prot_Ecto-sp13_S_contig14995.3780.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14995.3780.1
Unique Nameprot_Ecto-sp13_S_contig14995.3780.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length872
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14995.3780.1 vs. uniprot
Match: D8LTD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD2_ECTSI)

HSP 1 Score: 1139 bits (2947), Expect = 0.000e+0
Identity = 599/674 (88.87%), Postives = 621/674 (92.14%), Query Frame = 0 
Query:  192 MTGHVKVWDVAALVASPTXXXXXXXXXXNVPTKKEPAAARRGRGKGRGFDEALHAMRPSPGQEGHSNLAALWGVALPMARVTSLSFSPNDSATFALACWDGRMALFLPAAPAQAAVLPPNASLCEASTNTAXXXXXXXXXXXXXXXXXXXXXXGEGVGSKRAWKQVWREAAAPGKVGGGKGRENLEDQDGTFLCWCKASDASTTDVAVSTYCTTTGHYSKRPYGDPDEGERGGEMTLPAPRNAAREFPLPEPPREAYPPAMGPGIEVLAEGGLGGRIGGAVSASRRDGVAREPTAERYLIHGLAAGPGFVALYDSDLCLHIISIAAMISDAFVLPPPTPTIETEALSGHPDKESPGAAADVEASTPPRPTRNVTLVDNDHGLIAACVRRHSGPDSADAAAPPDGGLKLAITWRDACSGVESPDDGECVGQRRGENDRRLSFLPGELAGDYGGGDDDEEGVFCADVRWQRLALFTRETVLVYTRPAREKAGRKGHGTPCGNALGAGGWRAYAEYPIVHGLLLGGASTATSLSKSLPKAPEDLTDIYILVVLGANTQSIGDGPVLSIRSLRDRSVTCRCPLSSSSSSDDVGETGAVARQPRTRVYASPSYGGGVFVVAAEGGSGECARMWRGSFDEVDCRLKIGSSRVITSYPWPEPETLRLQGVAGPNCELILFK 865
            MTGHVKVWDVAALVA+PTXXXXXXXXXX               GKGRGFDEALHAMRPSPGQEGHSNLAALW VALPMARVTSLSFSPNDSATFALACWDG+MALFLPAAPAQAAVLPPNASLCEASTN A        XXXXXXXXXXXX  GEGVGSKRAWKQVWREAAAPGKVGGGKGRENLEDQDGTFLCWCKASDASTT+VAVSTYCTTTG Y+KRP GDPDE ERG E TLPAPRNAA+EFPLPEPPREAYPPAMGPGIEVLAE GLGGRIGGAVSASRRDGV +EPTAERYLIHGLAAGPGFVALYDSDLCLH++SIAAM+SD  VLPPPTP IE EALSGHPD+ SPGA+AD EASTPPRPTRNVTLVDNDHGLIAACVRRHSGP SADAAAPPDGGL LAITWRDA SGVE+PDDGECVGQR GENDRRLSFLPGELAGDYGGGDDDE GVFCADVRWQRLALFTRETVLVYTRPAREKAGRKGHGTPCGNALGAGGWRAYAEYPIVHG+LLGGASTATSLSKSLP+APEDLTD+++LVVLG+N+QS GDGPVLSIRSLRDRSVTCRCPLSSSS  DDVGE GAVARQP TRVYASP YGGGVFVVAAEGGSGECAR+WRGSFDEV C+LK+GSSRVITSYPWPEPE LRLQGVAGPNCELILFK
Sbjct:    1 MTGHVKVWDVAALVAAPTXXXXXXXXXXXXXXXXXXXXXXXX-GKGRGFDEALHAMRPSPGQEGHSNLAALWSVALPMARVTSLSFSPNDSATFALACWDGKMALFLPAAPAQAAVLPPNASLCEASTNAATAGAPTSTXXXXXXXXXXXXDTGEGVGSKRAWKQVWREAAAPGKVGGGKGRENLEDQDGTFLCWCKASDASTTNVAVSTYCTTTGDYAKRPCGDPDEDERGSETTLPAPRNAAKEFPLPEPPREAYPPAMGPGIEVLAERGLGGRIGGAVSASRRDGVTQEPTAERYLIHGLAAGPGFVALYDSDLCLHVVSIAAMLSDTCVLPPPTPKIEVEALSGHPDEASPGASADAEASTPPRPTRNVTLVDNDHGLIAACVRRHSGPGSADAAAPPDGGLDLAITWRDASSGVETPDDGECVGQRTGENDRRLSFLPGELAGDYGGGDDDEGGVFCADVRWQRLALFTRETVLVYTRPAREKAGRKGHGTPCGNALGAGGWRAYAEYPIVHGVLLGGASTATSLSKSLPEAPEDLTDVHLLVVLGSNSQSSGDGPVLSIRSLRDRSVTCRCPLSSSS--DDVGEAGAVARQPGTRVYASPGYGGGVFVVAAEGGSGECARIWRGSFDEVSCQLKMGSSRVITSYPWPEPEMLRLQGVAGPNCELILFK 671
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14995.3780.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTD2_ECTSI0.000e+088.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 255..298
e-value: 200.0
score: 2.5
coord: 162..200
e-value: 0.0029
score: 26.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 175..201
score: 10.007
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 168..209
score: 8.518
IPR011044Quinoprotein amine dehydrogenase, beta chain-likeSUPERFAMILY50969YVTN repeat-like/Quinoprotein amine dehydrogenasecoord: 165..300

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14995contigEcto-sp13_S_contig14995:4..3856 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14995.3780.1mRNA_Ecto-sp13_S_contig14995.3780.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14995 4..3856 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14995.3780.1 ID=prot_Ecto-sp13_S_contig14995.3780.1|Name=mRNA_Ecto-sp13_S_contig14995.3780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=872bp
VVLRRSSYTAYWRDPKAAVSSGAPLLSPRRPDKLVGDSSSKHAAENCTPR
PPSSGVVLSLGLAEVHTGSNGAEGKAVTCCSLLDLHPAGASTAAAPSNKS
SSSSSSRRGTYLIAVGVSFGIECRALDITSQPEAEEVCTREGKHGLGEGH
EADAGAEKLSATCRPLTTIFQGYLVVALAFSPDSSLVAAAAMTGHVKVWD
VAALVASPTPPPPPPPQRSNVPTKKEPAAARRGRGKGRGFDEALHAMRPS
PGQEGHSNLAALWGVALPMARVTSLSFSPNDSATFALACWDGRMALFLPA
APAQAAVLPPNASLCEASTNTATAGAPTSAATAVGGGGGGDNDTGEGVGS
KRAWKQVWREAAAPGKVGGGKGRENLEDQDGTFLCWCKASDASTTDVAVS
TYCTTTGHYSKRPYGDPDEGERGGEMTLPAPRNAAREFPLPEPPREAYPP
AMGPGIEVLAEGGLGGRIGGAVSASRRDGVAREPTAERYLIHGLAAGPGF
VALYDSDLCLHIISIAAMISDAFVLPPPTPTIETEALSGHPDKESPGAAA
DVEASTPPRPTRNVTLVDNDHGLIAACVRRHSGPDSADAAAPPDGGLKLA
ITWRDACSGVESPDDGECVGQRRGENDRRLSFLPGELAGDYGGGDDDEEG
VFCADVRWQRLALFTRETVLVYTRPAREKAGRKGHGTPCGNALGAGGWRA
YAEYPIVHGLLLGGASTATSLSKSLPKAPEDLTDIYILVVLGANTQSIGD
GPVLSIRSLRDRSVTCRCPLSSSSSSDDVGETGAVARQPRTRVYASPSYG
GGVFVVAAEGGSGECARMWRGSFDEVDCRLKIGSSRVITSYPWPEPETLR
LQGVAGPNCELILFKVCSLST*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
IPR011044Quino_amine_DH_bsu