mRNA_Ecto-sp13_S_contig15006.3788.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15006.3788.1
Unique NamemRNA_Ecto-sp13_S_contig15006.3788.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15006.3788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15006contigEcto-sp13_S_contig15006:2643..3499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size857
Hectar predicted targeting categoryother localisation
Exons1
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462799.7019646-UTR-Ecto-sp13_S_contig15006:2642..30311681462799.7019646-UTR-Ecto-sp13_S_contig15006:2642..3031Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15006 2643..3031 +
1681462799.7224033-UTR-Ecto-sp13_S_contig15006:3496..34991681462799.7224033-UTR-Ecto-sp13_S_contig15006:3496..3499Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15006 3497..3499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462799.713245-CDS-Ecto-sp13_S_contig15006:3031..34961681462799.713245-CDS-Ecto-sp13_S_contig15006:3031..3496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15006 3032..3496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15006.3788.1prot_Ecto-sp13_S_contig15006.3788.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15006 3032..3496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15006.3788.1

>prot_Ecto-sp13_S_contig15006.3788.1 ID=prot_Ecto-sp13_S_contig15006.3788.1|Name=mRNA_Ecto-sp13_S_contig15006.3788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MFAVHHLQVKEGRPAASPFRSVELCLSSPSSLSRPLPRPHAEVQGFLCIL
SLSVFISTNRGNAPCSRQFLSICTECTCSLPHVVYQVFICRTTTAKAERG
RRGGVGVMSALLPPPPPPLSLLSSTPVTVKTKNVFMKKARSLCTQRGTTR
PDRR*
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mRNA from alignment at Ecto-sp13_S_contig15006:2643..3499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15006.3788.1 ID=mRNA_Ecto-sp13_S_contig15006.3788.1|Name=mRNA_Ecto-sp13_S_contig15006.3788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=857bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15006:2643..3499+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCACTCTTCATCCTGGTGCGAGATACCATGCATGTCAAGGGACGAATC
AAACGTCTAAACACACGCAGTAAACCCGTACGTTCCAAGGAAGCAGGCCC
GGCTTTAGTTCCCAGCTCTCGGGTCTGCACCCCACCCCCCTGCCAACGCA
AAACACGCCCACGCCCACCCGTAACCTCTCCATCGAACGATCGGCCATAG
ATGTGTCGAGAGGGCAAGCAAGCCCAAACAAACGTGTACGTAATGCGTGA
AACCGTCTGCGGGGGGGGGCGGGGGGTTCGAACAAGATCTAAAAAATGAA
ACAAATCGGTCGTTGTCGTTTATGTGCAACAGCACGCCTCCACACCGATA
CAAAAAAAACACACACACACACAAAACCAAAACTCGTGCATGTTCGCCGT
GCATCATCTTCAAGTGAAAGAAGGGCGGCCGGCGGCCTCTCCTTTCCGCT
CGGTTGAGTTATGTCTTTCTTCGCCCTCATCATTATCCCGCCCACTTCCT
CGTCCACACGCTGAAGTCCAAGGCTTCTTGTGTATACTCTCTCTCTCTGT
GTTTATCTCTACAAACCGAGGAAACGCACCCTGTTCTCGTCAATTTCTTT
CCATCTGCACAGAGTGTACATGTAGTCTACCACATGTAGTCTACCAGGTA
TTTATATGCCGAACAACCACGGCAAAAGCAGAGCGTGGAAGGCGAGGGGG
GGTGGGCGTCATGAGTGCGCTCCTTCCGCCCCCCCCCCCCCCCCTCTCCC
TCCTTTCTTCGACGCCAGTCACGGTCAAAACTAAAAACGTCTTCATGAAG
AAAGCCAGATCTCTTTGCACCCAGCGTGGCACCACACGACCGGATCGACG
TTAGCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15006:2643..3499+

>mRNA_Ecto-sp13_S_contig15006.3788.1 ID=mRNA_Ecto-sp13_S_contig15006.3788.1|Name=mRNA_Ecto-sp13_S_contig15006.3788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15006:2643..3499+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGCCGTGCATCATCTTCAAGTGAAAGAAGGGCGGCCGGCGGCCTC
TCCTTTCCGCTCGGTTGAGTTATGTCTTTCTTCGCCCTCATCATTATCCC
GCCCACTTCCTCGTCCACACGCTGAAGTCCAAGGCTTCTTGTGTATACTC
TCTCTCTCTGTGTTTATCTCTACAAACCGAGGAAACGCACCCTGTTCTCG
TCAATTTCTTTCCATCTGCACAGAGTGTACATGTAGTCTACCACATGTAG
TCTACCAGGTATTTATATGCCGAACAACCACGGCAAAAGCAGAGCGTGGA
AGGCGAGGGGGGGTGGGCGTCATGAGTGCGCTCCTTCCGCCCCCCCCCCC
CCCCCTCTCCCTCCTTTCTTCGACGCCAGTCACGGTCAAAACTAAAAACG
TCTTCATGAAGAAAGCCAGATCTCTTTGCACCCAGCGTGGCACCACACGA
CCGGATCGACGTTAG
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