mRNA_Ecto-sp13_S_contig1502.3799.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1502.3799.1
Unique NamemRNA_Ecto-sp13_S_contig1502.3799.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1502.3799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1502contigEcto-sp13_S_contig1502:15767..15978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size166
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_007730.1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462800.528127-CDS-Ecto-sp13_S_contig1502:15766..158771681462800.528127-CDS-Ecto-sp13_S_contig1502:15766..15877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1502 15767..15877 +
1681462800.5369062-CDS-Ecto-sp13_S_contig1502:15923..159441681462800.5369062-CDS-Ecto-sp13_S_contig1502:15923..15944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1502 15924..15944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462800.5458045-UTR-Ecto-sp13_S_contig1502:15944..159781681462800.5458045-UTR-Ecto-sp13_S_contig1502:15944..15978Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1502 15945..15978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1502.3799.1prot_Ecto-sp13_S_contig1502.3799.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1502 15767..15944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1502.3799.1

>prot_Ecto-sp13_S_contig1502.3799.1 ID=prot_Ecto-sp13_S_contig1502.3799.1|Name=mRNA_Ecto-sp13_S_contig1502.3799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MQACRELPKDSCARFVSSWCRIGLFALWYAYLEASSDRCTGLG*
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mRNA from alignment at Ecto-sp13_S_contig1502:15767..15978+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1502.3799.1 ID=mRNA_Ecto-sp13_S_contig1502.3799.1|Name=mRNA_Ecto-sp13_S_contig1502.3799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1502:15767..15978+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGCATGTCGAGAGCTGCCGAAGGATAGTTGTGCACGTTTTGTGAG
CAGCTGGTGTAGAATTGGTTTGTTTGCTCTGTGGTATGCCTATCTCGAGG
CAAGTTCCGATGTAAATGGGGAGGTTAAGAGAGGTATTGGTGTGGAGACG
ACTGTAGCGATGTACGGGTTTGGGGTGACAATAATCTGGAGCGGACAAAG
GGATCTGACTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1502:15767..15978+

>mRNA_Ecto-sp13_S_contig1502.3799.1 ID=mRNA_Ecto-sp13_S_contig1502.3799.1|Name=mRNA_Ecto-sp13_S_contig1502.3799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1502:15767..15978+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGCATGTCGAGAGCTGCCGAAGGATAGTTGTGCACGTTTTGTGAG
CAGCTGGTGTAGAATTGGTTTGTTTGCTCTGTGGTATGCCTATCTCGAGG
CAAGTTCCGATCGATGTACGGGTTTGGGGTGA
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