mRNA_Ecto-sp13_S_contig14827.3679.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14827.3679.1 vs. uniprot
Match: D7FK55_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK55_ECTSI) HSP 1 Score: 293 bits (751), Expect = 1.140e-97 Identity = 139/143 (97.20%), Postives = 140/143 (97.90%), Query Frame = 3
Query: 3 EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEEEGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLSSDKQPKKPQRACHTMPESPLRGP 431
EVNAFMCPPLFGWLVGKSELTEGVVD+KAAKE EGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLSSDKQ KK QRACHTMPESPLRGP
Sbjct: 57 EVNAFMCPPLFGWLVGKSELTEGVVDVKAAKEGEGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLSSDKQLKKRQRACHTMPESPLRGP 199
BLAST of mRNA_Ecto-sp13_S_contig14827.3679.1 vs. uniprot
Match: A0A6H5L107_9PHAE (D27-like_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L107_9PHAE) HSP 1 Score: 299 bits (766), Expect = 3.590e-95 Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 3
Query: 3 EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEEEGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLSSDKQPKKPQRACHTMPESPLRGP 431
EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKE EGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLSS+KQPKKPQRACHTMPESPLRGP
Sbjct: 409 EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEGEGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLSSNKQPKKPQRACHTMPESPLRGP 551
BLAST of mRNA_Ecto-sp13_S_contig14827.3679.1 vs. uniprot
Match: A0A835ZB75_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB75_9STRA) HSP 1 Score: 161 bits (407), Expect = 2.240e-45 Identity = 79/139 (56.83%), Postives = 94/139 (67.63%), Query Frame = 3
Query: 3 EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEEEGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLSSDKQPKKPQRACHTMPESP 419
E+NA MC L WLVG S +T V + G EVWR VKVERCRYLEAS+CKG CMNLCK+PTE FFRE+LGMPL + P+F+DLSC F FG + P EDPL+ EPC+ +C +S + RACHTMPE P
Sbjct: 76 ELNAVMCAILSDWLVGPSTVTTAEVPVA------GGGTEVWRAAVKVERCRYLEASRCKGACMNLCKVPTETFFREELGMPLTLVPDFDDLSCTFTFGVEPAPLAEDPLVVEPCYYQCPASSAAYARSGRACHTMPELP 208
BLAST of mRNA_Ecto-sp13_S_contig14827.3679.1 vs. uniprot
Match: E1Z296_CHLVA (D27-like_C domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z296_CHLVA) HSP 1 Score: 117 bits (293), Expect = 5.050e-29 Identity = 60/121 (49.59%), Postives = 74/121 (61.16%), Query Frame = 3
Query: 3 EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEEEGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLSS 365
E+NA + P F WLVG + A E +G +Q + VK+ERCRYL S C G C+NLCK PT+AFF E LGMPL MTPNFEDLSCE FG+ P EDP ++PC C ++
Sbjct: 44 ELNAKITPAFFTWLVGPMQT--------AVTEVDGQQQ---MSAVKIERCRYLAESGCTGMCINLCKSPTQAFFTEQLGMPLTMTPNFEDLSCEMVFGKRPPPLSEDPAAQQPCLASCATA 153
BLAST of mRNA_Ecto-sp13_S_contig14827.3679.1 vs. uniprot
Match: I6PEW1_CHAGL (Putative D27 family protein n=1 Tax=Chaetosphaeridium globosum TaxID=96477 RepID=I6PEW1_CHAGL) HSP 1 Score: 119 bits (299), Expect = 1.040e-28 Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = 3
Query: 3 EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEEEGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLS 362
E+NA++ P F WLVG ++L E V++ K+ G VK+E+CRYLE S C G C+N+CK+PT+ FF + G+PL MTPNFED+SCE +GQ A P EEDP ++PC+ S
Sbjct: 151 EINAWITVPFFAWLVGPAKLYE--VEVNGVKQWSG---------VKIEKCRYLENSGCVGMCVNMCKVPTQDFFTNEFGLPLTMTPNFEDMSCEMVYGQLAPPVEEDPAYKQPCFAALCS 259
BLAST of mRNA_Ecto-sp13_S_contig14827.3679.1 vs. uniprot
Match: A0A068UXA2_COFCA (D27-like_C domain-containing protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068UXA2_COFCA) HSP 1 Score: 116 bits (291), Expect = 2.520e-28 Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 3
Query: 3 EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEEEGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLS 362
E NA + P F WLVG SE+ E V++ K+ G V++++CRYLE S C G C+N+CK+PT+ FF ++ G+PL MTPNFED+SCE +GQ P E+DP ++PC+ + S
Sbjct: 76 EFNATITVPFFDWLVGPSEVVE--VEVNGVKQRSG---------VRIKKCRYLENSGCVGMCVNMCKIPTQDFFTDEFGLPLTMTPNFEDMSCEMVYGQAPPPFEDDPASKQPCFADICS 184
BLAST of mRNA_Ecto-sp13_S_contig14827.3679.1 vs. uniprot
Match: A0A176W1W2_MARPO (D27-like_C domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W1W2_MARPO) HSP 1 Score: 118 bits (295), Expect = 4.860e-28 Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 3
Query: 3 EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEEEGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLSSDKQPKKP 386
E NAF+ P+F WLVG +L + V++ + ++ VK+++CRYLE S C G C+N+CKLPT+ FF ++ G+PL MTPNFED+SCE FG+ P +EDP ++PC+ E + + QPK P
Sbjct: 148 EFNAFITIPVFKWLVGPCDLQD--VEVNGVMQ---------KSLVKIKKCRYLENSGCVGMCVNMCKLPTQDFFTKEFGLPLSMTPNFEDMSCEMVFGKMPAPLDEDPAFQQPCF-EAICTMAQPKSP 263
BLAST of mRNA_Ecto-sp13_S_contig14827.3679.1 vs. uniprot
Match: UPI0005CA1A4F (beta-carotene isomerase D27, chloroplastic isoform X1 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005CA1A4F) HSP 1 Score: 115 bits (287), Expect = 6.240e-28 Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 3
Query: 3 EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEEEGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTECLS 362
E NA + P F WLVG SE+ E V+++ K+ G V++++CRYLE S C G C+N+CK PT+ FF + G+PL M PNFED+SC+ +GQ P EEDP+ ++PC+T+ S
Sbjct: 59 EFNAALTVPFFHWLVGPSEVIE--VEVEGVKQRSG---------VRIKKCRYLENSGCVGMCVNMCKFPTQDFFTNEFGLPLTMIPNFEDMSCDMVYGQVPPPFEEDPVSKQPCFTDICS 167
BLAST of mRNA_Ecto-sp13_S_contig14827.3679.1 vs. uniprot
Match: A0A2V0P9C6_9CHLO (D27-like_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P9C6_9CHLO) HSP 1 Score: 117 bits (293), Expect = 7.500e-28 Identity = 59/116 (50.86%), Postives = 76/116 (65.52%), Query Frame = 3
Query: 3 EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEEEGPRQ-EVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCW 347
E NA + F WLVG+SEL E V + GP Q R+ V +++CRYLE+S C G C N+CK+PT+AFF E+ G+PL M PNFEDLSCE FGQ P EEDP+ ++PC+
Sbjct: 137 EFNALIASMAFFWLVGESELREADVVV-------GPGQVRRQRSVVYIKKCRYLESSGCVGMCTNMCKVPTQAFFTEEFGLPLTMNPNFEDLSCEMIFGQAPPPVEEDPVYQQPCF 245
BLAST of mRNA_Ecto-sp13_S_contig14827.3679.1 vs. uniprot
Match: I6PI00_CHLAT (Putative D27 protein n=1 Tax=Chlorokybus atmophyticus TaxID=3144 RepID=I6PI00_CHLAT) HSP 1 Score: 114 bits (285), Expect = 1.450e-27 Identity = 56/118 (47.46%), Postives = 73/118 (61.86%), Query Frame = 3
Query: 3 EVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEEEGPRQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLGMPLRMTPNFEDLSCEFAFGQDALPAEEDPLMREPCWTEC 356
E+NA++ P F WLVG E+ + VDI + R+ V +++CRYLE S C G C+NLCK PT+ FF E++GMPL M PNF+DLSCE FGQ P EED +PC+ C
Sbjct: 67 ELNAWVTPTFFKWLVGPMEVRD--VDINGVTQ---------RSQVHIKKCRYLETSGCVGMCVNLCKFPTQKFFTEEMGMPLTMKPNFDDLSCEMIFGQVPPPIEEDEARAQPCFATC 173 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14827.3679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14827.3679.1 >prot_Ecto-sp13_S_contig14827.3679.1 ID=prot_Ecto-sp13_S_contig14827.3679.1|Name=mRNA_Ecto-sp13_S_contig14827.3679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp MCPPLFGWLVGKSELTEGVVDIKAAKEEEGPRQEVWRNTVKVERCRYLEAback to top mRNA from alignment at Ecto-sp13_S_contig14827:1168..3827+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14827.3679.1 ID=mRNA_Ecto-sp13_S_contig14827.3679.1|Name=mRNA_Ecto-sp13_S_contig14827.3679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14827:1168..3827+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14827:1168..3827+ >mRNA_Ecto-sp13_S_contig14827.3679.1 ID=mRNA_Ecto-sp13_S_contig14827.3679.1|Name=mRNA_Ecto-sp13_S_contig14827.3679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14827:1168..3827+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |