mRNA_Ecto-sp13_S_contig14887.3720.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14887.3720.1
Unique NamemRNA_Ecto-sp13_S_contig14887.3720.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14887.3720.1 vs. uniprot
Match: D8LJ08_ECTSI (Carotenoid oxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ08_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.260e-28
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 VSMPSFDTQGVPEVFLQSIRKEPWRGALQPCVDHPLTEIEVTGKVPKTLEGTLFRNG 171
            VSMPSF+ QGVPEVFLQSIR+EPWRG LQPC+DHPLTEIEVTGKVPKTLEGTLFRNG
Sbjct:   54 VSMPSFEAQGVPEVFLQSIREEPWRGTLQPCIDHPLTEIEVTGKVPKTLEGTLFRNG 110
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14887.3720.1 vs. uniprot
Match: A0A835YZV7_9STRA (Carotenoid oxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZV7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.150e-9
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   34 PEVFLQSIRKEPWRGALQPCVDHPLTEI-EVTGKVPKTLEGTLFRNG 171
            P  F ++IR++PWRG L+P VDH L E+ ++ G +PK L+GTLFRNG
Sbjct:   36 PPRFREAIRQQPWRGGLEPAVDHELFEVTDIEGSIPKELQGTLFRNG 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14887.3720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ08_ECTSI1.260e-2891.23Carotenoid oxygenase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YZV7_9STRA1.150e-955.32Carotenoid oxygenase n=1 Tax=Tribonema minus TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14887contigEcto-sp13_S_contig14887:389..559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score112.5
Seed ortholog evalue6.5e-23
Seed eggNOG ortholog2880.D8LJ08
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGsCOG3670@1,KOG1285@2759
Cds size165
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462794.0062804-CDS-Ecto-sp13_S_contig14887:388..5531681462794.0062804-CDS-Ecto-sp13_S_contig14887:388..553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14887 389..553 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462794.02121-UTR-Ecto-sp13_S_contig14887:553..5591681462794.02121-UTR-Ecto-sp13_S_contig14887:553..559Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14887 554..559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14887.3720.1prot_Ecto-sp13_S_contig14887.3720.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14887 389..553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14887.3720.1

>prot_Ecto-sp13_S_contig14887.3720.1 ID=prot_Ecto-sp13_S_contig14887.3720.1|Name=mRNA_Ecto-sp13_S_contig14887.3720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MPSFDTQGVPEVFLQSIRKEPWRGALQPCVDHPLTEIEVTGKVPKTLEGT
LFRNG
back to top

mRNA from alignment at Ecto-sp13_S_contig14887:389..559-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14887.3720.1 ID=mRNA_Ecto-sp13_S_contig14887.3720.1|Name=mRNA_Ecto-sp13_S_contig14887.3720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14887:389..559- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCCATGCCCAGCTTCGATACGCAGGGAGTGCCTGAAGTGTTTCTACA
GTCGATCAGGAAGGAACCATGGCGTGGAGCCCTCCAGCCTTGCGTGGACC
ACCCCTTGACTGAGATCGAGGTGACGGGCAAGGTGCCCAAGACCCTGGAA
GGCACGCTTTTCCGCAACGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14887:389..559-

>mRNA_Ecto-sp13_S_contig14887.3720.1 ID=mRNA_Ecto-sp13_S_contig14887.3720.1|Name=mRNA_Ecto-sp13_S_contig14887.3720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14887:389..559- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCAGCTTCGATACGCAGGGAGTGCCTGAAGTGTTTCTACAGTCGAT
CAGGAAGGAACCATGGCGTGGAGCCCTCCAGCCTTGCGTGGACCACCCCT
TGACTGAGATCGAGGTGACGGGCAAGGTGCCCAAGACCCTGGAAGGCACG
CTTTTCCGCAACGGC
back to top