prot_Ecto-sp13_S_contig14890.3722.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14890.3722.1
Unique Nameprot_Ecto-sp13_S_contig14890.3722.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length407
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14890.3722.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 563 bits (1451), Expect = 6.360e-189
Identity = 348/407 (85.50%), Postives = 354/407 (86.98%), Query Frame = 0 
Query:    1 QGRPQARDGRVADAGVAICRHLSLLASSPPRPATAFAAAEKPLQNGLGGXXXXXGPLLASCSSTSGGVGGEVEAVGGGEEVELTIPELSRIGFEVEQSTTRAKTLVEAALAGDASKASLVKMEGMDALDGAGSNGAAGYNEFSSRNLSRAPDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQERKRLSEHFVKGEAEESGAASGASSAGXXXXXXXXXXXXXXXXSAKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXXLQQKLSPQATAAGGSVSVKARLPPKARRSSADVVLCSLERLAEVDGGVSADARLARSVRWSQ 407
            +GRPQARDGRVADAGVAICRHLSLL SSPP                   XXXX GPLLASC STSGG+GG       GEE+ELT+PELSRIGFEVEQ TTRAK LVEAALAGDA KAS VKMEG+DALDG G NGAAGYNEFSSRNLSRAPDSWGMAVHLLPHQ KALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFL QE KRLSEH VKGEAEESGAASGASSAGXXXXXXXXXXXXX   S KAS P +G LAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXX    LQQKLSPQATAAGGSVS KARLPP ARRSS DVVLCSLERLAEVDGGVSADARLARSVRWSQ
Sbjct:  372 EGRPQARDGRVADAGVAICRHLSLLGSSPPXXXXXXXXXXXXXXXXXXXXXXXKGPLLASCPSTSGGIGG-------GEEMELTMPELSRIGFEVEQLTTRAKALVEAALAGDAGKASPVKMEGLDALDGTGINGAAGYNEFSSRNLSRAPDSWGMAVHLLPHQEKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLVQEEKRLSEHLVKGEAEESGAASGASSAGXXXXXXXXXXXXXGRTSTKASRPGRGALAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXX----LQQKLSPQATAAGGSVSGKARLPPTARRSSVDVVLCSLERLAEVDGGVSADARLARSVRWSQ 767
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BLAST of mRNA_Ecto-sp13_S_contig14890.3722.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 535 bits (1377), Expect = 1.330e-170
Identity = 341/392 (86.99%), Postives = 346/392 (88.27%), Query Frame = 0 
Query:    1 QGRPQARDGRVADAGVAICRHLSLLASSPPRPATAFAAAEKPLQNGLGGXXXXXGPLLASCSSTSGGVGGEVEAVGGGEEVELTIPELSRIGFEVEQSTTRAKTLVEAALAGDASKASLVKMEGMDALDGAGSNGAAGYNEFSSRNLSRAPDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQERKRLSEHFVKGEAEESGAASGASSAGXXXXXXXXXXXXXXXXSAKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXXLQQKLSPQATAAGGSVSVKARLPPKARRSSADVVLCSLERLAEVDGG 392
            +GRPQARDGRVADAGVAICRHLSLLASSP                    XXXX GPLLAS SS  GGVGGE EAVGGGEEVELT+PELSRIGFEVEQ TTRAK LVEA+LAGDA KAS VK+EGM A DG GSNG AGY EFSSRNLSRAPDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQE+KRLSE  VKGEAEESGAASG     XXXXXXXXXXXXXXXX  KASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXX QQKLSPQATAAGGSVS KARLPP ARRSSADVVLCSLERLAEVDGG
Sbjct:  804 EGRPQARDGRVADAGVAICRHLSLLASSPXXXXXXXXXXXXXXXXXXXXXXXXKGPLLASWSS--GGVGGETEAVGGGEEVELTMPELSRIGFEVEQLTTRAKALVEASLAGDAGKASPVKIEGMVASDGPGSNGVAGYEEFSSRNLSRAPDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQEKKRLSERLVKGEAEESGAASGXXXXXXXXXXXXXXXXXXXXXXXKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXXXQQKLSPQATAAGGSVSGKARLPPTARRSSADVVLCSLERLAEVDGG 1193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14890.3722.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE6.360e-18985.50SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7FME7_ECTSI1.330e-17086.99Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 138..219
e-value: 1.2E-8
score: 36.0
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 178..387
e-value: 1.7E-7
score: 30.3
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 127..406
NoneNo IPR availablePANTHERPTHR10799:SF964SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1coord: 127..406
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 154..322

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14890contigEcto-sp13_S_contig14890:423..4063 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14890.3722.1mRNA_Ecto-sp13_S_contig14890.3722.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14890 423..4063 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14890.3722.1 ID=prot_Ecto-sp13_S_contig14890.3722.1|Name=mRNA_Ecto-sp13_S_contig14890.3722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=407bp
QGRPQARDGRVADAGVAICRHLSLLASSPPRPATAFAAAEKPLQNGLGGG
GGGKGPLLASCSSTSGGVGGEVEAVGGGEEVELTIPELSRIGFEVEQSTT
RAKTLVEAALAGDASKASLVKMEGMDALDGAGSNGAAGYNEFSSRNLSRA
PDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVA
MVAACRSVVETERTDIFLAQERKRLSEHFVKGEAEESGAASGASSAGGAG
SKSQGAAAKGGGTSAKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMAR
WHMELAQACPRLVIKVWEEWRSQEHHHLSATAVATAAASSSPPSSLQQKL
SPQATAAGGSVSVKARLPPKARRSSADVVLCSLERLAEVDGGVSADARLA
RSVRWSQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038718SNF2-like_sf
IPR000330SNF2_N
IPR027417P-loop_NTPase