mRNA_Ecto-sp13_S_contig14881.3717.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14881.3717.1
Unique NamemRNA_Ecto-sp13_S_contig14881.3717.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14881.3717.1 vs. uniprot
Match: A0A6H5L5X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X5_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.790e-31
Identity = 121/150 (80.67%), Postives = 124/150 (82.67%), Query Frame = -1 
Query:  142 RDAAGTIKLSTGEVSTSSTVQTAATEALSPQSVHEGTPPRAEEELEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------PALSGVKAAVAAINSSGNSAKPREKEVGRHPFTAAGLVGSKTTNME 567
            RDAAGT+KLS GEVSTSSTVQTAATEALSPQSV EGTPPRAEEE+EA XXXXXXXXXXXXX             XXXXXXXXXXXXXXXXXXXXXX        PALS VKAAVAAINSSG+SAKPREKEVGRHPF AAGLVGSKTTNME
Sbjct:  506 RDAAGTMKLSAGEVSTSSTVQTAATEALSPQSVDEGTPPRAEEEIEAAXXXXXXXXXXXXXAFVAGLKEDGLTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPALSVVKAAVAAINSSGDSAKPREKEVGRHPFMAAGLVGSKTTNME 655
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BLAST of mRNA_Ecto-sp13_S_contig14881.3717.1 vs. uniprot
Match: D7FZQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ2_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.150e-15
Identity = 75/148 (50.68%), Postives = 79/148 (53.38%), Query Frame = -1 
Query:  142 AAGTIKLSTGEVSTSSTVQTAATEALSPQSVHEGTPPRAEEELEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------PALSGVKAAVAAINSSGNSAKPREKEVGRHPFTAAGLVGSKTTNME 561
            AAG +KLSTGE                  S+HEG+PPRAEEELEA                                      XXXXXXXXXXX        PALSGVKAAVAAIN SG SA+PREKEVGRHPF AAGLV SKTTNME
Sbjct:  296 AAGMMKLSTGE------------------SIHEGSPPRAEEELEAVAMESAAATAGGGKAFVAGLKDNGLTGDEKKDVGASGAXXXXXXXXXXXXXXXXXXAPALSGVKAAVAAINISGYSAEPREKEVGRHPFMAAGLVESKTTNME 425
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14881.3717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5X5_9PHAE2.790e-3180.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZQ2_ECTSI1.150e-1550.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14881contigEcto-sp13_S_contig14881:1281..1868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size588
Hectar predicted targeting categoryother localisation
Exons1
Cds size561
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462793.8777783-UTR-Ecto-sp13_S_contig14881:1280..13071681462793.8777783-UTR-Ecto-sp13_S_contig14881:1280..1307Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14881 1281..1307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462793.8899498-CDS-Ecto-sp13_S_contig14881:1307..18681681462793.8899498-CDS-Ecto-sp13_S_contig14881:1307..1868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14881 1308..1868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14881.3717.1prot_Ecto-sp13_S_contig14881.3717.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14881 1308..1868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14881.3717.1

>prot_Ecto-sp13_S_contig14881.3717.1 ID=prot_Ecto-sp13_S_contig14881.3717.1|Name=mRNA_Ecto-sp13_S_contig14881.3717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
MFYRSAAHNATATATATTAESRSGLPGGGVSSTRRLSLLHVGGLGPHQPR
RRERVAADLLLPGLRGVAAAVDRRHGRLHAGESGSGGGTAATVAGSAARP
DLLLLAAGQAVLLEPRHERLAAAGGGGGTFHRRRLELLLRPRRGPLVDGL
RRQRLGRSRLHGAGGAHLAGAKLNRPRGVPGGQRRR*
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mRNA from alignment at Ecto-sp13_S_contig14881:1281..1868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14881.3717.1 ID=mRNA_Ecto-sp13_S_contig14881.3717.1|Name=mRNA_Ecto-sp13_S_contig14881.3717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14881:1281..1868+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCGCCCCGCCCAACAAAACGGCGGTATGTTCTACCGGAGCGCAGCACA
CAACGCTACTGCCACTGCCACCGCCACAACAGCAGAATCTAGGTCCGGCC
TCCCAGGGGGGGGGGTCTCCAGCACCCGTCGCCTCTCACTACTCCATGTT
GGTGGTCTTGGACCCCACCAGCCCCGCCGCCGTGAAAGGGTGGCGGCCGA
CCTCCTTCTCCCGGGGCTTCGCGGAGTTGCCGCTGCTGTTGATCGCCGCC
ACGGCCGCCTTCACGCCGGAGAGAGCGGGAGCGGCGGCGGCACCGCCGCC
ACCGTTGCTGGCAGCGCCGCTCGCCCCGACCTCCTCCTTCTCGCCGCCGG
TCAGGCCGTCCTCCTCGAGCCCCGCCATGAACGCCTTGCCGCCGCCGGCG
GTGGCGGCGGCACTTTCCATCGCCGCCGCCTCGAGCTCCTCCTCCGCCCG
CGGCGGGGTCCCCTCGTGGACGGACTGCGGCGACAGCGCCTCGGTCGCAG
CCGTCTGCACGGTGCTGGAGGTGCTCACCTCGCCGGTGCTAAGCTTAATC
GTCCCCGCGGCGTCCCGGGGGGACAGCGGCGCCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14881:1281..1868+

>mRNA_Ecto-sp13_S_contig14881.3717.1 ID=mRNA_Ecto-sp13_S_contig14881.3717.1|Name=mRNA_Ecto-sp13_S_contig14881.3717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14881:1281..1868+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCTACCGGAGCGCAGCACACAACGCTACTGCCACTGCCACCGCCAC
AACAGCAGAATCTAGGTCCGGCCTCCCAGGGGGGGGGGTCTCCAGCACCC
GTCGCCTCTCACTACTCCATGTTGGTGGTCTTGGACCCCACCAGCCCCGC
CGCCGTGAAAGGGTGGCGGCCGACCTCCTTCTCCCGGGGCTTCGCGGAGT
TGCCGCTGCTGTTGATCGCCGCCACGGCCGCCTTCACGCCGGAGAGAGCG
GGAGCGGCGGCGGCACCGCCGCCACCGTTGCTGGCAGCGCCGCTCGCCCC
GACCTCCTCCTTCTCGCCGCCGGTCAGGCCGTCCTCCTCGAGCCCCGCCA
TGAACGCCTTGCCGCCGCCGGCGGTGGCGGCGGCACTTTCCATCGCCGCC
GCCTCGAGCTCCTCCTCCGCCCGCGGCGGGGTCCCCTCGTGGACGGACTG
CGGCGACAGCGCCTCGGTCGCAGCCGTCTGCACGGTGCTGGAGGTGCTCA
CCTCGCCGGTGCTAAGCTTAATCGTCCCCGCGGCGTCCCGGGGGGACAGC
GGCGCCGGTGA
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