mRNA_Ecto-sp13_S_contig14839.3689.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14839.3689.1
Unique NamemRNA_Ecto-sp13_S_contig14839.3689.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14839.3689.1 vs. uniprot
Match: D7FXM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM6_ECTSI)

HSP 1 Score: 486 bits (1251), Expect = 2.800e-161
Identity = 255/287 (88.85%), Postives = 270/287 (94.08%), Query Frame = 1 
Query:    1 MSENQQQGSGTAAVGCEHDDWKDFSCVTKWEHFINDVAGAAAAATTQRRSNKKLTSYDGRSYCLRRLIAGSDNSXXXXXXXXXSKVRTTAGSAATAGDESNISEFPEIASFFGEEECSLDAWLAPEPSSSSATVSSREKEADKREFLEDMEAWHLLRSWFGFGDLLCLHEAATNPASSSRSGDGTGAVLSLEQLLSTGVMAMEDRRCGAVLAVQQQPGGDGDGRRGRGSRDSASRRGVSIKGYAILSPTGHADWTRRAETVRLESEASSVVPRSRLSLEALGELLTD 861
            MSENQQQGS TAAV CEHDDWKDFSCVTKWE+FINDVAGAAAA TTQRRSNK+LTSYDGRSYCLR LIAG ++  XXXXXXXXSK R TAG AATAGDE +IS FP++ASFFGEEECSLDAWLAPEPSSS+AT+SSRE+EAD+REFLED+EAWHLLRSWFGFGDLLCLHEAAT PASSSRSGDG G  LSLEQLLSTGVMAMEDRRCGAVLA+QQQPGGDG+GRRGRGSRDSASRRGVS+KGYA LSPTGHADWTRRAETVRLESEASSVVPRSRLSLEALGELLTD
Sbjct:    1 MSENQQQGSRTAAVSCEHDDWKDFSCVTKWEYFINDVAGAAAAITTQRRSNKQLTSYDGRSYCLRSLIAGPNSDNXXXXXXXXSKARMTAGGAATAGDEGDISAFPDLASFFGEEECSLDAWLAPEPSSSAATMSSREEEADEREFLEDVEAWHLLRSWFGFGDLLCLHEAATKPASSSRSGDGAGTGLSLEQLLSTGVMAMEDRRCGAVLAMQQQPGGDGNGRRGRGSRDSASRRGVSVKGYATLSPTGHADWTRRAETVRLESEASSVVPRSRLSLEALGELLTD 287
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BLAST of mRNA_Ecto-sp13_S_contig14839.3689.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 479 bits (1233), Expect = 8.560e-154
Identity = 254/287 (88.50%), Postives = 268/287 (93.38%), Query Frame = 1 
Query:    1 MSENQQQGSGTAAVGCEHDDWKDFSCVTKWEHFINDVAGAAAAATTQRRSNKKLTSYDGRSYCLRRLIAGSDNSXXXXXXXXXSKVRTTAGSAATAGDESNISEFPEIASFFGEEECSLDAWLAPEPSSSSATVSSREKEADKREFLEDMEAWHLLRSWFGFGDLLCLHEAATNPASSSRSGDGTGAVLSLEQLLSTGVMAMEDRRCGAVLAVQQQPGGDGDGRRGRGSRDSASRRGVSIKGYAILSPTGHADWTRRAETVRLESEASSVVPRSRLSLEALGELLTD 861
            MSENQQQGS TAAVGCEHDDWKDFSCVTKWE+FINDVAGAAAA TTQRRS KKLTSYDGRSYCLRRLIAG ++  XXXXXXXX + R +AG AATAGDE +ISEFP++ASFFGEEECSLDAWLAPEPSSSSAT+SSRE+EAD+REFLEDM AWHLLRSWFGFGDLLCLHEAATNPASSSRSGDG G VLSLEQLLSTGVMAMEDRRCGAVLA+QQQPGGDGDGRRGR SRDSASRRGVS+KGYA LSP GHADWTRRAETV LESEASS +PRSRLSLEALGELLTD
Sbjct:    1 MSENQQQGSRTAAVGCEHDDWKDFSCVTKWEYFINDVAGAAAA-TTQRRSTKKLTSYDGRSYCLRRLIAGPNSDNXXXXXXXXXEARISAGGAATAGDEGDISEFPDLASFFGEEECSLDAWLAPEPSSSSATMSSREEEADEREFLEDMGAWHLLRSWFGFGDLLCLHEAATNPASSSRSGDGAGTVLSLEQLLSTGVMAMEDRRCGAVLAMQQQPGGDGDGRRGRCSRDSASRRGVSVKGYATLSPIGHADWTRRAETVCLESEASSAIPRSRLSLEALGELLTD 286
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14839.3689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXM6_ECTSI2.800e-16188.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3A9_9PHAE8.560e-15488.50Rab3 GTPase-activating protein catalytic subunit n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14839contigEcto-sp13_S_contig14839:1012..4116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size861
Hectar predicted targeting categoryother localisation
Exons5
Cds size861
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462791.8672645-CDS-Ecto-sp13_S_contig14839:1011..11811681462791.8672645-CDS-Ecto-sp13_S_contig14839:1011..1181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14839 1012..1181 -
1681462791.8783374-CDS-Ecto-sp13_S_contig14839:1612..17501681462791.8783374-CDS-Ecto-sp13_S_contig14839:1612..1750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14839 1613..1750 -
1681462791.8876522-CDS-Ecto-sp13_S_contig14839:2041..21181681462791.8876522-CDS-Ecto-sp13_S_contig14839:2041..2118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14839 2042..2118 -
1681462791.8969684-CDS-Ecto-sp13_S_contig14839:2814..30351681462791.8969684-CDS-Ecto-sp13_S_contig14839:2814..3035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14839 2815..3035 -
1681462791.9064896-CDS-Ecto-sp13_S_contig14839:3861..41161681462791.9064896-CDS-Ecto-sp13_S_contig14839:3861..4116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14839 3862..4116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14839.3689.1prot_Ecto-sp13_S_contig14839.3689.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14839 1012..4116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14839.3689.1

>prot_Ecto-sp13_S_contig14839.3689.1 ID=prot_Ecto-sp13_S_contig14839.3689.1|Name=mRNA_Ecto-sp13_S_contig14839.3689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=287bp
MSENQQQGSGTAAVGCEHDDWKDFSCVTKWEHFINDVAGAAAAATTQRRS
NKKLTSYDGRSYCLRRLIAGSDNSNNSNSNDNNSKVRTTAGSAATAGDES
NISEFPEIASFFGEEECSLDAWLAPEPSSSSATVSSREKEADKREFLEDM
EAWHLLRSWFGFGDLLCLHEAATNPASSSRSGDGTGAVLSLEQLLSTGVM
AMEDRRCGAVLAVQQQPGGDGDGRRGRGSRDSASRRGVSIKGYAILSPTG
HADWTRRAETVRLESEASSVVPRSRLSLEALGELLTD
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mRNA from alignment at Ecto-sp13_S_contig14839:1012..4116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14839.3689.1 ID=mRNA_Ecto-sp13_S_contig14839.3689.1|Name=mRNA_Ecto-sp13_S_contig14839.3689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14839:1012..4116- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGAGAATCAGCAACAGGGCTCCGGCACAGCTGCTGTCGGCTGCGA
GCACGACGACTGGAAGGATTTCTCGTGCGTCACAAAGTGGGAGCACTTTA
TCAACGACGTTGCGGGAGCAGCAGCAGCAGCAACAACGCAGAGGCGGAGC
AACAAGAAGCTCACTTCATATGACGGGCGCTCATACTGTTTGAGAAGGCT
GATCGCCGGCTCCGACAACAGCAACAACAGCAACAGCAATGACAACAACA
GTAAGGTTAGGAAAGCTTTGGTACACGCGCAAATGAGCAACGCGCAGGGC
GCCTCAGTCGCGCGGGGCGGAGGAGAGGAGAGGATATCGTTATCGTTGTT
CGATACCATGTGTGGTTAAGCAACTGAATTTGATTTTTTTTACGGAATCT
GTCCGCCCTGCGTAGATAGGGTGCCGTTGGCTCATTGACGCCTGTTCACC
TCTCTGTTGGGACCAGCACCTCTCTGTTGGGACGATCAAACTTGTGGACA
AAGCAGCAGCTGCGCGAAGGTTCGACGGTCCACGTGTCCGTCGTTACTTC
TTGGCAATGTTTGATGCAATGCCAAGGATGAAGGGTATTTTAGGTCTGGC
GAGGTAGGGAGTAGTTGGTGCTGTCTACGTCAATGATACGCTCGACTGCT
GTTTTCGTTTGGACAGGCGTTTTGGTGTAGAATGGTTACTTCCATCGCAG
CAGTTTTGAGAATGTGAGAATAGCATGCGCAGCACCTGGTATTAACGAGA
TTCAGGTGTTCCGATTTTGCATCATTCCAACATTCTTGTGGTGTGTTCAC
CTTCTGCAAACTCTGCTTGCACGTTACATAGCTCCCATTCGGGGCCCAAA
AAACTGTAGCAATGTCGCTGATTAAGCCCTCCATCGCCTCCACAGTAAAT
CAAATGTACGACGCTATTGCAGCATACGTACCATGCATCTACAAACTGCT
TTGGCAGCAACGAGATTGTCGTCATGACCCCCACTACATCCAACCATTCC
ATAGCGCTGGGTCAAGTTTTGACACTTCTATCGGCCGCCAACTGCAATCC
TCCTTCTGACACCACCCTACACATCTTCCAGGTTCGTACGACAGCAGGAT
CAGCTGCAACTGCCGGCGACGAAAGCAACATCTCGGAGTTTCCCGAAATT
GCGAGCTTTTTCGGAGAGGAGGAGTGCTCCCTAGACGCGTGGCTGGCTCC
AGAACCGTCATCATCATCAGCGACGGTGTCGAGTCGGGAGAAGGAAGCGG
ACAAGCGGGAGTTCCTTGAAGACATGGAGGCGTGGCACTTGCTGCGCAGT
TGGTGCGTAAGCGGCGGCAGGCTCGGCGAACTTGGAAAGGGCGTTTTGTT
TTTTGTATATGACAACAACTATATATCTATCCATACATGAGAGGGTCTAG
GAAGTTTCGCAGTCAATTTATAGCGTAAGCTGAACACTACCTGGGGTTCT
GCGTTTCCCCAAGTCCCCAAGCAGCATGTAGCGATATCTACTGATTGGGT
AACAGGCTGTACAAGATAGTTTGGTGTACTTGCATCGTGTTTTTAGTAAG
TAAACATAACCTCGCACGTTTTTTGTTTTCTTTGCGCGGCGGGGTTGATG
CAACACGGACAGCATTCGCCTTAAGCCTTAATTAGGTTTCAAGTGTCACC
CGTGTCCACCTCGGGGATACCAGCCTGATCTCGTGTTTGCTCTCGTGGCT
ACGACCGCATACACATGCGTAAAGTAGCGCGGTACTTTCGTGTACCTGCG
ATGGACCAGGAGCGAGGGCTAGTACGGAGCAGATGCAGGCGGTGGAGTTC
ATACGAAGGACCCACAAAGAGAGTTCCCGGAAAATTCCCGGAAGAGCAGA
CGAGGAGAAAAGTAGCGGGGCATGTCGTGAATCCCTCAGCAGCAGTGTGT
TCCTTGCTTTCAAAGCATATCGAGTGCAAAATGAGCGTGCCTCAAGCTGT
GTTGCTCTTTCGTTTTTTTCCTTGCGGTACACGTGTGTGCTTGAGCAGGT
TCGGTTTCGGCGATCTTTTGTGCCTGCATGAAGCAGCGACAAACCCTGCA
TCATCATCCCGTTCGGGAGACGGCAGTGAGTCCGGGCTTCCGTTTTTGTG
ACCTGCCTAGTTCGAGGACGGTAATGGCCGCCGAAGCAATCCTCCCGTTC
CCTGCTCCTGGGTCGGTCTGAACCGCTGGCCCCCCCCCCCCCCCTCGATG
CTATTCGCGCGGCCGCTTATCCTTGATCCCTGCTTCTACCATAAGCCTTC
CCGTGCCCTTCATGTGTGTTTTCTCGCCTTTACGTGTTACTGTCTCGGTA
CATCCTGCGGCATCCCCCGGTCCACCTGTCTTTCGCCGTCGTTGCTGTTT
GGCTTCTCTCACGCAGCCGGGGCGGTCTTGAGCTTGGAGCAGCTGCTTTC
CACGGGCGTGATGGCCATGGAGGACCGGCGGTGCGGAGCGGTGCTGGCGG
TGCAGCAGCAGCCGGGGGGCGACGGCGACGGTCGGCGCGGTCGTGGCAGC
CGAGGTGCGACAGGAGCGTTTGTCGCCTCGGTTTGTGTGTTTTTGTTGGA
TGTACAAGAAAGATGACCTGCTTCTTACCGTGCTGGTCGATCCTGTTTGG
CTCGTCCGAGTCATGGATGTAATATGGAGTACTCTGCAACTGATAGCTGT
ACGTCTGCGTTTGTTTTGTTTTTGTTCTTGTGAGCACCGACCGCGCTAAC
CGGCTGACCGATGAAAAAAAGTCAATGCCAGCGGGTGTTGTTCGCGTGTG
TGTTTAAAAGCATTGGCGACCGCAATAATCGCTTGATCAATGCATCATCA
TAAGTTTTTTAATGGCGGGGCAGACACAACGCTGCTAGGTATGTGCGTGT
GTGTGATGCGTCCGTTTTGTTTCCTTGGACCCTTGCTTCCACGCACCGGG
ATGGACGTACCCCCCCCCCCCACCCCCTTGCTTAGACTCGGCGTCGCGGA
GAGGGGTGTCGATCAAGGGGTACGCCATACTCTCCCCCACCGGCCACGCC
GACTGGACCCGGAGAGCCGAAACCGTGCGCCTGGAGAGCGAAGCGTCATC
GGTTGTACCGCGTTCTCGGCTGTCTCTGGAGGCCCTCGGGGAGTTGCTAA
CGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14839:1012..4116-

>mRNA_Ecto-sp13_S_contig14839.3689.1 ID=mRNA_Ecto-sp13_S_contig14839.3689.1|Name=mRNA_Ecto-sp13_S_contig14839.3689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14839:1012..4116- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGAGAATCAGCAACAGGGCTCCGGCACAGCTGCTGTCGGCTGCGA
GCACGACGACTGGAAGGATTTCTCGTGCGTCACAAAGTGGGAGCACTTTA
TCAACGACGTTGCGGGAGCAGCAGCAGCAGCAACAACGCAGAGGCGGAGC
AACAAGAAGCTCACTTCATATGACGGGCGCTCATACTGTTTGAGAAGGCT
GATCGCCGGCTCCGACAACAGCAACAACAGCAACAGCAATGACAACAACA
GTAAGGTTCGTACGACAGCAGGATCAGCTGCAACTGCCGGCGACGAAAGC
AACATCTCGGAGTTTCCCGAAATTGCGAGCTTTTTCGGAGAGGAGGAGTG
CTCCCTAGACGCGTGGCTGGCTCCAGAACCGTCATCATCATCAGCGACGG
TGTCGAGTCGGGAGAAGGAAGCGGACAAGCGGGAGTTCCTTGAAGACATG
GAGGCGTGGCACTTGCTGCGCAGTTGGTTCGGTTTCGGCGATCTTTTGTG
CCTGCATGAAGCAGCGACAAACCCTGCATCATCATCCCGTTCGGGAGACG
GCACCGGGGCGGTCTTGAGCTTGGAGCAGCTGCTTTCCACGGGCGTGATG
GCCATGGAGGACCGGCGGTGCGGAGCGGTGCTGGCGGTGCAGCAGCAGCC
GGGGGGCGACGGCGACGGTCGGCGCGGTCGTGGCAGCCGAGACTCGGCGT
CGCGGAGAGGGGTGTCGATCAAGGGGTACGCCATACTCTCCCCCACCGGC
CACGCCGACTGGACCCGGAGAGCCGAAACCGTGCGCCTGGAGAGCGAAGC
GTCATCGGTTGTACCGCGTTCTCGGCTGTCTCTGGAGGCCCTCGGGGAGT
TGCTAACGGAC
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