mRNA_Ecto-sp13_S_contig14912.3739.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14912.3739.1
Unique NamemRNA_Ecto-sp13_S_contig14912.3739.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14912.3739.1 vs. uniprot
Match: A0A6H5JI55_9PHAE (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI55_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 4.240e-30
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 VPLHWYDEYDHIGYDRSGGKVMKRADGTGNAIDAALNARDDPNYARTVYDAYNDREV 171
            VPLHWYDEYDHIGYDRSGGKVMKRADGTGN IDAAL+ARDDPNYARTVYDAYNDREV
Sbjct:  217 VPLHWYDEYDHIGYDRSGGKVMKRADGTGNGIDAALSARDDPNYARTVYDAYNDREV 273
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BLAST of mRNA_Ecto-sp13_S_contig14912.3739.1 vs. uniprot
Match: D7G698_ECTSI (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G698_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 5.040e-30
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 VPLHWYDEYDHIGYDRSGGKVMKRADGTGNAIDAALNARDDPNYARTVYDAYNDREV 171
            VPLHWYDEYDHIGYDRSG KVMKRADGTGN IDAALNARDDPNYARTVYDAYNDREV
Sbjct:   56 VPLHWYDEYDHIGYDRSGSKVMKRADGTGNGIDAALNARDDPNYARTVYDAYNDREV 112
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BLAST of mRNA_Ecto-sp13_S_contig14912.3739.1 vs. uniprot
Match: A0A836CBU6_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.510e-18
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 VPLHWYDEYDHIGYDRSGGKVMKRADGTGNAIDAALNARDDPNYARTVYDAYNDREV 171
            VPLHWYDEYDHIGYDRSG +++K     G  +DAAL A DDPN++RTVYDAYNDR V
Sbjct:   47 VPLHWYDEYDHIGYDRSGKQILKGPAMDG--VDAALAASDDPNFSRTVYDAYNDRRV 101
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BLAST of mRNA_Ecto-sp13_S_contig14912.3739.1 vs. uniprot
Match: W7T295_9STRA (Transducin family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T295_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.780e-17
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 VPLHWYDEYDHIGYDRSGGKVMKRADGTGNAIDAALNARDDPNYARTVYDAYNDREV 171
            VPLHWYDEY+H+GYD  G KVM+   G G  +DAAL +RDDPNY RTVYDA NDR V
Sbjct:  164 VPLHWYDEYEHMGYDLQGKKVMRGRKGDG--LDAALASRDDPNYGRTVYDAVNDRHV 218
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BLAST of mRNA_Ecto-sp13_S_contig14912.3739.1 vs. uniprot
Match: A0A2D4BT84_PYTIN (Ribosome biogenesis protein BOP1 homolog n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BT84_PYTIN)

HSP 1 Score: 82.4 bits (202), Expect = 5.520e-17
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 VPLHWYDEYDHIGYDRSGGKVMKRADGTGNAIDAALNARDDPNYARTVYDAYNDREV 171
            VPL WYD+YDHIGYD SG K++ R++  G+ ID A+ A+DDPNY RTVYDAYNDR++
Sbjct:   35 VPLRWYDDYDHIGYDVSGKKIL-RSNAAGDGIDNAIAAKDDPNYDRTVYDAYNDRKI 90
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BLAST of mRNA_Ecto-sp13_S_contig14912.3739.1 vs. uniprot
Match: A0A2P4YA88_9STRA (BOP1NT domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YA88_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.440e-16
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 VPLHWYDEYDHIGYDRSGGKVMKRADGTGNAIDAALNARDDPNYARTVYDAYNDREV 171
            VPL WY++YDHIGY+  G K+MK  +G G  ID A+ A+DDPNY RTVYDAYNDR++
Sbjct:  100 VPLRWYEDYDHIGYNVDGKKIMKSNNGDG--IDNAIAAKDDPNYDRTVYDAYNDRKI 154
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BLAST of mRNA_Ecto-sp13_S_contig14912.3739.1 vs. uniprot
Match: A0A4D9CM67_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM67_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.630e-16
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 VPLHWYDEYDHIGYDRSGGKVMKRADGTGNAIDAALNARDDPNYARTVYDAYNDREV 171
            VPLHWYDEY+H+GY+  G KVM+   G G  +DAAL +RDDPNY RTVYDA NDR V
Sbjct:  259 VPLHWYDEYEHMGYNLQGKKVMRGRKGDG--LDAALASRDDPNYGRTVYDAVNDRHV 313
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BLAST of mRNA_Ecto-sp13_S_contig14912.3739.1 vs. uniprot
Match: A0A1W0A1J0_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1J0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.700e-16
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 VPLHWYDEYDHIGYDRSGGKVMKRADGTGNAIDAALNARDDPNYARTVYDAYNDREV 171
            VPL WY++YDHIGY   G K++K+  G G  ID A+ A+DDPNYARTVYDAYNDR+V
Sbjct:  127 VPLRWYEDYDHIGYTVDGQKIIKKNKGDG--IDDAIAAKDDPNYARTVYDAYNDRKV 181
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BLAST of mRNA_Ecto-sp13_S_contig14912.3739.1 vs. uniprot
Match: A0A067CQ90_SAPPC (Ribosome biogenesis protein BOP1 homolog n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQ90_SAPPC)

HSP 1 Score: 79.0 bits (193), Expect = 9.150e-16
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 VPLHWYDEYDHIGYDRSGGKVMKRADGTGNAIDAALNARDDPNYARTVYDAYNDREV 171
            VPL WY++YDHIGY   G K++K+  G G  ID A+ A+DDPNYART+YDAYNDR+V
Sbjct:  142 VPLRWYEDYDHIGYTVDGQKIIKQNQGDG--IDNAIAAKDDPNYARTIYDAYNDRKV 196
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BLAST of mRNA_Ecto-sp13_S_contig14912.3739.1 vs. uniprot
Match: A0A0P1AAJ0_PLAHL (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAJ0_PLAHL)

HSP 1 Score: 79.0 bits (193), Expect = 9.160e-16
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 VPLHWYDEYDHIGYDRSGGKVMKRADGTGNAIDAALNARDDPNYARTVYDAYNDREV 171
            VPL WY++YDHIGY+  G KVMK  +G G  ID A+ A+DDPNY RTVYDAYNDR++
Sbjct:  196 VPLRWYEDYDHIGYNIDGKKVMKSNNGDG--IDNAIAAKDDPNYDRTVYDAYNDRKI 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14912.3739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI55_9PHAE4.240e-3096.49Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
D7G698_ECTSI5.040e-3096.49Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
A0A836CBU6_9STRA8.510e-1870.18Ribosome biogenesis protein BOP1 homolog n=1 Tax=T... [more]
W7T295_9STRA1.780e-1768.42Transducin family protein n=1 Tax=Nannochloropsis ... [more]
A0A2D4BT84_PYTIN5.520e-1764.91Ribosome biogenesis protein BOP1 homolog n=2 Tax=P... [more]
A0A2P4YA88_9STRA1.440e-1663.16BOP1NT domain-containing protein (Fragment) n=1 Ta... [more]
A0A4D9CM67_9STRA2.630e-1666.67Ribosome biogenesis protein BOP1 homolog n=1 Tax=N... [more]
A0A1W0A1J0_9STRA6.700e-1664.91Ribosome biogenesis protein BOP1 homolog n=1 Tax=T... [more]
A0A067CQ90_SAPPC9.150e-1663.16Ribosome biogenesis protein BOP1 homolog n=3 Tax=S... [more]
A0A0P1AAJ0_PLAHL9.160e-1664.91Ribosome biogenesis protein BOP1 homolog n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14912contigEcto-sp13_S_contig14912:3926..4096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score120.9
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog2880.D7G698
Preferred nameERB1
Model size171
KEGG koko:K14824
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000027,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0002682,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007276,GO:0008150,GO:0008152,GO:0008283,GO:0009966,GO:0009987,GO:0010467,GO:0010646,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030684,GO:0030686,GO:0030687,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035206,GO:0035690,GO:0042127,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042493,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044877,GO:0046483,GO:0048583,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051302,GO:0051704,GO:0051716,GO:0051726,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070545,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901796,GO:1902531,GO:1990904
Exons1
EggNOG free text desc.rRNA processing
EggNOG OGsKOG0650@1,KOG0650@2759
Cds size171
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.7171438-CDS-Ecto-sp13_S_contig14912:3925..40961681462795.7171438-CDS-Ecto-sp13_S_contig14912:3925..4096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14912 3926..4096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14912.3739.1prot_Ecto-sp13_S_contig14912.3739.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14912 3926..4096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14912.3739.1

>prot_Ecto-sp13_S_contig14912.3739.1 ID=prot_Ecto-sp13_S_contig14912.3739.1|Name=mRNA_Ecto-sp13_S_contig14912.3739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
VPLHWYDEYDHIGYDRSGGKVMKRADGTGNAIDAALNARDDPNYARTVYD
AYNDREV
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mRNA from alignment at Ecto-sp13_S_contig14912:3926..4096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14912.3739.1 ID=mRNA_Ecto-sp13_S_contig14912.3739.1|Name=mRNA_Ecto-sp13_S_contig14912.3739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14912:3926..4096+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCCCCTGCATTGGTACGACGAGTACGACCACATCGGCTACGACCGGAG
CGGGGGCAAGGTGATGAAGAGGGCCGACGGTACCGGGAACGCAATAGATG
CCGCCCTCAACGCAAGGGACGACCCCAACTATGCCAGGACCGTGTACGAC
GCCTACAACGACCGCGAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14912:3926..4096+

>mRNA_Ecto-sp13_S_contig14912.3739.1 ID=mRNA_Ecto-sp13_S_contig14912.3739.1|Name=mRNA_Ecto-sp13_S_contig14912.3739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14912:3926..4096+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCCCCTGCATTGGTACGACGAGTACGACCACATCGGCTACGACCGGAG
CGGGGGCAAGGTGATGAAGAGGGCCGACGGTACCGGGAACGCAATAGATG
CCGCCCTCAACGCAAGGGACGACCCCAACTATGCCAGGACCGTGTACGAC
GCCTACAACGACCGCGAGGTA
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