mRNA_Ecto-sp13_S_contig10380.370.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10380.370.1
Unique NamemRNA_Ecto-sp13_S_contig10380.370.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: A0A6H5L7F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F3_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.680e-46
Identity = 92/103 (89.32%), Postives = 94/103 (91.26%), Query Frame = 1
Query:  370 MSENGGSPAGEVVAAASGTGNEEQPATSRQDGGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEAGIAEPTSSSSK 678
            MSENGGSPAGEVVAAAS TGNE QP T   DGGRVLLRKSCDLCVRLKRACDG++PC LCLRRRETCTRSVKRKSGPAKGTKYTTRR RMEAGIAEP SSSSK
Sbjct:    1 MSENGGSPAGEVVAAASDTGNEGQPTT---DGGRVLLRKSCDLCVRLKRACDGQSPCQLCLRRRETCTRSVKRKSGPAKGTKYTTRRVRMEAGIAEPASSSSK 100          
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: D8LPZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ9_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 7.650e-34
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1
Query:  451 SRQDGGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEAGIAEP 660
            S+QD GRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEAGIAEP
Sbjct:   53 SQQDDGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEAGIAEP 122          
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: A0A6H5L009_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L009_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.690e-16
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  472 VLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSR 636
            V LRKSCD CVRLKRACDGKNPC LC RR + CTRS ++KSGPAKGTKY  RR R
Sbjct:    8 VELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKR 62          
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: D7FPF9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.690e-16
Identity = 44/62 (70.97%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  451 SRQDGGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSR 636
            SR+D   + LRKSCD CVRLKRACDGKNPC LC RR + CTRS ++KSGPAKGTKY  RR R
Sbjct:   10 SRRDP-TIELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKR 70          
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: D8LKM5_ECTSI (Zinc finger transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 7.470e-12
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  454 RQDGGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSR 636
            + D     LRKSCD CVR+KR C G  PC LC RR + C RS+K++SGPAKGTKY  R+ R
Sbjct:   15 KMDQEHQALRKSCDYCVRMKRGCSGGTPCALCNRRNKNCIRSIKKRSGPAKGTKYCKRKPR 75          
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: A0A835Z8Y1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.240e-9
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  478 LRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTT 624
            LR+SC+LCV+LKR C G +PC LC+R+   C R+ KR SGPAKGT+Y T
Sbjct:  412 LRRSCNLCVQLKRKCSGDSPCTLCVRKGIECVRAFKRPSGPAKGTRYVT 460          
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: A0A836CI83_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI83_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.530e-7
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1
Query:  427 GNEEQPATSRQDGGRVLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKY 618
            G E+Q  T R       LR+SC+LCV LKR C G  PC LC R+ + C R+ KR SGP KG +Y
Sbjct:   39 GAEQQLPTGRAP----QLRRSCNLCVSLKRKCSGDQPCTLCARKGKECIRTFKRPSGPQKGMRY 98          
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.670e-7
Identity = 39/87 (44.83%), Postives = 45/87 (51.72%), Query Frame = 1
Query:  376 ENGGSPAGEVVAAA----SGTGNEEQPATSRQDGGR---VLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTK 615
            E  G PAG V   A    SG G    P        R   V+LR +CD C R+KR CDG  PC+ C RR   C  S K+KSGP KG+K
Sbjct:  142 EQPGLPAGAVPPGAPGDWSGIGRTMTPGRGDVTNDRDTMVVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSK 228          
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.540e-6
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:  472 VLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTK 615
            V+LR +CD C R+KR CDG  PC+ C RR   C  S K+KSGP KG+K
Sbjct:  205 VVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSK 252          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10380.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L7F3_9PHAE1.680e-4689.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPZ9_ECTSI7.650e-3497.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L009_9PHAE1.690e-1676.36Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FPF9_ECTSI1.690e-1670.97Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LKM5_ECTSI7.470e-1257.38Zinc finger transcriptional regulator n=1 Tax=Ecto... [more]
A0A835Z8Y1_9STRA5.240e-961.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CI83_9STRA2.530e-750.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JM19_9PHAE3.670e-744.83Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LM00_ECTSI1.540e-656.25Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10380contigEcto-sp13_S_contig10380:723..4933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size714
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-15_001500.2
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462527.362135-CDS-Ecto-sp13_S_contig10380:722..8791681462527.362135-CDS-Ecto-sp13_S_contig10380:722..879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10380 723..879 -
1681462527.3745334-CDS-Ecto-sp13_S_contig10380:1573..16801681462527.3745334-CDS-Ecto-sp13_S_contig10380:1573..1680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10380 1574..1680 -
1681462527.3827932-CDS-Ecto-sp13_S_contig10380:4483..45641681462527.3827932-CDS-Ecto-sp13_S_contig10380:4483..4564Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10380 4484..4564 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462527.391166-UTR-Ecto-sp13_S_contig10380:4564..49331681462527.391166-UTR-Ecto-sp13_S_contig10380:4564..4933Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10380 4565..4933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10380.370.1prot_Ecto-sp13_S_contig10380.370.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10380 723..4564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10380.370.1

>prot_Ecto-sp13_S_contig10380.370.1 ID=prot_Ecto-sp13_S_contig10380.370.1|Name=mRNA_Ecto-sp13_S_contig10380.370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MSENGGSPAGEVVAAASGTGNEEQPATSRQDGGRVLLRKSCDLCVRLKRA
CDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEAGIAEPTSS
SSKSGKAKTPRVSQA
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mRNA from alignment at Ecto-sp13_S_contig10380:723..4933-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10380.370.1 ID=mRNA_Ecto-sp13_S_contig10380.370.1|Name=mRNA_Ecto-sp13_S_contig10380.370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4211bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10380:723..4933- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAGCTGCTGGCTGGGACCAAACCATCAAGTCCTGCACGAAGAGCTGCC GCTGCGGCTGCTGCTGCTGCTGCGGCTGCGGCTGAGTTTATTTTTGCACC ACGGCACGTTTTTGCTCTCCCACCGCCCCTGCGCTGCCATCGTTTGTCGC TGCGTCCATACGCCTGGTGCTGTTGGTAATGCTCACGGATCTCTACATTT TGTCCGGACTTTTCTCTGCTTGCTCTGTGGCCTATGCCAGCAGCTAGACG GCGGCAACGACGAAAGCTGAGTTTTTCTTCAGTCACCACAACCACGCCAC CTGTCTCAAAGCCCGCGATAGGCCACGGGGACACTGGACGGCCGCTATCA ATTGGCAGCTCTAACCAGCATGAGCGAAAACGGGGGGAGCCCGGCGGGAG AGGTGGTTGCCGCTGCTTCCGGCACGGGGAATGAGGAGCAACCAGCAACG GTGTGTGTCCGTCTTTCTTTGTACTCATGTGGAAGATAGCATCACACACA CTCGGTTGTTTCTCAAAGATGTGCCGCTGCATTTGGGGGGGGTGCGCATC GGATGGGTTTTATAGCCCGAAGGCTGCTGCAGACGGGACAACGACAGAGT TAGCAGAAGTCGTCCAAGACTGATAATGTAGGTGAGAAGAGAGGGAATCG GAGCAATAAACTTTCTCCGCACACGTTAGGGACATGTGACCCTTTATTCA GCGTCATCTCCGCATGAACTTGGACTTGAACCTGAAAAATCAAAACGGAC AAGATTTTTTGTTTCTCTGTCCGCCCGGCGGCCGTCGTCAGTACGCACGC CATACACCAAAAAATGCTCCTTGTAAAAACGTCTGGGGATCGATCTGCTT TTTGCCACCCCCTCCCGTCTATCAACCAAGTACCCGGCGAGGGTTTGATA CATGAGTCCGCTGATACTGCTGCTGTAGCCATAGACATCTCTGCTGCCCT TGTGCGTGACACGCTCAACAATCGATAGCGTCAGTTCGTCGTCCTTGCCC GCATGGTGTTGTGGCTGGACCTCCCACCCCCGCATTCGAATGGACGTAAC AAGTTACAATCGGCGCGCCATTGCTGCTGCTGCTGTGCGCGTGGCCCGCC GCTGTGTGCTGCCTCTACTCCCGTGGGTAAATCATAGTTGGTCTGTCGGT GGCGGCGGCGATGTATCTTTCACCGCTGCTGCTGCCGAGCGGCATCGCGT ATGTAGCTCCACCACCATCGCCAAACAGCGTCCCCAATGTGTCTCGGCGC GTTATCCCCCCGAAGCCACCCCTGGTTGTTGGATCCTCCTTCGCAGCCAA TTTTCAATGGAAAGAAATTTTAGTTCCGTATCCTTGTGGCACATCGCAGG TAGATAGGTAGATCCCTAAACGCACACATACAAACCGTTTTGTCTTCAGC CGGGGGCCTTGAGCGTCACCCCCCTGTGGCCTCGGGACTATTCTTGAGCC GTGATGAAGCTGCCCTGCCGTTACTAACAACAGCAAGGCACGTAAATATG CAGCACTTGGAAAAACAGATGACCATACATATATCTATGTACCAGGTATA CGCACCTGAAAAGCTACATCGGAAAAGTTTGCCGCTCCCCATGTACCGCT GCTCTAGCGGTTGACGGCTAGCGTGCGTAATATTTCTCAGGGTACGCCCA CACCACACCTCATTAGATGGACTTCGCGATCTCGCCACCCCCCCCCCACC CCACTTCGCCGTCTCGGTGGTGTTGATACTGTTGAGTTTTTGCTCGAGCG CGGCCACGCTTGTCGACTCGATTTTGTACCCGCCCCCCCCCCAACAAAGA CGTGCCCGTAAACGCCATAATAATATCAGTACGACACACATGTTGCTGTT TTGCATGTTTCGGTGAGGCGGAGAGATGCCCCCCCCCCTACATGATTTTC GAAGCTCGATTTGCTCCACAGCAGTCAACCTTGGCCAACACTGAAAATGG CGGTTTCGGAACCATCTAGTCGAGGGGTTTTCCGCAATCGAACCACTGCT GTACTGCTGTGAGGGTCGCTCTACGGAGGTTGCCATCTCCCCACCTCTTC CGGTAGTCACACACAGAAAGGTTCTGTTACAGCAGTAGTAAGGCCTAGCA GCGTCGAGAGCTGCTTGTGTTTAGAAGTCCCATTTACAGTAGTGTAGTGG GCCCTCAAGAACGCCGGGGTTGAACAACGCCGGTGGCCCTATGTCTGGCG CCAGTGCAATTTGCTTGGCACAGACTGAATCATCGTGTACTGCTGTAGTT TGAAAAGCGCCGAGCCCCTTGAAGATGGCGTCGGTCGATTCGCCGGGCAA ATACCGGGGTTGTCGAGGGCCGACCTCCGCCTTATTGTATCACTCCCTTC GAAGTCGCCCATCACATGACGTGGCGTCCCATACCCCGAATGTTGTCGGT CGTGCCCGCATTTTTTGTGTAGAGGCTTTTGTGTCGATCTCGTCTACGAC GAAACCTAGTGTGTGTCCTGGTCGGAAATAAATAGAGCCGTTTTCTGACG CCAACCTTTGCTGTAACCTCTATGTACCTACACGTGATTTTTGCAGCTAT GTAGCTTGCTGTCGACCGCTCCGGGTTCGTCGATGCGAAGCGGTGTGCGA CGTAGAGCCAGACGTGCGCAAAATACGTGCCTTGTCTCCCCGTTTGTGTG TTTGTGTGTTCGTGTGCGTTTAGGTTCGCGGTAAAAGTTGCTGCAACGCC ACATCACCAACAACAACGAAAAAATCCATGCCTTACGGTTGAAGGAAAAG AGATCGGCGTTTCACTTACCAACACCGCCGACTGAGGGTTGTGTTGGAGA CGAAATGGGGGGGGGAGAGGTGTGCAAGATAACGGTATCGGCGTAGAATC GGGGGAGGCTACGTAAACTAAACAGGTCGCAGGTAATACCGTCCACCTGT AAGTGGCGAGGGTGACATCCCCTGGAAGAGCTTGTGTGGAATTATGCCGG GAGGTAAGGATAGGTTGAACGCACGCTCCCAAGACGTGGTATATTGTAGT CTCCCTGTATCATCCCACTCCCAACTTGAGGTTTTTTTACTCATGTCTCG TCCTGCCCCCCTCCCTCTGTCCCTCCCTCCCTCTGTGGGTGTGCCTTTAA TCCGCCTTTCTTGCGTTCTTTCTGTGTTTGGCCGACATTACACGACTGCC CTCCGTCGTGTGTGGTTCCTTGTGGCTTGTGTTCAACTCGCTCGGCCGGG GGGGTTGTACACCAACAACCAACGACCACAACAACGACAATCATGACGAG CAGAGCCGACAGGATGGCGGCAGGGTCCTGTTGCGCAAGAGCTGCGACCT CTGCGTGCGGCTGAAGCGCGCGTGCGACGGTAAAAACCCGTGCCACCTCT GTCTTCGACGGTGAGGGCCGCGCTATGAAAAGGCTGCTGCTGTACAAACG AATAGTTGGCGATTTTTTCTTTTTGATTCGTTCAGGTTCCCTAGGCTCGT CCGAGTAAAGAAAATCGAAGTCGGCTTGTTTGCTCGAGCTTCGGAAACGT CGCTGATGGCAGCTGGCGGTTGATTCACACCAACGCATGCTTTGAACTTC ATCGTGCCTTGATGACAGTACTACCGATAAGCCCACGCAGAGGGCGCTTC TTGTAGGATTATTTGGATGAATTGTCGAGATCCTCCTCATGTAGGGTACG GCGTCTGTCGAGAAAAATTTCCACCCCGACGGTGAGAGCTGCGCGATAAA AAAGATGCGCGGGATGCAAGAGGACAAATCTCTCACAACGCCTGGCGAGG TGTCGAGATTCGTAGCATGTGGGCGGGTAACGCAGCCGAAGCACAACTCT GCTGCTGTTCATGGTACAGCCCACAGCAGTAGTACGGCGATGTATGCTGG CGTCTCTCCTGCCCGGACGGTACCCATCAGCGAAGCATTTCCTTTGGACG CTTCATACCCTTATGCACAGCCCTTCTTCCCTGTCCCGCCCCTTGACAAT TCATTCCTGTATCCCCGCCAATGCTTTCCTTGCCGCCCTATGCCGAGTGG TACCCTTGACATCTCACACCCGTGCCCCCCCCCCCCGCCCCTTGTTGTTC CCAGCCGCGAGACGTGCACACGGAGCGTGAAGCGGAAAAGCGGCCCCGCG AAGGGTACCAAGTACACCACCCGGCGCTCTCGGATGGAAGCAGGCATCGC GGAGCCTACCAGCAGCAGCAGCAAGAGCGGCAAGGCGAAAACGCCGCGCG TTAGTCAGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10380:723..4933-

>mRNA_Ecto-sp13_S_contig10380.370.1 ID=mRNA_Ecto-sp13_S_contig10380.370.1|Name=mRNA_Ecto-sp13_S_contig10380.370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10380:723..4933- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGAAAACGGGGGGAGCCCGGCGGGAGAGGTGGTTGCCGCTGCTTC
CGGCACGGGGAATGAGGAGCAACCAGCAACGAGCCGACAGGATGGCGGCA
GGGTCCTGTTGCGCAAGAGCTGCGACCTCTGCGTGCGGCTGAAGCGCGCG
TGCGACGGTAAAAACCCGTGCCACCTCTGTCTTCGACGCCGCGAGACGTG
CACACGGAGCGTGAAGCGGAAAAGCGGCCCCGCGAAGGGTACCAAGTACA
CCACCCGGCGCTCTCGGATGGAAGCAGGCATCGCGGAGCCTACCAGCAGC
AGCAGCAAGAGCGGCAAGGCGAAAACGCCGCGCGTTAGTCAGGCC
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