mRNA_Ecto-sp13_S_contig14890.3722.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14890.3722.1
Unique NamemRNA_Ecto-sp13_S_contig14890.3722.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14890.3722.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 563 bits (1451), Expect = 6.360e-189
Identity = 348/407 (85.50%), Postives = 354/407 (86.98%), Query Frame = 1 
Query:    1 QGRPQARDGRVADAGVAICRHLSLLASSPPRPATAFAAAEKPLQNGLGGXXXXXGPLLASCSSTSGGVGGEVEAVGGGEEVELTIPELSRIGFEVEQSTTRAKTLVEAALAGDASKASLVKMEGMDALDGAGSNGAAGYNEFSSRNLSRAPDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQERKRLSEHFVKGEAEESGAASGASSAGXXXXXXXXXXXXXXXXSAKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXXLQQKLSPQATAAGGSVSVKARLPPKARRSSADVVLCSLERLAEVDGGVSADARLARSVRWSQ 1221
            +GRPQARDGRVADAGVAICRHLSLL SSPP                   XXXX GPLLASC STSGG+GG       GEE+ELT+PELSRIGFEVEQ TTRAK LVEAALAGDA KAS VKMEG+DALDG G NGAAGYNEFSSRNLSRAPDSWGMAVHLLPHQ KALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFL QE KRLSEH VKGEAEESGAASGASSAGXXXXXXXXXXXXX   S KAS P +G LAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXX    LQQKLSPQATAAGGSVS KARLPP ARRSS DVVLCSLERLAEVDGGVSADARLARSVRWSQ
Sbjct:  372 EGRPQARDGRVADAGVAICRHLSLLGSSPPXXXXXXXXXXXXXXXXXXXXXXXKGPLLASCPSTSGGIGG-------GEEMELTMPELSRIGFEVEQLTTRAKALVEAALAGDAGKASPVKMEGLDALDGTGINGAAGYNEFSSRNLSRAPDSWGMAVHLLPHQEKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLVQEEKRLSEHLVKGEAEESGAASGASSAGXXXXXXXXXXXXXGRTSTKASRPGRGALAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXX----LQQKLSPQATAAGGSVSGKARLPPTARRSSVDVVLCSLERLAEVDGGVSADARLARSVRWSQ 767
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BLAST of mRNA_Ecto-sp13_S_contig14890.3722.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 535 bits (1377), Expect = 1.330e-170
Identity = 341/392 (86.99%), Postives = 346/392 (88.27%), Query Frame = 1 
Query:    1 QGRPQARDGRVADAGVAICRHLSLLASSPPRPATAFAAAEKPLQNGLGGXXXXXGPLLASCSSTSGGVGGEVEAVGGGEEVELTIPELSRIGFEVEQSTTRAKTLVEAALAGDASKASLVKMEGMDALDGAGSNGAAGYNEFSSRNLSRAPDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQERKRLSEHFVKGEAEESGAASGASSAGXXXXXXXXXXXXXXXXSAKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXXLQQKLSPQATAAGGSVSVKARLPPKARRSSADVVLCSLERLAEVDGG 1176
            +GRPQARDGRVADAGVAICRHLSLLASSP                    XXXX GPLLAS SS  GGVGGE EAVGGGEEVELT+PELSRIGFEVEQ TTRAK LVEA+LAGDA KAS VK+EGM A DG GSNG AGY EFSSRNLSRAPDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQE+KRLSE  VKGEAEESGAASG     XXXXXXXXXXXXXXXX  KASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXX QQKLSPQATAAGGSVS KARLPP ARRSSADVVLCSLERLAEVDGG
Sbjct:  804 EGRPQARDGRVADAGVAICRHLSLLASSPXXXXXXXXXXXXXXXXXXXXXXXXKGPLLASWSS--GGVGGETEAVGGGEEVELTMPELSRIGFEVEQLTTRAKALVEASLAGDAGKASPVKIEGMVASDGPGSNGVAGYEEFSSRNLSRAPDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQEKKRLSERLVKGEAEESGAASGXXXXXXXXXXXXXXXXXXXXXXXKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXXXQQKLSPQATAAGGSVSGKARLPPTARRSSADVVLCSLERLAEVDGG 1193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14890.3722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE6.360e-18985.50SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7FME7_ECTSI1.330e-17086.99Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14890contigEcto-sp13_S_contig14890:423..4063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1221
Hectar predicted targeting categoryother localisation
Exons6
Cds size1221
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14890.3722.1prot_Ecto-sp13_S_contig14890.3722.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14890 423..4063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462794.2664158-CDS-Ecto-sp13_S_contig14890:422..6981681462794.2664158-CDS-Ecto-sp13_S_contig14890:422..698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14890 423..698 -
1681462794.2759728-CDS-Ecto-sp13_S_contig14890:1237..14771681462794.2759728-CDS-Ecto-sp13_S_contig14890:1237..1477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14890 1238..1477 -
1681462794.2847576-CDS-Ecto-sp13_S_contig14890:1878..20101681462794.2847576-CDS-Ecto-sp13_S_contig14890:1878..2010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14890 1879..2010 -
1681462794.29723-CDS-Ecto-sp13_S_contig14890:2482..26521681462794.29723-CDS-Ecto-sp13_S_contig14890:2482..2652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14890 2483..2652 -
1681462794.3063824-CDS-Ecto-sp13_S_contig14890:3311..34321681462794.3063824-CDS-Ecto-sp13_S_contig14890:3311..3432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14890 3312..3432 -
1681462794.3156147-CDS-Ecto-sp13_S_contig14890:3781..40631681462794.3156147-CDS-Ecto-sp13_S_contig14890:3781..4063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14890 3782..4063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14890.3722.1

>prot_Ecto-sp13_S_contig14890.3722.1 ID=prot_Ecto-sp13_S_contig14890.3722.1|Name=mRNA_Ecto-sp13_S_contig14890.3722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=407bp
QGRPQARDGRVADAGVAICRHLSLLASSPPRPATAFAAAEKPLQNGLGGG
GGGKGPLLASCSSTSGGVGGEVEAVGGGEEVELTIPELSRIGFEVEQSTT
RAKTLVEAALAGDASKASLVKMEGMDALDGAGSNGAAGYNEFSSRNLSRA
PDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVA
MVAACRSVVETERTDIFLAQERKRLSEHFVKGEAEESGAASGASSAGGAG
SKSQGAAAKGGGTSAKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMAR
WHMELAQACPRLVIKVWEEWRSQEHHHLSATAVATAAASSSPPSSLQQKL
SPQATAAGGSVSVKARLPPKARRSSADVVLCSLERLAEVDGGVSADARLA
RSVRWSQ
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mRNA from alignment at Ecto-sp13_S_contig14890:423..4063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14890.3722.1 ID=mRNA_Ecto-sp13_S_contig14890.3722.1|Name=mRNA_Ecto-sp13_S_contig14890.3722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3641bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14890:423..4063- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGACGGCCGCAAGCTCGAGACGGACGTGTCGCCGACGCCGGTGTGGC
GATCTGCAGGCACCTCTCCCTCCTCGCCTCCTCCCCTCCCCGCCCTGCCA
CCGCCTTCGCTGCGGCGGAGAAACCCCTGCAGAACGGGCTGGGGGGCGGG
GGGGGCGGGAAGGGCCCGCTGTTGGCTTCTTGTTCTTCGACTTCTGGTGG
TGTTGGTGGTGAGGTGGAGGCGGTGGGTGGCGGGGAGGAGGTGGAGTTGA
CGATACCGGAGCTGAGCCGGATCGGGTTTGAGGTCAGTTGGGGGGGGAGA
GACAGCGGTTAGGCTGGCAAGACCGTTAAGGCTTTCAGATAAGCCAAAGG
ACAGACAGAGAGACAGGAGGGGGGCGGGCAGATGACAGGTAGTAGGATGA
CGGACAAATACAAAGGCTGACAGACGGACATCAAGGCCGACAGATAGACA
AGACGGGTAAGAGGACCGCCAGATTTTTTGAGATGACAGACAGACAGCAG
TAGACGGTCAGACATAGAGAACCCACAAGACAGAAAGATAGAAGGACAGA
CAGACCCATGATAACGCATGTAGTACGAAATTCGTTGCTCAATGGTCTAG
CTAAGGCATGCCACACGCGGCGCCCAATCAGGTGGAGCAGTCGACGACGA
GGGCGAAAACACTGGTGGAGGCGGCGCTAGCAGGGGACGCGAGCAAGGCG
TCCCTTGTGAAGATGGAAGGCATGGACGCCTTGGATGGCGCTGGCAGCAA
TGGTGAGGGCGTCGATGAGTCACATCAGTAATATTCCTGGTGGCACACGA
CTGATTATCTAGAGCTAGGTAACACGACAGAAGTTGACGGTGTGAACGGT
ACGGGGGTGACGGCACCGCCGCCGTATTCGGAGCTATCCTCGGATTTTGG
TCAGCTTGAAGAGTGCACGGAGTCGTATGGCGTGAGCGAGACAGCACATA
ATCTTCGCAAGACACAAATGGCTTTCCTCGCAACGCACGCCGCTCAACCA
GCCCGAAAGGCAGATATCAGAGAGATATTCTGTTCACGCTGCTGATTTAA
TGAGGAAAATAAATGCACGTTTAGAAGAGAGCACTCGCTTGATACATTCT
TTGTCCTGGTTTGGGAAGTGTGATCGTGCCGATGAGCACCCTTGTGCTTG
AATTTAACTGGCGTTCCAGTTTTCTCCGAATTCGACCGACCCATCTCCAC
TTTCTGCAAACTGCGTTCAGATTTATCGATACTTTCCCTTTTTTTACTTT
TCGCTACCGATGTGATAGGTGGTGCGCATATGTACCTCAATCCCACCGTC
TTTCACAACCTCCTGAAATGTTCGTCGCTACCAATGTACATGTCTCAATC
CCGCGGCTTTCTTCGTCACCCCCTGGATTTGTTCGATCTCTCGATTATGT
GACCCACGCAGGTGCGGCTGGGTACAACGAGTTCTCCTCCCGCAATCTAA
GCAGAGCACCAGACTCGTGGGGAATGGCCGTCCACCTGCTACCCCACCAG
GCGAAGGCTCTCTCTTGGATCAGGGCACTAGCTGGGCGTGGTCTGGGGGG
AGTTTTGTGTGACGACCGCGGCACAGGGAAGGTATTACTGCATGTACAGG
TTCAGAGTTTTTTGTTTCATGTTGTTCTTCTCACAAATGTACCCCGAAGT
CATCATCTCTCTGACAAGATAACAGATAAAAAGAGTCGGCGGTGGGCTTT
TGTCTTCTTTCGGGTTTCGTGCTGAATGGTATCAAATTCATAGCAGCTTC
AATTTTTTCTTGTCAAGTGTCTAACACATTTGTGTTCTCTACCCTGAGAG
TTGTCGGAACGTGACAGACGGAGACTGCGGCGGCGATCATGGCGATGGCG
CAGGTCTGACGTTGAAACAACCGTACCCGCTCTTGCCTCCCTTGGCTGGA
AAATTTCGGGCCTTGCTGTACGGTATGCTCCAAAACCGAACAGTAGAAAA
TACAATCGGTTTTTTTAGTGAATGCCCCCCCCCCCTTCCCAAAATAAACT
ACAACTTACACTCTCCTTCGTCGTTGTTGTTTTGATCGTGATTTGCGTGA
TAGACTGTGACTGCGGCGGCCACTGTGGCGATGGTGGCGGCTTGCCGGTC
GGTCGTGGAGACTGAGCGCACCGACATCTTCCTGGCTCAGGAGAGGAAGC
GCCTATCCGAGCACTTTGTCAAGGGGGAGGCTGAGGTGTGATTGATTGGT
GCCTTGCGGTTGTTTCCGCAGCAGTTGTTGATGGTTGTGTTGTCGTTGTT
GATGATGTTCGTCTTGTTGAAATGGTTGTTGTTGCTAGTGTTGCTGTCGC
CGTTGGTGTTGATGTTCTATCGCTGCTGCTGCTTGATGCTGCTGTTGCTG
TTGCTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTCTTGCT
GCTGTTGTATCATATGTGTTGTGTTGGGGAGGGTTCAAGGCTGGTGGAAG
GAGATTGAGCTGTCTGACAGCTTTAAGAAACCTCTCCTCCTTCCGCACCC
GCCGTTCTTCCCTGGCTCACACACCTTCCCCTCCATACCCCCTTCCTGGG
ACACTTCCTCCCCCCCTCCAAAAAACGCCTTTCCAGGAATCCGGGGCTGC
GTCGGGAGCATCCTCTGCCGGGGGTGCCGGTTCGAAATCGCAGGGTGCTG
CTGCCAAAGGCGGCGGAACTTCTGCGAAGGCGTCACCGCCGAGACAGGGG
ACGCTTGCGATGCGTCCCCGGCCGGGAAGCCTCGCGCCGCCCCCGCAGCT
GGTCGTGGTGCCCTCGTGGGCGATGGCGAGATGGCATATGGAGCTGGCGC
AGGCTTGCCCGCGCCTGGTAATCAAGGTGAGCGGCGTGCTGCCTTCGGTC
GTGGTTGTTGTTGTTGTTGTTGCCTGGCTCGGCCGTATCGGACGGTGTAC
ACAGGAAATGATGAGCATTAATAGAGGGGAATTTTTTGCTTCTCTTTTTT
GTTCTCTTTCTTTTTTTTTAATGGTTGAAGGACGGATAACTGCCTCAATG
CTTTACTTGTTGTTTTCGTTGGAGTTGTTATGCCTTGTTGTACGGTTTAC
AGTGTTTAACAGTAACCATTGCACATATATAATGAAAAGGGGTGCCGATT
CAATGTTAATGTTTTCTTTTTGTATTTTTTTTTGTTGTTGTGGGAAGGAC
ATATCCCCTTGAGAGAGGTTTCGCAGACCCCATCCCCCATCTGTTAGACA
GGATAGGGAGAATATGTTTGAACCACCTTTGTCAAAGTAGGGAGGAACGA
CTGGCCATCGGTGTGAAGGACACTGTGGGAACACCGCTCCATCCTGTCGA
GGACACGCTTTCTAGCAGCTGAGACATGCAAAACATGAGTGCGCCGCTCA
CTCCCCCCCCCCCAGGTGTGGGAGGAATGGAGGAGCCAGGAACACCATCA
TCTGTCTGCCACAGCAGTGGCAACAGCAGCGGCATCCTCGTCGCCGCCTT
CCTCCTTGCAGCAGAAGCTGTCGCCGCAGGCCACCGCCGCTGGCGGTAGC
GTTAGCGTTAAGGCACGGTTGCCGCCTAAGGCAAGGCGTTCCTCGGCGGA
CGTGGTTCTTTGCTCCCTCGAGCGCCTGGCGGAGGTGGACGGAGGGGTCT
CCGCGGACGCGCGTCTTGCGCGTTCGGTGCGGTGGAGCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14890:423..4063-

>mRNA_Ecto-sp13_S_contig14890.3722.1 ID=mRNA_Ecto-sp13_S_contig14890.3722.1|Name=mRNA_Ecto-sp13_S_contig14890.3722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14890:423..4063- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGACGGCCGCAAGCTCGAGACGGACGTGTCGCCGACGCCGGTGTGGC
GATCTGCAGGCACCTCTCCCTCCTCGCCTCCTCCCCTCCCCGCCCTGCCA
CCGCCTTCGCTGCGGCGGAGAAACCCCTGCAGAACGGGCTGGGGGGCGGG
GGGGGCGGGAAGGGCCCGCTGTTGGCTTCTTGTTCTTCGACTTCTGGTGG
TGTTGGTGGTGAGGTGGAGGCGGTGGGTGGCGGGGAGGAGGTGGAGTTGA
CGATACCGGAGCTGAGCCGGATCGGGTTTGAGGTGGAGCAGTCGACGACG
AGGGCGAAAACACTGGTGGAGGCGGCGCTAGCAGGGGACGCGAGCAAGGC
GTCCCTTGTGAAGATGGAAGGCATGGACGCCTTGGATGGCGCTGGCAGCA
ATGGTGCGGCTGGGTACAACGAGTTCTCCTCCCGCAATCTAAGCAGAGCA
CCAGACTCGTGGGGAATGGCCGTCCACCTGCTACCCCACCAGGCGAAGGC
TCTCTCTTGGATCAGGGCACTAGCTGGGCGTGGTCTGGGGGGAGTTTTGT
GTGACGACCGCGGCACAGGGAAGACTGTGACTGCGGCGGCCACTGTGGCG
ATGGTGGCGGCTTGCCGGTCGGTCGTGGAGACTGAGCGCACCGACATCTT
CCTGGCTCAGGAGAGGAAGCGCCTATCCGAGCACTTTGTCAAGGGGGAGG
CTGAGGAATCCGGGGCTGCGTCGGGAGCATCCTCTGCCGGGGGTGCCGGT
TCGAAATCGCAGGGTGCTGCTGCCAAAGGCGGCGGAACTTCTGCGAAGGC
GTCACCGCCGAGACAGGGGACGCTTGCGATGCGTCCCCGGCCGGGAAGCC
TCGCGCCGCCCCCGCAGCTGGTCGTGGTGCCCTCGTGGGCGATGGCGAGA
TGGCATATGGAGCTGGCGCAGGCTTGCCCGCGCCTGGTAATCAAGGTGTG
GGAGGAATGGAGGAGCCAGGAACACCATCATCTGTCTGCCACAGCAGTGG
CAACAGCAGCGGCATCCTCGTCGCCGCCTTCCTCCTTGCAGCAGAAGCTG
TCGCCGCAGGCCACCGCCGCTGGCGGTAGCGTTAGCGTTAAGGCACGGTT
GCCGCCTAAGGCAAGGCGTTCCTCGGCGGACGTGGTTCTTTGCTCCCTCG
AGCGCCTGGCGGAGGTGGACGGAGGGGTCTCCGCGGACGCGCGTCTTGCG
CGTTCGGTGCGGTGGAGCCAG
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