mRNA_Ecto-sp13_S_contig15009.3790.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15009.3790.1
Unique NamemRNA_Ecto-sp13_S_contig15009.3790.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15009.3790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15009contigEcto-sp13_S_contig15009:3140..3520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size381
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462799.8521383-UTR-Ecto-sp13_S_contig15009:3139..31791681462799.8521383-UTR-Ecto-sp13_S_contig15009:3139..3179Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15009 3140..3179 +
1681462799.8799124-UTR-Ecto-sp13_S_contig15009:3503..35201681462799.8799124-UTR-Ecto-sp13_S_contig15009:3503..3520Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15009 3504..3520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462799.865635-CDS-Ecto-sp13_S_contig15009:3179..35031681462799.865635-CDS-Ecto-sp13_S_contig15009:3179..3503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15009 3180..3503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15009.3790.1prot_Ecto-sp13_S_contig15009.3790.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15009 3180..3503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15009.3790.1

>prot_Ecto-sp13_S_contig15009.3790.1 ID=prot_Ecto-sp13_S_contig15009.3790.1|Name=mRNA_Ecto-sp13_S_contig15009.3790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MSRRVHTRQTDTRGKGDTSQPPRATPKQKLSTDLFATQQVGGLLAVEKVQ
YRQSCSVRIRIGGPLQVYTMRVRVCCFALIHFTVIREVASHGVRRGHETI
PRVLLGY*
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mRNA from alignment at Ecto-sp13_S_contig15009:3140..3520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15009.3790.1 ID=mRNA_Ecto-sp13_S_contig15009.3790.1|Name=mRNA_Ecto-sp13_S_contig15009.3790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15009:3140..3520+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGACAAATCCTGACGCTCAGCGGGCTGTTGCCCGAGCAATGTCGAGGA
GAGTTCACACCCGACAGACAGACACAAGAGGAAAGGGCGACACAAGCCAG
CCGCCAAGGGCAACCCCGAAGCAGAAACTCTCTACGGATCTTTTCGCGAC
GCAACAGGTAGGGGGGTTGCTAGCGGTAGAGAAGGTACAGTACCGACAAT
CATGTTCTGTGCGAATCCGGATAGGAGGACCTCTTCAAGTGTATACAATG
CGCGTGCGTGTGTGTTGCTTTGCACTCATTCATTTCACTGTTATTAGGGA
AGTCGCGTCGCACGGCGTCAGGCGGGGGCATGAGACGATCCCACGGGTCC
TGCTTGGTTACTGAATGAAGTCACGCGTCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15009:3140..3520+

>mRNA_Ecto-sp13_S_contig15009.3790.1 ID=mRNA_Ecto-sp13_S_contig15009.3790.1|Name=mRNA_Ecto-sp13_S_contig15009.3790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15009:3140..3520+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAGGAGAGTTCACACCCGACAGACAGACACAAGAGGAAAGGGCGA
CACAAGCCAGCCGCCAAGGGCAACCCCGAAGCAGAAACTCTCTACGGATC
TTTTCGCGACGCAACAGGTAGGGGGGTTGCTAGCGGTAGAGAAGGTACAG
TACCGACAATCATGTTCTGTGCGAATCCGGATAGGAGGACCTCTTCAAGT
GTATACAATGCGCGTGCGTGTGTGTTGCTTTGCACTCATTCATTTCACTG
TTATTAGGGAAGTCGCGTCGCACGGCGTCAGGCGGGGGCATGAGACGATC
CCACGGGTCCTGCTTGGTTACTGA
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