mRNA_Ecto-sp13_S_contig15039.3809.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15039.3809.1
Unique NamemRNA_Ecto-sp13_S_contig15039.3809.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15039.3809.1 vs. uniprot
Match: A0A6H5KWQ1_9PHAE (Polynucleotide adenylyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ1_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.300e-39
Identity = 106/144 (73.61%), Postives = 110/144 (76.39%), Query Frame = 2 
Query:   14 AGGRTSIPRSTPHGAPAPPGARMTTIPADGNGXXXXXXXXXXXXXXAPNRSSNAQRPATARVIPPGDATAAGDMTADVAVSKGRGGGGDVAGTVGAAKLRRARPQGVGGRVAAAAAXXXXXXXXAGTAAVARVKEAAVHSRGVA 445
            AGGR+SIP STPH APAP GARMT IP DG+    XXXXXXXXX   P RSSNA    TARVIPPG ATAAGDM  DVAV KG GGGGDVAGTVGAA+LRRARP+GVG RV AAAA        AG A VARVKEAAVHSRGVA
Sbjct:  646 AGGRSSIPSSTPHSAPAPTGARMTIIPGDGDDNAAXXXXXXXXXSPVPKRSSNA----TARVIPPGGATAAGDMAVDVAVPKGSGGGGDVAGTVGAARLRRARPRGVGARVPAAAAATTIAVTAAGAAGVARVKEAAVHSRGVA 785
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15039.3809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWQ1_9PHAE3.300e-3973.61Polynucleotide adenylyltransferase (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15039contigEcto-sp13_S_contig15039:783..1559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size777
Hectar predicted targeting categoryother localisation
Exons1
Cds size594
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.082975-UTR-Ecto-sp13_S_contig15039:782..8611681462801.082975-UTR-Ecto-sp13_S_contig15039:782..861Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15039 783..861 +
1681462801.104766-UTR-Ecto-sp13_S_contig15039:1455..15591681462801.104766-UTR-Ecto-sp13_S_contig15039:1455..1559Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15039 1456..1559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462801.0938628-CDS-Ecto-sp13_S_contig15039:861..14551681462801.0938628-CDS-Ecto-sp13_S_contig15039:861..1455Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15039 862..1455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15039.3809.1prot_Ecto-sp13_S_contig15039.3809.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15039 862..1455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15039.3809.1

>prot_Ecto-sp13_S_contig15039.3809.1 ID=prot_Ecto-sp13_S_contig15039.3809.1|Name=mRNA_Ecto-sp13_S_contig15039.3809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
MTTIPADGNGNTAAAAGGGSGSSPAPNRSSNAQRPATARVIPPGDATAAG
DMTADVAVSKGRGGGGDVAGTVGAAKLRRARPQGVGGRVAAAAAATTIAA
TSAGTAAVARVKEAAVHSRGVAGDGGGGGRGAGGRGGQKEIGAPAKRRRK
SGNGSNGAAAAPGAGGGGGGEAGGNRGDAGSVGKGRGGLAATVRPNE*
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mRNA from alignment at Ecto-sp13_S_contig15039:783..1559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15039.3809.1 ID=mRNA_Ecto-sp13_S_contig15039.3809.1|Name=mRNA_Ecto-sp13_S_contig15039.3809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15039:783..1559+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCGCCCCGGCCGCGGGCGGCCGTACCTCCATCCCCAGAAGCACGCCGC
ACGGCGCCCCCGCCCCCCCCGGCGCGAGGATGACCACCATCCCCGCCGAC
GGCAACGGCAACACGGCTGCCGCGGCGGGAGGCGGGAGCGGCAGCTCTCC
CGCCCCCAACAGGAGCAGCAACGCGCAGCGGCCGGCGACCGCGAGGGTGA
TCCCCCCCGGCGATGCCACCGCCGCCGGCGACATGACCGCCGACGTGGCC
GTCTCGAAGGGAAGAGGCGGCGGCGGGGACGTGGCGGGGACCGTGGGGGC
GGCAAAGCTCCGCCGGGCTCGACCGCAGGGGGTGGGTGGTCGGGTTGCGG
CCGCCGCTGCTGCTACCACGATCGCTGCGACTTCCGCGGGAACGGCCGCA
GTCGCAAGGGTAAAGGAGGCGGCTGTGCATAGCAGAGGGGTTGCCGGCGA
CGGCGGCGGCGGCGGCCGTGGCGCTGGCGGGAGGGGTGGGCAGAAGGAGA
TCGGGGCGCCGGCCAAAAGGAGGAGAAAGTCTGGCAACGGAAGCAACGGC
GCGGCAGCGGCGCCAGGAGCTGGAGGGGGAGGAGGGGGAGAGGCAGGCGG
GAACAGGGGCGACGCGGGTTCCGTAGGCAAGGGCCGCGGAGGCCTGGCCG
CCACCGTTCGGCCGAACGAATGACGAATGATTCCTCCTCCTCCTCCCCCT
TTCCCCCGCGCCTTCTCTTGGCCGGCGGCGGCCCCCGCTGGCGGCAGCGG
CGGCCTTGTCGCCGTCATCGCCCCCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15039:783..1559+

>mRNA_Ecto-sp13_S_contig15039.3809.1 ID=mRNA_Ecto-sp13_S_contig15039.3809.1|Name=mRNA_Ecto-sp13_S_contig15039.3809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15039:783..1559+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCACCATCCCCGCCGACGGCAACGGCAACACGGCTGCCGCGGCGGG
AGGCGGGAGCGGCAGCTCTCCCGCCCCCAACAGGAGCAGCAACGCGCAGC
GGCCGGCGACCGCGAGGGTGATCCCCCCCGGCGATGCCACCGCCGCCGGC
GACATGACCGCCGACGTGGCCGTCTCGAAGGGAAGAGGCGGCGGCGGGGA
CGTGGCGGGGACCGTGGGGGCGGCAAAGCTCCGCCGGGCTCGACCGCAGG
GGGTGGGTGGTCGGGTTGCGGCCGCCGCTGCTGCTACCACGATCGCTGCG
ACTTCCGCGGGAACGGCCGCAGTCGCAAGGGTAAAGGAGGCGGCTGTGCA
TAGCAGAGGGGTTGCCGGCGACGGCGGCGGCGGCGGCCGTGGCGCTGGCG
GGAGGGGTGGGCAGAAGGAGATCGGGGCGCCGGCCAAAAGGAGGAGAAAG
TCTGGCAACGGAAGCAACGGCGCGGCAGCGGCGCCAGGAGCTGGAGGGGG
AGGAGGGGGAGAGGCAGGCGGGAACAGGGGCGACGCGGGTTCCGTAGGCA
AGGGCCGCGGAGGCCTGGCCGCCACCGTTCGGCCGAACGAATGA
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