prot_Ecto-sp13_S_contig14887.3720.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14887.3720.1
Unique Nameprot_Ecto-sp13_S_contig14887.3720.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length55
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14887.3720.1 vs. uniprot
Match: D8LJ08_ECTSI (Carotenoid oxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ08_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.040e-27
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0 
Query:    1 MPSFDTQGVPEVFLQSIRKEPWRGALQPCVDHPLTEIEVTGKVPKTLEGTLFRNG 55
            MPSF+ QGVPEVFLQSIR+EPWRG LQPC+DHPLTEIEVTGKVPKTLEGTLFRNG
Sbjct:   56 MPSFEAQGVPEVFLQSIREEPWRGTLQPCIDHPLTEIEVTGKVPKTLEGTLFRNG 110
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BLAST of mRNA_Ecto-sp13_S_contig14887.3720.1 vs. uniprot
Match: A0A835YZV7_9STRA (Carotenoid oxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZV7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0 
Query:   10 PEVFLQSIRKEPWRGALQPCVDHPLTEI-EVTGKVPKTLEGTLFRNG 55
            P  F ++IR++PWRG L+P VDH L E+ ++ G +PK L+GTLFRNG
Sbjct:   36 PPRFREAIRQQPWRGGLEPAVDHELFEVTDIEGSIPKELQGTLFRNG 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14887.3720.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ08_ECTSI2.040e-2790.91Carotenoid oxygenase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YZV7_9STRA1.060e-955.32Carotenoid oxygenase n=1 Tax=Tribonema minus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14887contigEcto-sp13_S_contig14887:389..553 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14887.3720.1mRNA_Ecto-sp13_S_contig14887.3720.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14887 389..559 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14887.3720.1 ID=prot_Ecto-sp13_S_contig14887.3720.1|Name=mRNA_Ecto-sp13_S_contig14887.3720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MPSFDTQGVPEVFLQSIRKEPWRGALQPCVDHPLTEIEVTGKVPKTLEGT
LFRNG
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