mRNA_Ecto-sp13_S_contig1491.3737.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1491.3737.1
Unique NamemRNA_Ecto-sp13_S_contig1491.3737.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1491.3737.1 vs. uniprot
Match: D8LHN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN0_ECTSI)

HSP 1 Score: 383 bits (983), Expect = 1.040e-133
Identity = 205/208 (98.56%), Postives = 205/208 (98.56%), Query Frame = 2 
Query:   38 MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERFEEPLRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALKTTTPQAMGAHARALNVD 661
            MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTL LLRDTLVEGGMSEERF E LRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALKTTTPQAMGAHARALNVD
Sbjct:    1 MLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLGLLRDTLVEGGMSEERFVEALRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALKTTTPQAMGAHARALNVD 208
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BLAST of mRNA_Ecto-sp13_S_contig1491.3737.1 vs. uniprot
Match: A0A6H5K7E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E8_9PHAE)

HSP 1 Score: 385 bits (988), Expect = 4.020e-122
Identity = 205/210 (97.62%), Postives = 207/210 (98.57%), Query Frame = 2 
Query:   32 EDMLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERFEEPLRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALKTTTPQAMGAHARALNVD 661
            EDMLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEER+RDALMVLFETEDVTSADICAQVAEMTRVV+VNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERF E LRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLAL TTTPQAMGAHARALNVD
Sbjct: 1103 EDMLEGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERIRDALMVLFETEDVTSADICAQVAEMTRVVSVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERFVEALRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALNTTTPQAMGAHARALNVD 1312
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BLAST of mRNA_Ecto-sp13_S_contig1491.3737.1 vs. uniprot
Match: A0A835YNA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.850e-5
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 2 
Query:  449 MSEERFEEPLRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALKTTTPQAMGAHARALNVD 661
            M    F   L   GL     FL +R    L+ ++RH+EAVF  +YNE++PLAL      A  AH  A+NVD
Sbjct:    1 MDAAAFGAELAARGLGGVAPFLTERAAALLLRVQRHSEAVFTPYYNELVPLAL------AGDAHEAAMNVD 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1491.3737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHN0_ECTSI1.040e-13398.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7E8_9PHAE4.020e-12297.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNA3_9STRA4.850e-540.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1491contigEcto-sp13_S_contig1491:14204..15863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size672
Hectar predicted targeting categoryother localisation
Exons3
Cds size672
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462795.331758-CDS-Ecto-sp13_S_contig1491:14203..144741681462795.331758-CDS-Ecto-sp13_S_contig1491:14203..14474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1491 14204..14474 +
1681462795.3457594-CDS-Ecto-sp13_S_contig1491:14851..150641681462795.3457594-CDS-Ecto-sp13_S_contig1491:14851..15064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1491 14852..15064 +
1681462795.357131-CDS-Ecto-sp13_S_contig1491:15675..158631681462795.357131-CDS-Ecto-sp13_S_contig1491:15675..15863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1491 15676..15863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1491.3737.1prot_Ecto-sp13_S_contig1491.3737.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1491 14204..15863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1491.3737.1

>prot_Ecto-sp13_S_contig1491.3737.1 ID=prot_Ecto-sp13_S_contig1491.3737.1|Name=mRNA_Ecto-sp13_S_contig1491.3737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
SGGRREGRPAGGHARGRGGAGDADAGQVPPGRDRGGGGAGGVHSVPRGLR
PADPGGRADTAGEGGRGARAGRPDGAVRDRGCYQRRHLCSGGRDDTSGGR
ERGQGAAGQPAVGPVGAFPERADDGRLPRVQDLPPTNPGAAARHAGGGWH
VGRTLRGALAQGGAVRLQGLPAAASRETTGGHRAPQRSRVRHVLQRDHPV
SAQDHDSAGDGRSREGPQRGLTY*
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mRNA from alignment at Ecto-sp13_S_contig1491:14204..15863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1491.3737.1 ID=mRNA_Ecto-sp13_S_contig1491.3737.1|Name=mRNA_Ecto-sp13_S_contig1491.3737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1491:14204..15863+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGTGGCCGTCGAGAGGGACGACCAGCAGGAGGACATGCTCGAGGGCG
TGGCGGTGCCGGAGACGCTGATGCTGGACAGGTACCGCCTGGTCGTGATC
GCGGCGGCGGCGGAGCAGGCGGCGTACACAGCGTCCCTCGTGGCCTTCGC
CCGGCAGACCCTGGGGGCCGTGCGGATACCGCTGGCGAGGGCGGACGAGG
AGCGCGTGCGGGACGCCCTGATGGTGCTGTTCGAGACCGAGGATGTTACC
AGCGCCGACATCTGTGCTCAGGTATGTATGCCTTGTTTGTTGGTTGTGTG
AGATCATTGTTGAAAGAAGCAGCAGGTATGTATGTATGCCAGTGCCTCGC
TTTGTTGAGATCATCGTCAAAGAACGCGGGTTAGGCACCCCACTAAAGAA
TCGCAGTCGAGCGCGCGCCCGACCACCCGCGAGCGTGGGGTGTGTGTGTG
ATGATTCGAACTGTCGCTAGAATCGATCGTGTAGTAGAGCACATGTTCGT
CGGACCCCCCAGAAACCAACCTCGAACGTCCGTCCTTGCCCCTCCCTCCC
CGCCCCAATACCTCCTCCGGGATGTACCGACGCCATGTGCGAACCGGTTC
ATCACGCATTCCACAAACCTTTAACAACAAACACCACTTTTTATTTAGGT
GGCCGAGATGACACGAGTGGTGGCCGTGAACGCGGGCAAGGTGCTGCCGG
CCAACCAGCTGTCGGTCCTGTCGGCGCGTTCCCGGAACGTGCTGACGACG
GGCGACTGCCCCGTGTACAAGATCTTCCTCCGACGAACCCTGGCGCTGCT
GCGAGACACGCTGGTGGAGGGTGGCATGTCGGAAGAACGCTTCGAGGAGC
CCTTGCGCAAGGTGGGTAACCCTAACGCTAAACCGAACCCTAACCCTAAC
CCTAAGGTGGGTGGGTGGGTGGGTAGGTGGGTGCAGATGGCGGTGGTGGC
GGTGGTGGTGGTGGTGTGTTACACCCAAGTGGGGTTTGCGGGCGGCAGGG
GTGGGGGCGCCGCCGGGGACCTCCTTCGCGAGGACTTAACAACTTCACAG
TTGATGTTGCAATGTAGATAGGGGGATTCGTAACCCTACCCCTAACCCTA
CCCCCTCAATCAGCACCTATCGGCCAAAACTAAGCTTTTTATCCTGACGA
AGGCTACTAGGCGGCAGGGCGGAGGGGAGGGGAGTTGCAAGCCGGGCGAG
TTGCCTTGTCAAGTGTACTGAGTGGTTATGTCGGTCTGTAGATGTGTGGG
ACGCCCTACTACCCCGGCGCAGTACAGCAGTACACCGTCCGTATGGCGCT
TTAGTTATGTGCATCTACATTGTTTGTCTGTCCTCCGCCGGCTAGCTCTC
GGTTTTGTCTTGAGGTAGTTTTCTTGTGTCGGGCCCACCCCCCCTTCCCT
TCCTTGCAAGTGCTTCGATTCAGTATTTACTCCACATGCAACCACCAAAA
TTTGTACTGTTCTTTTTTTCAGGCGGGGCTGTTAGACTACAAGGACTTCC
TGCTGCAGCGAGTCGTGAGACCACTGGTGGTCATCGAGCGCCACAACGAA
GCCGTGTTCGCCACGTTTTACAACGAGATCATCCCGTTAGCGCTCAAGAC
CACGACTCCGCAGGCGATGGGCGCTCACGCGAGGGCCCTCAACGTGGACT
AACATATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1491:14204..15863+

>mRNA_Ecto-sp13_S_contig1491.3737.1 ID=mRNA_Ecto-sp13_S_contig1491.3737.1|Name=mRNA_Ecto-sp13_S_contig1491.3737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1491:14204..15863+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGTGGCCGTCGAGAGGGACGACCAGCAGGAGGACATGCTCGAGGGCG
TGGCGGTGCCGGAGACGCTGATGCTGGACAGGTACCGCCTGGTCGTGATC
GCGGCGGCGGCGGAGCAGGCGGCGTACACAGCGTCCCTCGTGGCCTTCGC
CCGGCAGACCCTGGGGGCCGTGCGGATACCGCTGGCGAGGGCGGACGAGG
AGCGCGTGCGGGACGCCCTGATGGTGCTGTTCGAGACCGAGGATGTTACC
AGCGCCGACATCTGTGCTCAGGTGGCCGAGATGACACGAGTGGTGGCCGT
GAACGCGGGCAAGGTGCTGCCGGCCAACCAGCTGTCGGTCCTGTCGGCGC
GTTCCCGGAACGTGCTGACGACGGGCGACTGCCCCGTGTACAAGATCTTC
CTCCGACGAACCCTGGCGCTGCTGCGAGACACGCTGGTGGAGGGTGGCAT
GTCGGAAGAACGCTTCGAGGAGCCCTTGCGCAAGGCGGGGCTGTTAGACT
ACAAGGACTTCCTGCTGCAGCGAGTCGTGAGACCACTGGTGGTCATCGAG
CGCCACAACGAAGCCGTGTTCGCCACGTTTTACAACGAGATCATCCCGTT
AGCGCTCAAGACCACGACTCCGCAGGCGATGGGCGCTCACGCGAGGGCCC
TCAACGTGGACTAACATATTGA
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