mRNA_Ecto-sp13_S_contig1483.3681.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1483.3681.1
Unique NamemRNA_Ecto-sp13_S_contig1483.3681.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1483.3681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1483contigEcto-sp13_S_contig1483:13506..14063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size503
Hectar predicted targeting categorysignal peptide
Exons2
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462791.2055283-CDS-Ecto-sp13_S_contig1483:13505..137301681462791.2055283-CDS-Ecto-sp13_S_contig1483:13505..13730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1483 13506..13730 -
1681462791.2167828-CDS-Ecto-sp13_S_contig1483:13787..140631681462791.2167828-CDS-Ecto-sp13_S_contig1483:13787..14063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1483 13788..14063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1483.3681.1prot_Ecto-sp13_S_contig1483.3681.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1483 13506..14063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1483.3681.1

>prot_Ecto-sp13_S_contig1483.3681.1 ID=prot_Ecto-sp13_S_contig1483.3681.1|Name=mRNA_Ecto-sp13_S_contig1483.3681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
FVLANGNPQSWLNTACRRLLPSTFVLVLAHGTFSGSCVCATWISPRRYIV
PSRLVFVAQFSLVLAVDVVFLASPYSSIGTFPGICAIFRFGSPQYLSDLL
YLGPRDSGHCTYVEIPRCHTPTSRAANTFLASRDTSSLTPRLGQYLLLVI
NISLQYSKTITESLGIL
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mRNA from alignment at Ecto-sp13_S_contig1483:13506..14063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1483.3681.1 ID=mRNA_Ecto-sp13_S_contig1483.3681.1|Name=mRNA_Ecto-sp13_S_contig1483.3681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1483:13506..14063- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGTTCTAGCTAACGGCAATCCTCAGTCATGGTTGAATACGGCATGTCG
TCGTCTTCTACCATCTACGTTTGTATTGGTATTGGCGCATGGTACGTTTT
CCGGCTCGTGCGTTTGTGCGACTTGGATTTCTCCACGCAGATACATAGTA
CCATCTCGACTGGTGTTCGTAGCACAGTTTTCCTTGGTCTTGGCAGTCGA
CGTTGTCTTTTTGGCTTCTCCGTATTCTTCGATAGGAACATTTCCGGGCA
TCTGTGCTATTTTTCGTTTTGGTTCTGCACGCAAGAACTACTGTACATCA
CCTTCTGTTTGTGTAAGCTGCAAAGGGAACGAGCCTCAATATCTTTCCGA
CCTTCTTTATCTTGGACCAAGGGACAGTGGTCATTGTACATATGTCGAAA
TTCCGCGTTGCCACACACCAACCTCTCGAGCGGCAAATACTTTTCTCGCG
TCACGCGACACGTCGTCTCTTACGCCTCGCCTTGGACAATATCTCCTCCT
TGTGATAAATATTTCATTGCAATATTCCAAAACCATCACTGAATCTCTCG
GAATTTTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1483:13506..14063-

>mRNA_Ecto-sp13_S_contig1483.3681.1 ID=mRNA_Ecto-sp13_S_contig1483.3681.1|Name=mRNA_Ecto-sp13_S_contig1483.3681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1483:13506..14063- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGTTCTAGCTAACGGCAATCCTCAGTCATGGTTGAATACGGCATGTCG
TCGTCTTCTACCATCTACGTTTGTATTGGTATTGGCGCATGGTACGTTTT
CCGGCTCGTGCGTTTGTGCGACTTGGATTTCTCCACGCAGATACATAGTA
CCATCTCGACTGGTGTTCGTAGCACAGTTTTCCTTGGTCTTGGCAGTCGA
CGTTGTCTTTTTGGCTTCTCCGTATTCTTCGATAGGAACATTTCCGGGCA
TCTGTGCTATTTTTCGTTTTGGTTCTCCTCAATATCTTTCCGACCTTCTT
TATCTTGGACCAAGGGACAGTGGTCATTGTACATATGTCGAAATTCCGCG
TTGCCACACACCAACCTCTCGAGCGGCAAATACTTTTCTCGCGTCACGCG
ACACGTCGTCTCTTACGCCTCGCCTTGGACAATATCTCCTCCTTGTGATA
AATATTTCATTGCAATATTCCAAAACCATCACTGAATCTCTCGGAATTTT
A
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