mRNA_Ecto-sp13_S_contig15013.3795.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15013.3795.1
Unique NamemRNA_Ecto-sp13_S_contig15013.3795.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15013.3795.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.410e-10
Identity = 39/76 (51.32%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 GRYEEAEPLHEPS*VIGETMLGPEHPGVATSLNNRALLLEHH---------------GEYAEG*PLYERSLAVFEK 183
            G+Y EAEPL+E    I ET LGPEHP VAT+LNNRA LLE                 G+Y E  PLY  SLA+ EK
Sbjct:   31 GKYAEAEPLYERWQAIFETALGPEHPNVATALNNRAGLLEDQRRQTNFSPPLPVTFQGKYEEAEPLYMLSLAIDEK 106          
BLAST of mRNA_Ecto-sp13_S_contig15013.3795.1 vs. uniprot
Match: A0A1J5RTI5_9ZZZZ (Tetratricopeptide repeat protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5RTI5_9ZZZZ)

HSP 1 Score: 59.3 bits (142), Expect = 1.790e-9
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 GRYEEAEPLHEPS*VIGETMLGPEHPGVATSLNNRALLLEHHGEYAEG*PLYERSLAVFEKAV 189
            G Y     + + + VI E  +GP+HP VATSLNN A +  H G+YA+   LY+RSL +++KA+
Sbjct:   40 GEYARGAEVTKSAIVIAEQEMGPDHPEVATSLNNLAAIYVHQGKYAQAVLLYKRSLTIYKKAL 102          
BLAST of mRNA_Ecto-sp13_S_contig15013.3795.1 vs. uniprot
Match: A0A6H5KN14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN14_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.560e-9
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 GRYEEAEPLHEPS*VIGETMLGPEHPGVATSLNNRALLL-----------EHHGEYAEG*PLYERSLAVFEKAVVWIARILPR 216
            G++ EAEPL+  +  I ET LGPEHP VAT+LNNRA LL           +  G++ +  PLY+RSLAV +  VV  A +  R
Sbjct:    2 GKFAEAEPLYRRATEIWETALGPEHPHVATALNNRAGLLIKQVLNNRGLLKAQGKHDQVGPLYDRSLAVEKGGVVESAALNNR 84          
BLAST of mRNA_Ecto-sp13_S_contig15013.3795.1 vs. uniprot
Match: UPI001BE10FAB (tetratricopeptide repeat protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI001BE10FAB)

HSP 1 Score: 55.5 bits (132), Expect = 1.240e-8
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   61 LGPEHPGVATSLNNRALLLEHHGEYAEG*PLYERSLAVFEKA 186
            LGP+HP VATSLNN A L    G+YA+  PL++RSLA++E+A
Sbjct:    2 LGPDHPDVATSLNNLAELYRSQGQYAQAEPLFKRSLAIWERA 43          
BLAST of mRNA_Ecto-sp13_S_contig15013.3795.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.420e-8
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    1 GRYEEAEPLHEPS*VIGETMLGPEHPGVATSLNNRALLLE 120
            G+Y EAEPL+E S  I E +LGPEHP V TSLNNRALLLE
Sbjct:  661 GKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLE 700          
BLAST of mRNA_Ecto-sp13_S_contig15013.3795.1 vs. uniprot
Match: A0A256BF49_9CYAN (Uncharacterized protein n=1 Tax=Pseudanabaena sp. SR411 TaxID=1980935 RepID=A0A256BF49_9CYAN)

HSP 1 Score: 54.7 bits (130), Expect = 3.160e-8
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   46 IGETMLGPEHPGVATSLNNRALLLEHHGEYAEG*PLYERSLAVFEKAV 189
            I E  LG +HP VA SLNN ALL E  G+Y+E  PLY R++ +F+KA+
Sbjct:    6 ILERQLGADHPSVAASLNNLALLYEAQGKYSEAEPLYLRAIQIFKKAL 53          
BLAST of mRNA_Ecto-sp13_S_contig15013.3795.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 6.470e-8
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   43 VIGETMLGPEHPGVATSLNNRALLLEHHGEYAEG*PLYERSLA 171
             I E +LGP+HP +AT+LNNRA LLE  G+Y E  PLYERS A
Sbjct:   84 AIKEKVLGPDHPSLATTLNNRAGLLEAQGKYVEAEPLYERSQA 126          
BLAST of mRNA_Ecto-sp13_S_contig15013.3795.1 vs. uniprot
Match: A0A1A9NP79_9PROT (Uncharacterized protein n=2 Tax=Methylobacillus sp. MM3 TaxID=1848039 RepID=A0A1A9NP79_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 9.130e-8
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 GRYEEAEPLHEPS*VIGETMLGPEHPGVATSLNNRALLLEHHGEYAEG*PLYERSLAVFEKAV 189
            G Y+ A    + S  + E   GP+HP VATSLNN A L +  G+YA+  PLY+RSLA+ EKA+
Sbjct:   38 GNYDNAMATIKKSLQVAERG-GPDHPNVATSLNNLAALYKAKGQYADAEPLYQRSLAIREKAL 99          
BLAST of mRNA_Ecto-sp13_S_contig15013.3795.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.290e-7
Identity = 38/93 (40.86%), Postives = 45/93 (48.39%), Query Frame = 1
Query:    1 GRYEEAEPLHEPS*VIGETMLGPEHPGVATSLNN------------------------------RALLLEHHGEYAEG*PLYERSLAVFEKAV 189
            G+Y+EA  L+E S  I E  LGP+HP VA SLNN                              RALLL+  G Y E   LYERSLA+ EKA+
Sbjct:  832 GKYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWAVLLESQVRAIRIPGSFLWYPIDSGVLNNRALLLKAQGNYDEAGKLYERSLAIREKAL 924          
BLAST of mRNA_Ecto-sp13_S_contig15013.3795.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.760e-7
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    1 GRYEEAEPLHEPS*VIGETMLGPEHPGVATSLNNRALLLE 120
            G+Y EAEPL+E S  I E +LGPEHP VATSL+NRA LLE
Sbjct:  694 GKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLE 733          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15013.3795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5H9_9PHAE1.410e-1051.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1J5RTI5_9ZZZZ1.790e-944.44Tetratricopeptide repeat protein n=1 Tax=mine drai... [more]
A0A6H5KN14_9PHAE3.560e-945.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001BE10FAB1.240e-859.52tetratricopeptide repeat protein n=1 Tax=Klebsiell... [more]
A0A6H5KXS7_9PHAE1.420e-872.50NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A256BF49_9CYAN3.160e-854.17Uncharacterized protein n=1 Tax=Pseudanabaena sp. ... [more]
A0A6H5K0C4_9PHAE6.470e-862.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1A9NP79_9PROT9.130e-849.21Uncharacterized protein n=2 Tax=Methylobacillus sp... [more]
A0A6H5K4D0_9PHAE1.290e-740.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G722_ECTSI1.760e-770.00NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15013contigEcto-sp13_S_contig15013:2422..2917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size219
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionTPR repeat-containing protein
Ec32 orthologEc-27_001880.2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462800.244591-CDS-Ecto-sp13_S_contig15013:2421..25121681462800.244591-CDS-Ecto-sp13_S_contig15013:2421..2512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15013 2422..2512 -
1681462800.2608016-CDS-Ecto-sp13_S_contig15013:2791..29101681462800.2608016-CDS-Ecto-sp13_S_contig15013:2791..2910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15013 2792..2910 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462800.271206-UTR-Ecto-sp13_S_contig15013:2910..29171681462800.271206-UTR-Ecto-sp13_S_contig15013:2910..2917Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15013 2911..2917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15013.3795.1prot_Ecto-sp13_S_contig15013.3795.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15013 2422..2910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15013.3795.1

>prot_Ecto-sp13_S_contig15013.3795.1 ID=prot_Ecto-sp13_S_contig15013.3795.1|Name=mRNA_Ecto-sp13_S_contig15013.3795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MRKPSRCMSRHRSSERRCWAQSTLVWPHRSTTGRCCWSTTASTLRASHCT
SGHLRCSKRLWFGSPEFCHG
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mRNA from alignment at Ecto-sp13_S_contig15013:2422..2917-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15013.3795.1 ID=mRNA_Ecto-sp13_S_contig15013.3795.1|Name=mRNA_Ecto-sp13_S_contig15013.3795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=496bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15013:2422..2917- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGGTATGAGGAAGCCGAGCCGCTGCATGAGCCGTCATAGGTCATCGG AGAGACGATGCTGGGCCCAGAGCACCCTGGTGTGGCCACATCGCTCAACA ACCGGGCGTTGTTGTTGGAGCACCACGTGAGCGACCAACGATGATTTTGT GTTCCTCCGCTGATCCAGATCTCATTTTGAATGAAATCGATTTCTCTACC TCGTTGTCCACTGGTACACATCATGACACGTGTGCTGAGACCGAGTCACT CCATGAACGGCCATGACCCATTTGAGGGGAGGTGCTGGACCTGGAGCACG CGGGTGCGGCCGAGTCGCTCAACATTTGGGCAGGCGTGGTTGGAGATCCC ATTTTGACAAAACAATGATAACAACTTTGCCACGTCGTCTACGATCGCCT GCCAGGGCGAGTACGCTGAGGGCTAGCCACTGTACGAGCGGTCACTTGCG GTGTTCGAAAAGGCTGTGGTTTGGATCGCCCGAATTTTGCCACGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15013:2422..2917-

>mRNA_Ecto-sp13_S_contig15013.3795.1 ID=mRNA_Ecto-sp13_S_contig15013.3795.1|Name=mRNA_Ecto-sp13_S_contig15013.3795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15013:2422..2917- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGAAGCCGAGCCGCTGCATGAGCCGTCATAGGTCATCGGAGAGACG
ATGCTGGGCCCAGAGCACCCTGGTGTGGCCACATCGCTCAACAACCGGGC
GTTGTTGTTGGAGCACCACGGCGAGTACGCTGAGGGCTAGCCACTGTACG
AGCGGTCACTTGCGGTGTTCGAAAAGGCTGTGGTTTGGATCGCCCGAATT
TTGCCACGGT
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