +++PAVATF L C G   +LD+EYLVSYEGMG+A V                             SHASV  FETIP+PD GG      VRV+ +I+SA+ E S +SSR     G     + +RGDRKFKLISLQCC
Sbjct:  278 MVSFRDAVWPQKEDYAAAEVIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSSNPSPSERELQRFKSGMGCLANPRSAILQLDKYLDAPPPEELVSVSG---SSVSGDAGPTGFRKDATDPAVATFDLVCDGGVGLLDMEYLVSYEGMGSAMVEIEAGPTAEDVQDEGNSSTSTVIVDGLWDSHASVPSFETIPIPDAGGGRH---VRVSIRIMSAEGERSSSSSRLFDFKGDLDREKEVRGDRKFKLISLQCC 531          
BLAST of mRNA_Ecto-sp13_S_contig1504.3810.1 vs. uniprot
Match: D7FNS9_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS9_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 5.100e-56
Identity = 110/239 (46.03%), Postives = 141/239 (59.00%), Query Frame = 0
Query:   32 VQQLMADLVVFFIQRSHARFLKVYGTVS-----------NNRPSDIEHQRFQEGLGCLAYPRSYAVQLGSYERGPPPVQLVSATGWSFSKVAGKSGLIGFGKSSSNPAVATFLLPCSGERRVLDVEYLVSYEGMGAARVG-------------------------GSHASVSLFETIPLPDTGGTTSEGMVRVTFKILSAQEEISYASSRRLY------KSGRHLRGDRKFKLISLQCC 228
            VQQLMAD+VV+++Q+SHARFL+  G ++           N    + E +RF+ GLGCL    ++ ++LG Y   PPP +LVS  GWS  ++AG  GL GFG SSSNPAVA F LPC GE+++LDVEYLVSYEGMGA +V                          GSH S+  FETI +PD G +  E MVRVT +ILS + E  Y     L+      +    +RGDRKFKL+SLQCC
Sbjct:  162 VQQLMADVVVYYMQKSHARFLEANGEIACGDEVVKDPLPNPSVDERELERFKNGLGCLESTNAFELELGGYLGTPPPSELVSTNGWSILQLAGAPGLTGFGNSSSNPAVAVFDLPCVGEKQILDVEYLVSYEGMGAVKVSVGQVDAHGSSAANNSTSVVVVDGLWGSHVSIPAFETIDIPDKGTSAPESMVRVTLEILSVEGERLYTPH--LFAGVGNDEKQTSVRGDRKFKLLSLQCC 398          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1504.3810.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JFN1_9PHAE8.020e-7551.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJK3_ECTSI1.050e-7451.92SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JTT5_9PHAE2.880e-6649.62SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
D7FNS9_ECTSI5.100e-5646.03SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1504contigEcto-sp13_S_contig1504:1406..3375 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1504.3810.1mRNA_Ecto-sp13_S_contig1504.3810.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1504 1363..3392 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1504.3810.1 ID=prot_Ecto-sp13_S_contig1504.3810.1|Name=mRNA_Ecto-sp13_S_contig1504.3810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
MASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFFIQRSHAR
FLKVYGTVSNNRPSDIEHQRFQEGLGCLAYPRSYAVQLGSYERGPPPVQL
VSATGWSFSKVAGKSGLIGFGKSSSNPAVATFLLPCSGERRVLDVEYLVS
YEGMGAARVGGSHASVSLFETIPLPDTGGTTSEGMVRVTFKILSAQEEIS
YASSRRLYKSGRHLRGDRKFKLISLQCC*
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