mRNA_Ecto-sp13_S_contig15035.3806.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15035.3806.1
Unique NamemRNA_Ecto-sp13_S_contig15035.3806.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15035.3806.1 vs. uniprot
Match: A0A6H5JBU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU0_9PHAE)

HSP 1 Score: 591 bits (1523), Expect = 9.680e-210
Identity = 309/339 (91.15%), Postives = 316/339 (93.22%), Query Frame = -3 
Query:    1 ARRDGLSPDDATSTAAAIAGGTGRVIQLRATDSDVKAAARHCVAADEDGRFPANHALGLFETERGRLVPGTPRVTDASVEFSTSPRRQNAGGSNSDETPATGTIGVKVVLEVDNTGRWREGGGGTTSGRRIGEPVPTREDVETAAAAAIAATAEDPAEAQMAISALAAWNLMTTGETPATLPMIRVEVGAAFGYYGDWYTAGKTIPLTSDGSGHSSALLSSATFDWQPAPDVWSKLDEPMAADVRVYGTASTATEEQEEGLLLLRGTLCKRASGFGGRSTHDETTQGTVKAALTPYAERLPAVAAEAVAISPSRPSVVVSEIRDEEWWRAREEEESGRG 1017
            ARRD LSPDDATST AA AGGTGRVIQLRAT+SDVKAAARHCVA DE GRFPANHALGLFETE GRLV GTPRVTDASVEFS  P+RQNAGGSNSDETPATGTI  KVVLEVDNTGRWREGGGGTTSGRR GEPVPT E +E  AAAA AATAE+PAEAQMAISALAAWNLMTT ETPA LPMIRVEVGAAFGY+GDWYTA KTIPLTSDG+GHSSALLSSATFDWQPAPDVWSKLDEPMAADVRVYGTAST TEEQE GLLLLRGTLCKRASGFGGRST DETTQGT+KAALTPYAERLPAVAAEAVAISPSRPSVVVSEIRDEEWWRAREEEESGRG
Sbjct:   26 ARRDALSPDDATSTVAATAGGTGRVIQLRATESDVKAAARHCVAVDEVGRFPANHALGLFETEPGRLVLGTPRVTDASVEFSALPQRQNAGGSNSDETPATGTIVFKVVLEVDNTGRWREGGGGTTSGRRTGEPVPTGEGMEMTAAAATAATAENPAEAQMAISALAAWNLMTTRETPAMLPMIRVEVGAAFGYHGDWYTASKTIPLTSDGTGHSSALLSSATFDWQPAPDVWSKLDEPMAADVRVYGTASTPTEEQEAGLLLLRGTLCKRASGFGGRSTRDETTQGTMKAALTPYAERLPAVAAEAVAISPSRPSVVVSEIRDEEWWRAREEEESGRG 364
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BLAST of mRNA_Ecto-sp13_S_contig15035.3806.1 vs. uniprot
Match: D8LGJ6_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ6_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.610e-29
Identity = 59/66 (89.39%), Postives = 60/66 (90.91%), Query Frame = -3 
Query:  820 ARRDGLSPDDATSTAAAIAGGTGRVIQLRATDSDVKAAARHCVAADEDGRFPANHALGLFETERGR 1017
            ARRD LSPDDATST AA AGGTGRVIQLRAT+SDVKA ARHCVA DEDGRFPANHALGLFETE GR
Sbjct:   25 ARRDALSPDDATSTTAATAGGTGRVIQLRATESDVKAVARHCVAVDEDGRFPANHALGLFETEPGR 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15035.3806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBU0_9PHAE9.680e-21091.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGJ6_ECTSI2.610e-2989.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15035contigEcto-sp13_S_contig15035:2727..3745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1021
Hectar predicted targeting categoryother localisation
Exons1
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462800.935247-CDS-Ecto-sp13_S_contig15035:2726..32541681462800.935247-CDS-Ecto-sp13_S_contig15035:2726..3254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15035 2727..3254 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462800.9468825-UTR-Ecto-sp13_S_contig15035:3254..37451681462800.9468825-UTR-Ecto-sp13_S_contig15035:3254..3745Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15035 3255..3745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15035.3806.1prot_Ecto-sp13_S_contig15035.3806.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15035 2727..3254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15035.3806.1

>prot_Ecto-sp13_S_contig15035.3806.1 ID=prot_Ecto-sp13_S_contig15035.3806.1|Name=mRNA_Ecto-sp13_S_contig15035.3806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
PSPGFLLFAGSPPLFVSYFGNDHGRPGGADRDSFGGNRWKAFGVRRQGRL
HGALCCFVVRASASEARCSLAQRASQQQQPLLLFFRGRRRGAINSHVRCH
RFVELAPDIWCGLPVERRARKQSTAVAASVRSERYGLACRVPVPIVPERG
SHLYPDHRQRSRCFPCRHQVPSGQG*
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mRNA from alignment at Ecto-sp13_S_contig15035:2727..3745+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15035.3806.1 ID=mRNA_Ecto-sp13_S_contig15035.3806.1|Name=mRNA_Ecto-sp13_S_contig15035.3806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1019bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15035:2727..3745+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCTCTCCCGGATTCCTCCTCTTCGCGGGCTCTCCACCACTCTTCGTCTC
GTATTTCGGAAACGACCACGGAAGGCCGGGAGGGGCTGATCGCGACAGCT
TCGGCGGCAACCGCTGGAAGGCGTTCGGCGTAAGGCGTCAAGGCCGCCTT
CACGGTGCCCTGTGTTGTTTCGTCGTGCGTGCTTCGGCCTCCGAAGCCCG
ATGCTCGCTTGCACAGCGTGCCTCGCAACAACAACAGCCCCTCCTCCTGT
TCTTCCGTGGCCGTCGACGCGGTGCCATAAACTCTCACGTCCGCTGCCAT
CGGTTCGTCGAGCTTGCTCCAGACATCTGGTGCGGGCTGCCAGTCGAACG
TCGCGCTCGAAAGCAAAGCACTGCTGTGGCCGCTTCCGTCAGAAGTGAGA
GGTATGGTCTTGCCTGCCGTGTACCAGTCCCCATAGTACCCGAACGCGGC
TCCCACCTCTACCCTGATCATCGGCAACGTAGCCGGTGTTTCCCCTGTCG
TCATCAGGTTCCAAGCGGCCAGGGCTGATATCGCCATCTGCGCCTCCGCG
GGGTCTTCTGCAGTCGCTGCGATCGCAGCAGCTGCCGCCGTCTCCACGTC
CTCTCTTGTCGGAACGGGCTCGCCGATTCTTCTTCCAGAGGTTGTACCAC
CTCCTCCTTCTCTCCATCGTCCCGTATTGTCGACTTCCAGCACCACCTTG
ACGCCGATCGTGCCGGTGGCTGGTGTTTCATCACTATTGCTACCACCAGC
ATTTTGTCGTCGCGGCGATGTGGAGAATTCCACCGATGCGTCCGTGACCC
GAGGAGTGCCCGGTACCAACCGTCCGCGTTCAGTTTCGAAGAGTCCGAGC
GCGTGGTTGGCCGGGAAGCGTCCGTCTTCGTCCGCGGCGACGCAGTGGCG
TGCGGCCGCCTTGACGTCACTGTCCGTCGCCCTAAGCTGGATTACTCGCC
CTGTGCCGCCTGCAATCGCGGCAGCTGTACTGGTAGCGTCATCAGGGCTG
AGGCCATCTCGCCTTGCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15035:2727..3745+

>mRNA_Ecto-sp13_S_contig15035.3806.1 ID=mRNA_Ecto-sp13_S_contig15035.3806.1|Name=mRNA_Ecto-sp13_S_contig15035.3806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15035:2727..3745+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCTCTCCCGGATTCCTCCTCTTCGCGGGCTCTCCACCACTCTTCGTCTC
GTATTTCGGAAACGACCACGGAAGGCCGGGAGGGGCTGATCGCGACAGCT
TCGGCGGCAACCGCTGGAAGGCGTTCGGCGTAAGGCGTCAAGGCCGCCTT
CACGGTGCCCTGTGTTGTTTCGTCGTGCGTGCTTCGGCCTCCGAAGCCCG
ATGCTCGCTTGCACAGCGTGCCTCGCAACAACAACAGCCCCTCCTCCTGT
TCTTCCGTGGCCGTCGACGCGGTGCCATAAACTCTCACGTCCGCTGCCAT
CGGTTCGTCGAGCTTGCTCCAGACATCTGGTGCGGGCTGCCAGTCGAACG
TCGCGCTCGAAAGCAAAGCACTGCTGTGGCCGCTTCCGTCAGAAGTGAGA
GGTATGGTCTTGCCTGCCGTGTACCAGTCCCCATAGTACCCGAACGCGGC
TCCCACCTCTACCCTGATCATCGGCAACGTAGCCGGTGTTTCCCCTGTCG
TCATCAGGTTCCAAGCGGCCAGGGCTGA
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