mRNA_Ecto-sp13_S_contig14922.3747.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14922.3747.1
Unique NamemRNA_Ecto-sp13_S_contig14922.3747.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14922.3747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14922contigEcto-sp13_S_contig14922:1629..2926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1212
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_001360.1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462796.3307405-CDS-Ecto-sp13_S_contig14922:1628..18861681462796.3307405-CDS-Ecto-sp13_S_contig14922:1628..1886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14922 1629..1886 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462796.3468313-UTR-Ecto-sp13_S_contig14922:1886..26521681462796.3468313-UTR-Ecto-sp13_S_contig14922:1886..2652Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14922 1887..2652 +
1681462796.359823-UTR-Ecto-sp13_S_contig14922:2738..29261681462796.359823-UTR-Ecto-sp13_S_contig14922:2738..2926Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14922 2739..2926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14922.3747.1prot_Ecto-sp13_S_contig14922.3747.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14922 1629..1886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14922.3747.1

>prot_Ecto-sp13_S_contig14922.3747.1 ID=prot_Ecto-sp13_S_contig14922.3747.1|Name=mRNA_Ecto-sp13_S_contig14922.3747.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MVMIGTALHGRAIDCWGETGAASGKEPHVQCVSWYGSVLSPRSSNKNHGG
SVDRCVNEAVGIRLLSIFLRERDVGRGGEGGGCGG*
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mRNA from alignment at Ecto-sp13_S_contig14922:1629..2926+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14922.3747.1 ID=mRNA_Ecto-sp13_S_contig14922.3747.1|Name=mRNA_Ecto-sp13_S_contig14922.3747.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1298bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14922:1629..2926+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAATGATCGGCACGGCTCTGCACGGGCGCGCGATTGATTGTTGGGG
TGAAACGGGGGCCGCAAGCGGCAAGGAACCCCATGTACAGTGTGTCTCCT
GGTATGGATCAGTATTGAGCCCAAGGAGCAGTAACAAGAACCATGGCGGC
AGTGTCGACAGGTGTGTCAACGAGGCTGTGGGCATTCGACTTCTCTCGAT
TTTTCTTCGGGAAAGGGACGTGGGGAGGGGAGGGGAAGGTGGGGGTTGCG
GGGGGTAAAGTGGCTTTCTCGTGTCAAGGACGTTAAGGGGCACAGTGTTC
TCGTTGCGTGGTACCGTGTAGCATAGCGTAAATTCTACAACGTGAGGGAC
AACTTCCTCGTCGACGATTGCAGAGGAGTTGGGTTGCAAGGGATAACCCA
CTTGTGCCGAAGAAGCGTTTGCTCTGTCTGACATGGGGAATCTTTTGCAT
GTGTGCAGCAAAAGTAGGTGTGGTGTCTATGCTGAGTATGGTGTTTTATA
AGAACGCTCGCTTGTGTTAGGATGAGGGACACATTAAGTTTTCGCCTGGC
TAGTCGCCGTAGAGGGGGGGCGCGCGAAAAATCCACAAAGGCGAGGATTA
TTCACGCGCAGTTTGCATTGAATGCCCTCCTTTTTCTTCTTGACTGCACC
CATGTGCTAAAGCGTGTGATAAGCGTGTGCCGGTGTTTGTACGTACGTTG
TGTGCCATAGGGAGAGAAGATGCTTGGGGAACCCACGGGGTGGGGGGGGA
ATACTGACCACGTCAGTCTGTGATGTGTAGTCAGTTGTGGTGCTTGTCTT
CCTGCGTGCGTTCACCTGGGCGGCACCTTTGACGCTGTTTCTATTGTCTC
TCGCTCTACACAAGTTGTCCTCGCCCTACCCGACTAGATGGGGAAAGAGC
TACACTATACTTGAGCAGAAACAAATCAACCAACGATGCCAGTCTCGTTG
TTCACAGTTGTCCCGGGTTTTATCTACCGCCGCCGAAATTTTGGGGTCGT
CAACGAACCAAAGGCGTCGCTATCGCGGGGGATAGGAGGGGGTGGGTTGG
TGGCGGTGAAAGTAGTCGAAGTGCAGCAAGAATCTGATCGGAAGGCGTCG
TGGATGACAGGCGTACCTGGCGGTTCTCTTGTGCTTCTTTGGGCAGCGAT
CGCTCTTGTTTCTTTGTGAGTATTTTTCGTTGCCGTAGTGACCTAGATTG
AGATGTGTTTGCCAACCAATTGAGCCACAACTCAATTTCCTTTTTTCTCA
TGATGATCGTGGCCTTCGTTGTTTTTCGGTACACGTTTCCTCCCCTAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14922:1629..2926+

>mRNA_Ecto-sp13_S_contig14922.3747.1 ID=mRNA_Ecto-sp13_S_contig14922.3747.1|Name=mRNA_Ecto-sp13_S_contig14922.3747.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14922:1629..2926+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAATGATCGGCACGGCTCTGCACGGGCGCGCGATTGATTGTTGGGG
TGAAACGGGGGCCGCAAGCGGCAAGGAACCCCATGTACAGTGTGTCTCCT
GGTATGGATCAGTATTGAGCCCAAGGAGCAGTAACAAGAACCATGGCGGC
AGTGTCGACAGGTGTGTCAACGAGGCTGTGGGCATTCGACTTCTCTCGAT
TTTTCTTCGGGAAAGGGACGTGGGGAGGGGAGGGGAAGGTGGGGGTTGCG
GGGGGTAA
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