mRNA_Ecto-sp13_S_contig14817.3674.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14817.3674.1
Unique NamemRNA_Ecto-sp13_S_contig14817.3674.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14817.3674.1 vs. uniprot
Match: D7FXJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ1_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 5.380e-56
Identity = 194/328 (59.15%), Postives = 198/328 (60.37%), Query Frame = 1 
Query:   40 RIPTVSEASMMGRVGAGGDNMRRGRRGIQITISTNKATQDNGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLVPRSCEHCRMPYIPKSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLEGSLAGGSSLGSLASSLAAKACDNDNNSKSESGSCDKGKKEGPFSPLSQLIEDRTARPSPASSSSSAATSRQGSTNGGAYSXXXGYRGSSGGSRDG-GENTDANGEEGRFCSGECKMSYMLMNPAAVRRRRAAHAARMAMRAAQIEASIERSRRAA 1020
            RIPTVSEASMMG+VGA G NMRRGRRGIQITISTNK +                                                           RLVPRSCEHCRMPYIPKSAA     XXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXX     EG               AAK  DNDNNSKSESGSCDKGKKEGPFSPLSQLI DRTARPSPASS                  XXX             G+NTDAN EEGRFCSGECKMSYMLMNPAA+RRRRAAHAARMAMRAAQIE SIERSRR A
Sbjct:   70 RIPTVSEASMMGQVGARGGNMRRGRRGIQITISTNKGS---------------------------FFLHDSSHVIAAAANGSGSKGEDDDAKAHRRRRLVPRSCEHCRMPYIPKSAAAAPVSXXXXXXXXXXXXXXXXXEEASVEXXXXXXXXXXXXXXXXXXXXXX-----EGXXXXXXXXXXXXXXXAAKTSDNDNNSKSESGSCDKGKKEGPFSPLSQLIGDRTARPSPASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNRGDNTDANSEEGRFCSGECKMSYMLMNPAAIRRRRAAHAARMAMRAAQIEVSIERSRRVA 365
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14817.3674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXJ1_ECTSI5.380e-5659.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14817contigEcto-sp13_S_contig14817:811..2010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1062
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_001870.1
Cds size1062
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462790.7027056-CDS-Ecto-sp13_S_contig14817:810..10381681462790.7027056-CDS-Ecto-sp13_S_contig14817:810..1038Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14817 811..1038 +
1681462790.7149038-CDS-Ecto-sp13_S_contig14817:1176..20101681462790.7149038-CDS-Ecto-sp13_S_contig14817:1176..2010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14817 1177..2010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14817.3674.1prot_Ecto-sp13_S_contig14817.3674.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14817 811..2010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14817.3674.1

>prot_Ecto-sp13_S_contig14817.3674.1 ID=prot_Ecto-sp13_S_contig14817.3674.1|Name=mRNA_Ecto-sp13_S_contig14817.3674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=354bp
RPRPSPSPVQKIQRIPTVSEASMMGRVGAGGDNMRRGRRGIQITISTNKA
TQDNGAPPPPPRRRRSSGGSSNNNSPGSFFLHDSSHVIAAAASGSGSKGE
DDDAKAHRRRRLVPRSCEHCRMPYIPKSAAAAPVSSSTSTDSSSSGVAAG
GGGGGGGEEAGVEASSRGSSRSSCGGGSAGGGVVLEGSLAGGSSLGSLAS
SLAAKACDNDNNSKSESGSCDKGKKEGPFSPLSQLIEDRTARPSPASSSS
SAATSRQGSTNGGAYSSSSGYRGSSGGSRDGGENTDANGEEGRFCSGECK
MSYMLMNPAAVRRRRAAHAARMAMRAAQIEASIERSRRAARRVESTPGGG
GGC*
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mRNA from alignment at Ecto-sp13_S_contig14817:811..2010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14817.3674.1 ID=mRNA_Ecto-sp13_S_contig14817.3674.1|Name=mRNA_Ecto-sp13_S_contig14817.3674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1200bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14817:811..2010+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCACGCCCGTCCCCCTCCCCCGTACAAAAAATACAGCGCATCCCCAC
CGTGTCGGAGGCTTCGATGATGGGGCGAGTTGGAGCCGGAGGAGACAACA
TGAGGCGCGGTCGACGCGGCATCCAGATCACCATCAGCACCAACAAGGCC
ACTCAAGACAACGGGGCGCCCCCGCCCCCGCCACGCCGACGGCGCAGCAG
CGGCGGCAGCAGCAACAACAACAGCCCGGTGTCCGCATACGGCGACGGAA
GCGGCCACCACGCCTTCGCCTTGTGCACCTCCCCGGACTGTGAGCTGTGC
AACGGCAGCGCCGATGAGGACGGCTACGGCGGCGGCGGCGGCGACTCGGC
CTCCTCTCGGCGGCAGGGCTCCTTCTTTCTCCACGACAGCAGCCACGTTA
TCGCCGCCGCTGCCAGCGGCAGCGGCAGCAAGGGGGAGGACGACGACGCG
AAAGCGCACCGGCGGCGGCGGCTCGTCCCTCGCTCTTGCGAGCACTGCCG
GATGCCGTACATCCCGAAAAGCGCTGCTGCCGCTCCGGTGTCATCGTCAA
CCTCAACCGACAGCAGTAGCAGCGGGGTTGCGGCGGGCGGCGGCGGCGGC
GGCGGCGGCGAGGAGGCTGGTGTCGAGGCGTCGTCTCGTGGAAGTTCTCG
GAGCAGCTGTGGCGGTGGTAGCGCGGGAGGAGGCGTCGTGCTGGAGGGAA
GCCTGGCGGGCGGGAGTAGCTTGGGGTCGTTGGCGTCGTCGTTGGCGGCA
AAGGCTTGCGACAACGACAACAACAGCAAGAGCGAGAGCGGCAGCTGCGA
CAAGGGCAAGAAGGAGGGGCCTTTCTCCCCCCTGTCTCAGCTCATCGAAG
ACAGGACCGCACGCCCATCGCCGGCCTCCAGCAGCAGCAGCGCCGCCACC
TCCCGTCAGGGCAGCACCAACGGCGGCGCGTACAGCAGCAGCTCGGGCTA
CCGCGGTAGTAGTGGCGGCTCCCGTGACGGTGGCGAGAACACCGACGCCA
ACGGCGAGGAGGGAAGGTTCTGCTCCGGAGAGTGCAAGATGAGCTACATG
CTCATGAACCCCGCCGCCGTCCGTAGGCGGAGGGCGGCGCACGCCGCGCG
CATGGCCATGCGCGCTGCCCAGATCGAGGCTAGCATTGAGAGGTCGAGAC
GGGCGGCACGGCGCGTCGAGTCCACCCCGGGCGGCGGCGGCGGCTGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14817:811..2010+

>mRNA_Ecto-sp13_S_contig14817.3674.1 ID=mRNA_Ecto-sp13_S_contig14817.3674.1|Name=mRNA_Ecto-sp13_S_contig14817.3674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1062bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14817:811..2010+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCACGCCCGTCCCCCTCCCCCGTACAAAAAATACAGCGCATCCCCAC
CGTGTCGGAGGCTTCGATGATGGGGCGAGTTGGAGCCGGAGGAGACAACA
TGAGGCGCGGTCGACGCGGCATCCAGATCACCATCAGCACCAACAAGGCC
ACTCAAGACAACGGGGCGCCCCCGCCCCCGCCACGCCGACGGCGCAGCAG
CGGCGGCAGCAGCAACAACAACAGCCCGGGCTCCTTCTTTCTCCACGACA
GCAGCCACGTTATCGCCGCCGCTGCCAGCGGCAGCGGCAGCAAGGGGGAG
GACGACGACGCGAAAGCGCACCGGCGGCGGCGGCTCGTCCCTCGCTCTTG
CGAGCACTGCCGGATGCCGTACATCCCGAAAAGCGCTGCTGCCGCTCCGG
TGTCATCGTCAACCTCAACCGACAGCAGTAGCAGCGGGGTTGCGGCGGGC
GGCGGCGGCGGCGGCGGCGGCGAGGAGGCTGGTGTCGAGGCGTCGTCTCG
TGGAAGTTCTCGGAGCAGCTGTGGCGGTGGTAGCGCGGGAGGAGGCGTCG
TGCTGGAGGGAAGCCTGGCGGGCGGGAGTAGCTTGGGGTCGTTGGCGTCG
TCGTTGGCGGCAAAGGCTTGCGACAACGACAACAACAGCAAGAGCGAGAG
CGGCAGCTGCGACAAGGGCAAGAAGGAGGGGCCTTTCTCCCCCCTGTCTC
AGCTCATCGAAGACAGGACCGCACGCCCATCGCCGGCCTCCAGCAGCAGC
AGCGCCGCCACCTCCCGTCAGGGCAGCACCAACGGCGGCGCGTACAGCAG
CAGCTCGGGCTACCGCGGTAGTAGTGGCGGCTCCCGTGACGGTGGCGAGA
ACACCGACGCCAACGGCGAGGAGGGAAGGTTCTGCTCCGGAGAGTGCAAG
ATGAGCTACATGCTCATGAACCCCGCCGCCGTCCGTAGGCGGAGGGCGGC
GCACGCCGCGCGCATGGCCATGCGCGCTGCCCAGATCGAGGCTAGCATTG
AGAGGTCGAGACGGGCGGCACGGCGCGTCGAGTCCACCCCGGGCGGCGGC
GGCGGCTGCTAA
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