mRNA_Ecto-sp13_S_contig1504.3810.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1504.3810.1
Unique NamemRNA_Ecto-sp13_S_contig1504.3810.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1504.3810.1 vs. uniprot
Match: A0A6H5JFN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN1_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 5.020e-84
Identity = 145/274 (52.92%), Postives = 179/274 (65.33%), Query Frame = 2 
Query:    2 AEVHASVTQKYGIPMASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFFIQRSHARFLKVYGTVSNNRPSDIEHQRFQEGLGCLAYPRSYAVQLGSYERGPPPVQLVSATGWSFSKVAGKSGLIGFGKSSSNPAVATFLLPCSGERRVLDVEYLVSYEGMGAARVG---------------------------GSHASVSLFETIPLPDTGGTTSEGMVRVTFKILSAQEEISYASSRRLYKSG-----RHLRGDRKFKLISLQCC 727
            AEVHASVTQK+ IPM SFR AVWP  +  + A  IWG  VHPDW+V QLMAD+V +++Q S+ARFL+VYG   N  PS+ E QRF+ G+GCLA PRS  ++LG+Y   P P +LVS TGWS  K++G++GL GF K +++PAVATF L C G   +LD+EYLVSY GMG+  V                             SHASVS FETIP+PD GG    G VRV+F+ILSA+EE S +SSR     G     + +RGDRKFKLISLQCC
Sbjct:   86 AEVHASVTQKHDIPMVSFRDAVWPHKEDYAAAEDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSPNPSPSERELQRFKGGMGCLANPRSSILELGNYLDAPTPEELVSVTGWSVLKLSGEAGLTGFRKGATDPAVATFELVCDGGAGLLDMEYLVSYVGMGSVMVEIEAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGG---GNVRVSFRILSAEEERSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 356
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BLAST of mRNA_Ecto-sp13_S_contig1504.3810.1 vs. uniprot
Match: D8LJK3_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK3_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 7.990e-84
Identity = 147/274 (53.65%), Postives = 180/274 (65.69%), Query Frame = 2 
Query:    2 AEVHASVTQKYGIPMASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFFIQRSHARFLKVYGTVSNNRPSDIEHQRFQEGLGCLAYPRSYAVQLGSYERGPPPVQLVSATGWSFSKVAGKSGLIGFGKSSSNPAVATFLLPCSGERRVLDVEYLVSYEGMGAARVG---------------------------GSHASVSLFETIPLPDTGGTTSEGMVRVTFKILSAQEEISYASSRRLYKSG-----RHLRGDRKFKLISLQCC 727
            AEVHASVTQK+ IPM SFR AVWP  +  + A  IWG  VHPDW+V QLMAD+V +++Q S+ARFL+VYG + N  PS+ E QRF+ G+GCLA PRS  ++LGSY   PPP +LVS TGWS  K++G++GL GF K +++PAVATF L C G   +LD+EYLVSY GMGA  V                             SHASVS FETIP+PD GG    G VRV+ +ILSA+EE S +SSR     G     + +RGDRKFKLISLQCC
Sbjct:  236 AEVHASVTQKHDIPMVSFRDAVWPKKEDYAAAEDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNPSPSEKELQRFKGGMGCLANPRSSVLELGSYLDAPPPEELVSVTGWSVLKLSGEAGLTGFRKYATDPAVATFELVCDGGVGLLDIEYLVSYAGMGAVMVEIEAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGG---GNVRVSLRILSAEEEHSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 506
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BLAST of mRNA_Ecto-sp13_S_contig1504.3810.1 vs. uniprot
Match: A0A6H5JTT5_9PHAE (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT5_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 3.870e-74
Identity = 139/274 (50.73%), Postives = 172/274 (62.77%), Query Frame = 2 
Query:    2 AEVHASVTQKYGIPMASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFFIQRSHARFLKVYGTVSNNRPSDIEHQRFQEGLGCLAYPRSYAVQLGSYERGPPPVQLVSATGWSFSKVAGKSGLIGFGKSSSNPAVATFLLPCSGERRVLDVEYLVSYEGMGAARVG---------------------------GSHASVSLFETIPLPDTGGTTSEGMVRVTFKILSAQEEISYASSRRLYKSG-----RHLRGDRKFKLISLQCC 727
            AE HASVT+K+ IPM SFR AVWP  +  + A  IWG  VHPDW+V QLMAD+V +++Q S+ARFL+VYG  SN  PS+ E QRF+ G+GCLA PRS  +QL  Y   PPP +LVS +G   S V+G +G  GF K +++PAVATF L C G   +LD+EYLVSYEGMG+A V                             SHASV  FETIP+PD GG      VRV+ +I+SA+ E S +SSR     G     + +RGDRKFKLISLQCC
Sbjct:  264 AEAHASVTRKHDIPMVSFRDAVWPQKEDYAAAEVIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSSNPSPSERELQRFKSGMGCLANPRSAILQLDKYLDAPPPEELVSVSG---SSVSGDAGPTGFRKDATDPAVATFDLVCDGGVGLLDMEYLVSYEGMGSAMVEIEAGPTAEDVQDEGNSSTSTVIVDGLWDSHASVPSFETIPIPDAGGGRH---VRVSIRIMSAEGERSSSSSRLFDFKGDLDREKEVRGDRKFKLISLQCC 531
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BLAST of mRNA_Ecto-sp13_S_contig1504.3810.1 vs. uniprot
Match: D7FNS9_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS9_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 2.600e-59
Identity = 122/284 (42.96%), Postives = 155/284 (54.58%), Query Frame = 2 
Query:    2 AEVHASVTQKYGIPMASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFFIQRSHARFLKVYGTVS-----------NNRPSDIEHQRFQEGLGCLAYPRSYAVQLGSYERGPPPVQLVSATGWSFSKVAGKSGLIGFGKSSSNPAVATFLLPCSGERRVLDVEYLVSYEGMGAARVG-------------------------GSHASVSLFETIPLPDTGGTTSEGMVRVTFKILSAQEEISYASSRRLY------KSGRHLRGDRKFKLISLQCC 727
            AEVHA+VTQK+ IPM                              VQQLMAD+VV+++Q+SHARFL+  G ++           N    + E +RF+ GLGCL    ++ ++LG Y   PPP +LVS  GWS  ++AG  GL GFG SSSNPAVA F LPC GE+++LDVEYLVSYEGMGA +V                          GSH S+  FETI +PD G +  E MVRVT +ILS + E  Y     L+      +    +RGDRKFKL+SLQCC
Sbjct:  147 AEVHANVTQKHDIPM------------------------------VQQLMADVVVYYMQKSHARFLEANGEIACGDEVVKDPLPNPSVDERELERFKNGLGCLESTNAFELELGGYLGTPPPSELVSTNGWSILQLAGAPGLTGFGNSSSNPAVAVFDLPCVGEKQILDVEYLVSYEGMGAVKVSVGQVDAHGSSAANNSTSVVVVDGLWGSHVSIPAFETIDIPDKGTSAPESMVRVTLEILSVEGERLYTPH--LFAGVGNDEKQTSVRGDRKFKLLSLQCC 398
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1504.3810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JFN1_9PHAE5.020e-8452.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJK3_ECTSI7.990e-8453.65SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JTT5_9PHAE3.870e-7450.73SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
D7FNS9_ECTSI2.600e-5942.96SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1504contigEcto-sp13_S_contig1504:1363..3392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size747
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionSGNH hydrolase-type esterase domain
Ec32 orthologEc-12_003540.1
Cds size687
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1504.3810.1prot_Ecto-sp13_S_contig1504.3810.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1504 1406..3375 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.1360312-UTR-Ecto-sp13_S_contig1504:1362..14051681462801.1360312-UTR-Ecto-sp13_S_contig1504:1362..1405Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1504 1363..1405 +
1681462801.189586-UTR-Ecto-sp13_S_contig1504:3375..33921681462801.189586-UTR-Ecto-sp13_S_contig1504:3375..3392Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1504 3376..3392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.1473782-CDS-Ecto-sp13_S_contig1504:1405..14081681462801.1473782-CDS-Ecto-sp13_S_contig1504:1405..1408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1504 1406..1408 +
1681462801.1578653-CDS-Ecto-sp13_S_contig1504:1770..19261681462801.1578653-CDS-Ecto-sp13_S_contig1504:1770..1926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1504 1771..1926 +
1681462801.1692185-CDS-Ecto-sp13_S_contig1504:2766..30851681462801.1692185-CDS-Ecto-sp13_S_contig1504:2766..3085Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1504 2767..3085 +
1681462801.1796606-CDS-Ecto-sp13_S_contig1504:3166..33751681462801.1796606-CDS-Ecto-sp13_S_contig1504:3166..3375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1504 3167..3375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1504.3810.1

>prot_Ecto-sp13_S_contig1504.3810.1 ID=prot_Ecto-sp13_S_contig1504.3810.1|Name=mRNA_Ecto-sp13_S_contig1504.3810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
MASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFFIQRSHAR
FLKVYGTVSNNRPSDIEHQRFQEGLGCLAYPRSYAVQLGSYERGPPPVQL
VSATGWSFSKVAGKSGLIGFGKSSSNPAVATFLLPCSGERRVLDVEYLVS
YEGMGAARVGGSHASVSLFETIPLPDTGGTTSEGMVRVTFKILSAQEEIS
YASSRRLYKSGRHLRGDRKFKLISLQCC*
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mRNA from alignment at Ecto-sp13_S_contig1504:1363..3392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1504.3810.1 ID=mRNA_Ecto-sp13_S_contig1504.3810.1|Name=mRNA_Ecto-sp13_S_contig1504.3810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2030bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1504:1363..3392+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGAGGTTCATGCCAGTGTCACGCAAAAGTATGGCATCCCCATGGTGA
GTTTGTTGTTGGTGTGGTTTTGCGAGTGGTAATTGATTTCGGGGCGTTGG
TGTGGGCGAGAATTCAGACGTCAAACAGTGAAGAGATCTATGCGTGAAGG
TGTCGTTCGAATTAGAAACAAACACCCGAAACCATACGCAAACCCTGAAC
TTTGTTAGATTTCTTGGCTCGGCTCTACGCTTTACCTCAGTGGGCGAAAG
AAGCTAAATCGTTTCAAGCGGGAGAATTGATGCACACAGGTGTTTTAGTG
CAATCAAGCGATGCGTTGAAAACACTCGGGGCGAAAATTCGGGCGAATCG
GGGCGAGGTTCATGACATCCTCGGTTTGGTTGTCACACCTTGTTGACATC
GTTACCAGGCATCTTTTCGGCATGCGGTTTGGCCGGACATCAAACAAGCC
TCCTTGGCAACTCGCATATGGGGGCGAAAGGTTCATCCTGATTGGCGAGT
GCAACAGCTCATGGCCGATCTCGTGGTGTTCTTCATCCAAAGATCGCACG
CCCGATTCTTGAAGGTGGGCGACACAACGACCATGAAGATGATGTGTGTT
GTTGTGTGTTTTTTTGACCTACTATGTTGGCGACAGTCCGCCCTTCTTTT
GTGGTGAGACGTGGACTGCACTTTTCGGTGCATGTAGAGTAACACTTTTC
AGTGTATTTTGCCGTTCAACTACAACCATCGAGGGTCACACAGCAGGAGG
GAGTAAACACCAGGGCTCTTTGTCTTCTTTGACGTATTTTCGTGCCCCAT
CTTCCTTGCTCCTGCGGTGCGTGCCAATGCTGAAATTTTGTTTTTGTCGC
GAGAAAGGTCCAGCCGTCCCTTTCCCTGATCAACGGTGCTAACGTCGAAG
TTTGGTGCTCACGAGAGCTATTCTGGCTATATTTTGCTTTCACGCGAAAA
AAATTGAAACTGTTTTCTCCCCATGAGGATTCATCCTCACGACCCCTGCG
AGTAGTACATTCGACTAGACCACCAGGGCGATCGAGTGTGTTTGCTTGTT
CCTAAGCGTAAACACAGGTCGGCGTTGGCGTGTGATTCGCGTCCACGTTG
CTCTTTGTTTGGCGCCTGGACATCCGTTCAACACAGTCTTGCCTACGATG
ATGTTCTAAATCCTACATCAGTTCAAATCCTACAGGCCGTAATCGGCTCT
AGAGAATGACCAGACTGTTAGATGAAGGTGTATCCAGATGAAGGCTTATC
CACTATGCTCCTCAATCAGCCGCTGACTGAGGAGCACAGTGGATAAGCCT
TCATGCAACACAGACCCCATCGAAGTATTCGCTCGGTGACAGACTTGGCA
TTAAACGCTTGGTGCTGACCTAACGCCCGCGCAACATCGACCTAAAAACC
ACAGGTTTACGGCACGGTGTCCAACAACAGACCCAGTGACATTGAACACC
AGCGTTTCCAGGAAGGGCTGGGATGCCTCGCGTACCCTCGGTCCTACGCA
GTACAACTAGGCTCGTACGAGAGGGGGCCTCCTCCCGTTCAACTGGTGTC
AGCTACAGGATGGTCGTTCTCGAAAGTTGCGGGGAAATCTGGACTGATCG
GATTTGGCAAGTCTTCTTCCAATCCAGCGGTTGCCACATTCCTCCTCCCT
TGTTCTGGTGAACGTCGAGTGCTCGATGTGGAATACCTTGTTAGTTACGA
AGGCATGGGGGCAGCCAGGGTGGCTGTTGACGCGAGATCTGAAGCGGGAG
AAGCAAGCGCAACAGCAAATAACAGTACCTCGGCCGTTATTGTTGACGGT
TTGTGGGGCTCGCACGCCTCGGTTTCTCTGTTCGAGACTATTCCTCTTCC
CGACACGGGTGGCACAACGTCGGAAGGAATGGTTAGGGTGACCTTTAAGA
TATTGTCGGCACAAGAGGAGATTTCGTACGCTTCTTCCCGCCGCCTCTAC
AAGTCTGGGCGTCACCTGCGGGGTGACCGTAAATTTAAGCTGATCAGCCT
GCAGTGTTGTTAACCGTATATGATCGTGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1504:1363..3392+

>mRNA_Ecto-sp13_S_contig1504.3810.1 ID=mRNA_Ecto-sp13_S_contig1504.3810.1|Name=mRNA_Ecto-sp13_S_contig1504.3810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1504:1363..3392+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATCTTTTCGGCATGCGGTTTGGCCGGACATCAAACAAGCCTCCTT
GGCAACTCGCATATGGGGGCGAAAGGTTCATCCTGATTGGCGAGTGCAAC
AGCTCATGGCCGATCTCGTGGTGTTCTTCATCCAAAGATCGCACGCCCGA
TTCTTGAAGGTTTACGGCACGGTGTCCAACAACAGACCCAGTGACATTGA
ACACCAGCGTTTCCAGGAAGGGCTGGGATGCCTCGCGTACCCTCGGTCCT
ACGCAGTACAACTAGGCTCGTACGAGAGGGGGCCTCCTCCCGTTCAACTG
GTGTCAGCTACAGGATGGTCGTTCTCGAAAGTTGCGGGGAAATCTGGACT
GATCGGATTTGGCAAGTCTTCTTCCAATCCAGCGGTTGCCACATTCCTCC
TCCCTTGTTCTGGTGAACGTCGAGTGCTCGATGTGGAATACCTTGTTAGT
TACGAAGGCATGGGGGCAGCCAGGGTGGGGGGCTCGCACGCCTCGGTTTC
TCTGTTCGAGACTATTCCTCTTCCCGACACGGGTGGCACAACGTCGGAAG
GAATGGTTAGGGTGACCTTTAAGATATTGTCGGCACAAGAGGAGATTTCG
TACGCTTCTTCCCGCCGCCTCTACAAGTCTGGGCGTCACCTGCGGGGTGA
CCGTAAATTTAAGCTGATCAGCCTGCAGTGTTGTTAA
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