mRNA_Ecto-sp13_S_contig14910.3738.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14910.3738.1
Unique NamemRNA_Ecto-sp13_S_contig14910.3738.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14910.3738.1 vs. uniprot
Match: D7FSI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI4_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 7.840e-19
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1
Query:    1 IRPASLAIRAFNVETAAIKDSVRGNVMPGKMRIQWWKDAMAGVF 132
            +RPASLAIRAFNVETAAIKDSVRGNVMPGKMR+QWWKD MA VF
Sbjct:   40 LRPASLAIRAFNVETAAIKDSVRGNVMPGKMRMQWWKDTMADVF 83          
BLAST of mRNA_Ecto-sp13_S_contig14910.3738.1 vs. uniprot
Match: A0A4D9CW87_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW87_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.600e-9
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    4 RPASLAIRAFNVETAAIKDSVRGNVMPGKMRIQWWKDAMAGVF 132
            R A  A+RAFNVETA IKD  RGN +PG+MR+QWW++ ++ ++
Sbjct:   52 RRAYFALRAFNVETALIKDVARGNTLPGQMRMQWWREVISAIY 94          
BLAST of mRNA_Ecto-sp13_S_contig14910.3738.1 vs. uniprot
Match: A0A5C5FLZ8_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5FLZ8_9BASI)

HSP 1 Score: 53.9 bits (128), Expect = 1.770e-8
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 IRPASLAIRAFNVETAAIKDSVRGNVMPGKMRIQWWKDAMAGVF 132
            ++PA  A+RAFNVE AA+ D V  N M G+MR QWWKDA+ G++
Sbjct:   21 LQPAYWALRAFNVELAALPDQV-SNQMIGRMRFQWWKDAVKGLY 63          
BLAST of mRNA_Ecto-sp13_S_contig14910.3738.1 vs. uniprot
Match: A0A1Y2FS30_9BASI (Squalene/phytoene synthase n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2FS30_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 2.090e-8
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    4 RPASLAIRAFNVETAAIKDSVRGNVMPGKMRIQWWKDAMAGVFGS 138
            RPA LA++AFNVE A I D+V  N M G+MR QWW+DA+ GVF S
Sbjct:   49 RPAYLALKAFNVELATIDDNV-SNPMVGRMRYQWWRDAVKGVFES 92          
BLAST of mRNA_Ecto-sp13_S_contig14910.3738.1 vs. uniprot
Match: A0A0H5FT96_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Leucosporidium scottii TaxID=5278 RepID=A0A0H5FT96_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 2.210e-8
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1
Query:    4 RPASLAIRAFNVETAAIKDSVRGNVMPGKMRIQWWKDAMAGVF 132
            RPA LA+RAFNVE A I D+V  N M G++R QWW+DA+ GVF
Sbjct:   49 RPAYLALRAFNVELATIDDNV-SNAMVGRLRYQWWRDAVKGVF 90          
BLAST of mRNA_Ecto-sp13_S_contig14910.3738.1 vs. uniprot
Match: A0A0D6EMP0_SPOSA (SPOSA6832_02687-mRNA-1:cds n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6EMP0_SPOSA)

HSP 1 Score: 56.6 bits (135), Expect = 4.020e-8
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    1 IRPASLAIRAFNVETAAIKDSVRGNVMPGKMRIQWWKDAMAGVF 132
            +RPA LA++AFNVE A ++D V   ++ G+MR QWW+DA+ GVF
Sbjct:   47 VRPAYLALKAFNVELAGVQDQVSNQIV-GRMRFQWWRDAIKGVF 89          
BLAST of mRNA_Ecto-sp13_S_contig14910.3738.1 vs. uniprot
Match: A0A835YPK2_9STRA (Squalene/phytoene synthase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.410e-8
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    4 RPASLAIRAFNVETAAIKDSVRGNVMPGKMRIQWWKDAMAGVF 132
            RP+ LA+RAFNVE A+IK++VR N   G MR+QWW D +  V+
Sbjct:   63 RPSLLALRAFNVEIASIKEAVRNNTRSGTMRMQWWMDVVNAVY 105          
BLAST of mRNA_Ecto-sp13_S_contig14910.3738.1 vs. uniprot
Match: A0A3R7J1V0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J1V0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 6.980e-8
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    4 RPASLAIRAFNVETAAIKDSVRGNVMPGKMRIQWWKDAMAGVFGS 138
            RP+  AIRA N E A IKDSV  N + GK+R+QWW+D + G++ +
Sbjct:   29 RPSYFAIRALNAEVATIKDSVHSNHVTGKIRMQWWRDRIFGLYAA 73          
BLAST of mRNA_Ecto-sp13_S_contig14910.3738.1 vs. uniprot
Match: A0A3F2RY73_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RY73_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.380e-7
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    4 RPASLAIRAFNVETAAIKDSVRGNVMPGKMRIQWWKDAMAGVFGS 138
            RP+  AIRA N E A IKDSV  N + GK+R+QWW+D + G++ +
Sbjct:   55 RPSYFAIRALNAEVATIKDSVHSNHVTGKIRMQWWRDRIFGLYAA 99          
BLAST of mRNA_Ecto-sp13_S_contig14910.3738.1 vs. uniprot
Match: A0A316ZCR7_9BASI (Uncharacterized protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZCR7_9BASI)

HSP 1 Score: 54.3 bits (129), Expect = 2.700e-7
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 IRPASLAIRAFNVETAAIKDSVRGNVMPGKMRIQWWKDAMAGVF 132
            +RP  LA+RAFNVETA IKD+V    + G++R+ WW+DA+ G F
Sbjct:   71 LRPHYLALRAFNVETATIKDNVSNETL-GRIRVGWWRDAVRGAF 113          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14910.3738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSI4_ECTSI7.840e-1990.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CW87_9STRA1.600e-955.81Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A5C5FLZ8_9BASI1.770e-856.82Uncharacterized protein (Fragment) n=1 Tax=Rhodoto... [more]
A0A1Y2FS30_9BASI2.090e-862.22Squalene/phytoene synthase n=1 Tax=Leucosporidium ... [more]
A0A0H5FT96_9BASI2.210e-862.79Uncharacterized protein (Fragment) n=1 Tax=Leucosp... [more]
A0A0D6EMP0_SPOSA4.020e-854.55SPOSA6832_02687-mRNA-1:cds n=1 Tax=Sporidiobolus s... [more]
A0A835YPK2_9STRA5.410e-855.81Squalene/phytoene synthase-domain-containing prote... [more]
A0A3R7J1V0_9STRA6.980e-851.11Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A3F2RY73_9STRA1.380e-751.11Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A316ZCR7_9BASI2.700e-754.55Uncharacterized protein n=1 Tax=Tilletiopsis washi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14910contigEcto-sp13_S_contig14910:4161..4298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score85.5
Seed ortholog evalue7.1e-15
Seed eggNOG ortholog2880.D7FSI4
Model size138
KEGG koko:K18163
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsCOG1562@1,KOG4411@2759
Cds size138
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.5727286-CDS-Ecto-sp13_S_contig14910:4160..42981681462795.5727286-CDS-Ecto-sp13_S_contig14910:4160..4298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14910 4161..4298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14910.3738.1prot_Ecto-sp13_S_contig14910.3738.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14910 4161..4298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14910.3738.1

>prot_Ecto-sp13_S_contig14910.3738.1 ID=prot_Ecto-sp13_S_contig14910.3738.1|Name=mRNA_Ecto-sp13_S_contig14910.3738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
IRPASLAIRAFNVETAAIKDSVRGNVMPGKMRIQWWKDAMAGVFGS
back to top

mRNA from alignment at Ecto-sp13_S_contig14910:4161..4298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14910.3738.1 ID=mRNA_Ecto-sp13_S_contig14910.3738.1|Name=mRNA_Ecto-sp13_S_contig14910.3738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14910:4161..4298+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAGACCAGCATCTCTAGCCATTAGAGCGTTCAACGTGGAGACTGCCGC CATCAAGGACTCAGTCCGAGGGAACGTTATGCCGGGGAAGATGCGGATCC AGTGGTGGAAGGACGCGATGGCAGGTGTGTTCGGAAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14910:4161..4298+

>mRNA_Ecto-sp13_S_contig14910.3738.1 ID=mRNA_Ecto-sp13_S_contig14910.3738.1|Name=mRNA_Ecto-sp13_S_contig14910.3738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14910:4161..4298+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAGACCAGCATCTCTAGCCATTAGAGCGTTCAACGTGGAGACTGCCGC
CATCAAGGACTCAGTCCGAGGGAACGTTATGCCGGGGAAGATGCGGATCC
AGTGGTGGAAGGACGCGATGGCAGGTGTGTTCGGAAGC
back to top