mRNA_Ecto-sp13_S_contig10380.370.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: A0A6H5L7F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F3_9PHAE) HSP 1 Score: 171 bits (432), Expect = 1.680e-46 Identity = 92/103 (89.32%), Postives = 94/103 (91.26%), Query Frame = 1
Query: 370 MSENGGSPAGEVVAAASGTGNEEQPATSRQDGGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEAGIAEPTSSSSK 678
MSENGGSPAGEVVAAAS TGNE QP T DGGRVLLRKSCDLCVRLKRACDG++PC LCLRRRETCTRSVKRKSGPAKGTKYTTRR RMEAGIAEP SSSSK
Sbjct: 1 MSENGGSPAGEVVAAASDTGNEGQPTT---DGGRVLLRKSCDLCVRLKRACDGQSPCQLCLRRRETCTRSVKRKSGPAKGTKYTTRRVRMEAGIAEPASSSSK 100
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: D8LPZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ9_ECTSI) HSP 1 Score: 138 bits (348), Expect = 7.650e-34 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1
Query: 451 SRQDGGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEAGIAEP 660
S+QD GRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEAGIAEP
Sbjct: 53 SQQDDGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEAGIAEP 122
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: A0A6H5L009_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L009_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.690e-16 Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 472 VLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSR 636
V LRKSCD CVRLKRACDGKNPC LC RR + CTRS ++KSGPAKGTKY RR R
Sbjct: 8 VELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKR 62
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: D7FPF9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF9_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 1.690e-16 Identity = 44/62 (70.97%), Postives = 49/62 (79.03%), Query Frame = 1
Query: 451 SRQDGGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSR 636
SR+D + LRKSCD CVRLKRACDGKNPC LC RR + CTRS ++KSGPAKGTKY RR R
Sbjct: 10 SRRDP-TIELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKR 70
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: D8LKM5_ECTSI (Zinc finger transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM5_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 7.470e-12 Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 454 RQDGGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSR 636
+ D LRKSCD CVR+KR C G PC LC RR + C RS+K++SGPAKGTKY R+ R
Sbjct: 15 KMDQEHQALRKSCDYCVRMKRGCSGGTPCALCNRRNKNCIRSIKKRSGPAKGTKYCKRKPR 75
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: A0A835Z8Y1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y1_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 5.240e-9 Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 478 LRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTT 624
LR+SC+LCV+LKR C G +PC LC+R+ C R+ KR SGPAKGT+Y T
Sbjct: 412 LRRSCNLCVQLKRKCSGDSPCTLCVRKGIECVRAFKRPSGPAKGTRYVT 460
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: A0A836CI83_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI83_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.530e-7 Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 427 GNEEQPATSRQDGGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKY 618
G E+Q T R LR+SC+LCV LKR C G PC LC R+ + C R+ KR SGP KG +Y
Sbjct: 39 GAEQQLPTGRAP----QLRRSCNLCVSLKRKCSGDQPCTLCARKGKECIRTFKRPSGPQKGMRY 98
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 3.670e-7 Identity = 39/87 (44.83%), Postives = 45/87 (51.72%), Query Frame = 1
Query: 376 ENGGSPAGEVVAAA----SGTGNEEQPATSRQDGGR---VLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTK 615
E G PAG V A SG G P R V+LR +CD C R+KR CDG PC+ C RR C S K+KSGP KG+K
Sbjct: 142 EQPGLPAGAVPPGAPGDWSGIGRTMTPGRGDVTNDRDTMVVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSK 228
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 1.540e-6 Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query: 472 VLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTK 615
V+LR +CD C R+KR CDG PC+ C RR C S K+KSGP KG+K
Sbjct: 205 VVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSK 252 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10380.370.1 >prot_Ecto-sp13_S_contig10380.370.1 ID=prot_Ecto-sp13_S_contig10380.370.1|Name=mRNA_Ecto-sp13_S_contig10380.370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp MSENGGSPAGEVVAAASGTGNEEQPATSRQDGGRVLLRKSCDLCVRLKRAback to top mRNA from alignment at Ecto-sp13_S_contig10380:723..4933- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10380.370.1 ID=mRNA_Ecto-sp13_S_contig10380.370.1|Name=mRNA_Ecto-sp13_S_contig10380.370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4211bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10380:723..4933- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10380:723..4933- >mRNA_Ecto-sp13_S_contig10380.370.1 ID=mRNA_Ecto-sp13_S_contig10380.370.1|Name=mRNA_Ecto-sp13_S_contig10380.370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10380:723..4933- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |