mRNA_Ecto-sp13_S_contig1492.3742.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1492.3742.1
Unique NamemRNA_Ecto-sp13_S_contig1492.3742.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1492.3742.1 vs. uniprot
Match: D7FKK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK4_ECTSI)

HSP 1 Score: 603 bits (1554), Expect = 2.930e-216
Identity = 313/350 (89.43%), Postives = 326/350 (93.14%), Query Frame = 1 
Query:    1 MVESGLMQAVVIVVGLTVLVMVCILFQGRPRPNAFSPEQLGQLRIDREMAKEALLEEKAQRLKERARIHRHNRLVLTARKSAGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEIESIREEASRLVESERPASDFSLLPTPPGQQRRARDGSASSVSRTTDFAKDDHRTMTAPARRGPAYGSSRSPTVAPFVDSRFVHLSTSPAVVPPLDLARLNNNPSKLRSGDTWSYSAAKGGEMLRDRLPSQDGNPNSRHRMRVQARNSPASGHTTRETQELHGGHAVISAFQAPGLTRPKPPAIPFPRAKPETESTELGRESLSARLARLSAGRTPGRVVPVELV 1050
            MVESGLMQAVVIVVGLTVLVMVCILFQGRPRPNAFSPEQLGQ+RI+REMAKEALLEEKAQRLKERARIHRHNRLVLTARK AGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEI+SIREEASRL+ESE PASDFS LPTPPGQQRR RDGSASSV RTTD  +DDHR MTAPARRGPAYG+ RSPT APFVDSRFVHLSTSPAVVPPLD ARLNN+PSK   GD WSY AAKGGEMLRDRLP+QD NPNSR RMRVQARN PASGHTTR+ QELHGG AVIS+FQAPGLT P+PPA+PF RAKPETES ELGRESLSARLARL+AGRTPGRVVPVELV
Sbjct:    1 MVESGLMQAVVIVVGLTVLVMVCILFQGRPRPNAFSPEQLGQIRINREMAKEALLEEKAQRLKERARIHRHNRLVLTARKGAGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEIDSIREEASRLLESE-PASDFSSLPTPPGQQRRVRDGSASSVRRTTDSDQDDHRAMTAPARRGPAYGNGRSPTAAPFVDSRFVHLSTSPAVVPPLDFARLNNDPSKFPPGDVWSYPAAKGGEMLRDRLPTQDRNPNSRQRMRVQARNGPASGHTTRDDQELHGGPAVISSFQAPGLTHPEPPAVPFLRAKPETESKELGRESLSARLARLAAGRTPGRVVPVELV 349
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BLAST of mRNA_Ecto-sp13_S_contig1492.3742.1 vs. uniprot
Match: A0A6H5JIG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG2_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 3.880e-102
Identity = 162/171 (94.74%), Postives = 164/171 (95.91%), Query Frame = 1 
Query:    1 MVESGLMQAVVIVVGLTVLVMVCILFQGRPRPNAFSPEQLGQLRIDREMAKEALLEEKAQRLKERARIHRHNRLVLTARKSAGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEIESIREEASRLVESERPASDFSLLPTPPGQQRRARDGSASSVSRTT 513
            MVESGLMQAVVIVVGLTVLVMVCILFQGRPRPNAFSPEQLGQLRIDREMAKEALLEEKAQRLKERARIHRHNRLVLTARK AGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEI+SIREEASRL+ESE PASDF  LPTPPGQQRRARDGSASS   TT
Sbjct:    1 MVESGLMQAVVIVVGLTVLVMVCILFQGRPRPNAFSPEQLGQLRIDREMAKEALLEEKAQRLKERARIHRHNRLVLTARKGAGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEIDSIREEASRLLESEWPASDFLSLPTPPGQQRRARDGSASSTRGTT 171
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BLAST of mRNA_Ecto-sp13_S_contig1492.3742.1 vs. uniprot
Match: A0A835ZJ30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ30_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.300e-25
Identity = 62/140 (44.29%), Postives = 99/140 (70.71%), Query Frame = 1 
Query:    7 ESGLMQAVVIVVGLTVLVMVCILFQ-GRPR-PNAFSPEQLGQLRIDREMAKEALLEEKAQRLKERARIHRHNRLVLTARKSAGRLL--HGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEIESIREEASRLVE 414
            E G+ QA +IVV + + +++C L+   RPR P  F+P +L ++R+ +E  +EA L+EK Q +++R ++H  NR++LTAR    R++   G  + WD +GR++YG AWD+P+DGN+PLR LFNLP EEI + + +A++LVE
Sbjct:    2 EQGI-QAALIVVAVILFLVICSLYTLFRPRRPRMFTPLELDEIRLRKEEEREAALDEKIQAMQQRKKMHSTNRMMLTARTKTARVVDEEGGAD-WDEKGRAVYGSAWDEPNDGNLPLRELFNLPDEEIRAAKAQAAQLVE 139
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BLAST of mRNA_Ecto-sp13_S_contig1492.3742.1 vs. uniprot
Match: A0A7S4DFT0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFT0_HETAK)

HSP 1 Score: 55.1 bits (131), Expect = 5.300e-6
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:  253 LLHGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEI 378
            ++     ++DA+GR +YGDAWD P DGN PLR L  LP++E+
Sbjct:   69 MVEDGISQYDAKGREVYGDAWDTPVDGNAPLRELLALPEDEL 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1492.3742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKK4_ECTSI2.930e-21689.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIG2_9PHAE3.880e-10294.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZJ30_9STRA1.300e-2544.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DFT0_HETAK5.300e-650.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1492contigEcto-sp13_S_contig1492:2102..4143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score606.3
Seed ortholog evalue9.1e-171
Seed eggNOG ortholog2880.D7FKK4
Model size1053
Hectar predicted targeting categorysignal anchor
Exons4
EggNOG OGs2EYZZ@1,2T0E5@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001760.1
Cds size1053
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.9450366-CDS-Ecto-sp13_S_contig1492:2101..22571681462795.9450366-CDS-Ecto-sp13_S_contig1492:2101..2257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 2102..2257 +
1681462795.955374-CDS-Ecto-sp13_S_contig1492:2637..28281681462795.955374-CDS-Ecto-sp13_S_contig1492:2637..2828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 2638..2828 +
1681462795.9716916-CDS-Ecto-sp13_S_contig1492:3157..33231681462795.9716916-CDS-Ecto-sp13_S_contig1492:3157..3323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 3158..3323 +
1681462795.9811985-CDS-Ecto-sp13_S_contig1492:3603..41431681462795.9811985-CDS-Ecto-sp13_S_contig1492:3603..4143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1492 3604..4143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1492.3742.1prot_Ecto-sp13_S_contig1492.3742.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1492 2102..4143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1492.3742.1

>prot_Ecto-sp13_S_contig1492.3742.1 ID=prot_Ecto-sp13_S_contig1492.3742.1|Name=mRNA_Ecto-sp13_S_contig1492.3742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=351bp
MVESGLMQAVVIVVGLTVLVMVCILFQGRPRPNAFSPEQLGQLRIDREMA
KEALLEEKAQRLKERARIHRHNRLVLTARKSAGRLLHGAQERWDARGRSI
YGDAWDDPHDGNVPLRTLFNLPKEEIESIREEASRLVESERPASDFSLLP
TPPGQQRRARDGSASSVSRTTDFAKDDHRTMTAPARRGPAYGSSRSPTVA
PFVDSRFVHLSTSPAVVPPLDLARLNNNPSKLRSGDTWSYSAAKGGEMLR
DRLPSQDGNPNSRHRMRVQARNSPASGHTTRETQELHGGHAVISAFQAPG
LTRPKPPAIPFPRAKPETESTELGRESLSARLARLSAGRTPGRVVPVELV
*
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mRNA from alignment at Ecto-sp13_S_contig1492:2102..4143+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1492.3742.1 ID=mRNA_Ecto-sp13_S_contig1492.3742.1|Name=mRNA_Ecto-sp13_S_contig1492.3742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2042bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1492:2102..4143+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGAATCGGGTCTCATGCAAGCGGTCGTGATCGTGGTGGGGTTGAC
CGTTCTGGTGATGGTCTGTATTTTGTTTCAAGGAAGACCCCGGCCGAATG
CTTTCTCCCCAGAACAGCTTGGCCAGTTACGAATTGATCGAGAGATGGCG
AAGGAGGTGAGATGAATGTGTCACGCTGCAAAGTTTTTCTCAATTGATGC
ACAATGGTTCGAGGCTAGAGAAAAACTCTACTTGGTCCAGAGTAGAGCTT
TTGCGACTCTCGCATAGACTACATCGTCCAGACTGTGGGAGGCAACATTT
AGCAGAGTACGCTGAATGATGTCCATGTGGAGACGTCAACAAAAACCTTG
CTACAGACTAACCTTCGCTACAGCAGTAGGTTGCATAGGGTTTGATCGTC
GACCAAGGAGGTTGAAATGCGAACGTGTCGAGCCACGAACTTTCTTTACA
CATCTATGTGGCCGTCTAAGATACTGTGCTCGATGCCGTGAGTTTAGCGC
ACGTGTGACTTCTCGGCGCTTCTGCAAACATAACAGGCACTACTAGAAGA
GAAGGCACAGAGATTAAAGGAGCGCGCTCGAATCCACAGGCACAACCGGC
TGGTCCTTACGGCGCGCAAAAGTGCAGGCCGCTTGCTCCACGGCGCGCAA
GAGCGATGGGATGCGCGGGGCAGATCGATCTACGGAGATGCGTGGGACGA
CCCCCACGACGGAAACGTGCCTCTGAGGTCTGCATGAAAAGCTAGCTGCA
TTATGTGCACTAAACAACATGTTTTCAGTACTTTAGTAGAGGTTGCGAGG
CTCTATTGGATACACGTTTACACGGAACGTGAGTGCCGATTGGAACAAAA
GCATATCGTTCAAGGGACACCATGAGACCGGGAGCCTAAGTAGTCACGAC
AAAGTAGTAATATCCGCAAGGGTGCAGAACAGTCCCGAGATCATACTTGG
CTGGTCGCGGCTCACATAACTAAAAGATCAAGGGGATGATACACACACAG
AAAAGCAGCCTGTCTCTCACCATAACACCGGTGCGGGGCTGGCCTCGTTT
CTTCAGGACCCTCTTCAACCTCCCGAAAGAGGAAATTGAGTCGATTCGAG
AAGAGGCAAGCAGACTTGTCGAGTCGGAAAGGCCAGCTAGCGACTTCTCC
CTACTACCGACGCCCCCAGGACAGCAACGCCGGGCCCGAGACGGTTCGGC
TTCAAGCGTCAGCAGAACAACGGTAAGTGGCACGTGAACACCTCGCAGGA
TGGGGACCTCTCCCAAGCCAGGCTTCTCTGCGGTAGCTTGGTGGTTAATC
GTTGGCTCCCTTGGATGACCTTCGCTTGCGCTGAGTTGGTCAACATCTCC
TTTGCAAATGCACGAAGGCCTGAGTGTTTTTGTGTTCGCTCCTAGATAAT
TACTCAAGACTGTCTTCCACGCGAGGTCGACCTAACGCGTGAACGTCCGC
GCCCTATCGCCGTTCTCATATGTGCGGCGAACGTAAACGATAATTGCGGA
AGGATTTCGCCAAAGACGACCATCGAACGATGACAGCACCAGCCCGCCGA
GGGCCTGCTTACGGCAGCAGTCGGTCTCCTACGGTCGCGCCGTTCGTCGA
CTCGCGGTTCGTCCACCTGTCGACATCACCAGCCGTCGTGCCACCGCTTG
ACCTCGCCCGGCTGAACAACAACCCCAGCAAGTTGCGGTCAGGAGATACC
TGGTCCTACTCGGCTGCAAAGGGTGGCGAGATGCTTCGTGACAGACTTCC
TTCACAAGATGGGAACCCGAACTCAAGACATCGCATGCGAGTACAAGCAC
GCAATAGTCCCGCCAGTGGCCACACCACCCGCGAAACACAAGAGCTTCAC
GGGGGCCACGCGGTCATCAGTGCGTTCCAAGCCCCGGGACTAACCCGCCC
CAAACCTCCAGCTATCCCGTTTCCGAGGGCGAAACCAGAAACGGAGAGCA
CAGAGTTGGGACGTGAAAGCTTGTCAGCACGGCTGGCGAGGCTCTCTGCC
GGCAGAACTCCGGGCAGGGTGGTACCAGTAGAGCTTGTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1492:2102..4143+

>mRNA_Ecto-sp13_S_contig1492.3742.1 ID=mRNA_Ecto-sp13_S_contig1492.3742.1|Name=mRNA_Ecto-sp13_S_contig1492.3742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1053bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1492:2102..4143+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGAATCGGGTCTCATGCAAGCGGTCGTGATCGTGGTGGGGTTGAC
CGTTCTGGTGATGGTCTGTATTTTGTTTCAAGGAAGACCCCGGCCGAATG
CTTTCTCCCCAGAACAGCTTGGCCAGTTACGAATTGATCGAGAGATGGCG
AAGGAGGCACTACTAGAAGAGAAGGCACAGAGATTAAAGGAGCGCGCTCG
AATCCACAGGCACAACCGGCTGGTCCTTACGGCGCGCAAAAGTGCAGGCC
GCTTGCTCCACGGCGCGCAAGAGCGATGGGATGCGCGGGGCAGATCGATC
TACGGAGATGCGTGGGACGACCCCCACGACGGAAACGTGCCTCTGAGGAC
CCTCTTCAACCTCCCGAAAGAGGAAATTGAGTCGATTCGAGAAGAGGCAA
GCAGACTTGTCGAGTCGGAAAGGCCAGCTAGCGACTTCTCCCTACTACCG
ACGCCCCCAGGACAGCAACGCCGGGCCCGAGACGGTTCGGCTTCAAGCGT
CAGCAGAACAACGGATTTCGCCAAAGACGACCATCGAACGATGACAGCAC
CAGCCCGCCGAGGGCCTGCTTACGGCAGCAGTCGGTCTCCTACGGTCGCG
CCGTTCGTCGACTCGCGGTTCGTCCACCTGTCGACATCACCAGCCGTCGT
GCCACCGCTTGACCTCGCCCGGCTGAACAACAACCCCAGCAAGTTGCGGT
CAGGAGATACCTGGTCCTACTCGGCTGCAAAGGGTGGCGAGATGCTTCGT
GACAGACTTCCTTCACAAGATGGGAACCCGAACTCAAGACATCGCATGCG
AGTACAAGCACGCAATAGTCCCGCCAGTGGCCACACCACCCGCGAAACAC
AAGAGCTTCACGGGGGCCACGCGGTCATCAGTGCGTTCCAAGCCCCGGGA
CTAACCCGCCCCAAACCTCCAGCTATCCCGTTTCCGAGGGCGAAACCAGA
AACGGAGAGCACAGAGTTGGGACGTGAAAGCTTGTCAGCACGGCTGGCGA
GGCTCTCTGCCGGCAGAACTCCGGGCAGGGTGGTACCAGTAGAGCTTGTG
TAA
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