mRNA_Ecto-sp13_S_contig1481.3672.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1481.3672.1
Unique NamemRNA_Ecto-sp13_S_contig1481.3672.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1481.3672.1 vs. uniprot
Match: D8LKT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT5_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 3.720e-57
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:  205 MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLKSAAHLLWQSGDIVDLGTPITDGATLHLDTVRELTLPSQEAAGDVYASGAHDHG 489
            MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLKSAAHLLWQSGDIVDLGTPITDGATLHLDTVREL LPSQEAAGDVY SG HDHG
Sbjct:    1 MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLKSAAHLLWQSGDIVDLGTPITDGATLHLDTVRELALPSQEAAGDVYTSGGHDHG 95
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BLAST of mRNA_Ecto-sp13_S_contig1481.3672.1 vs. uniprot
Match: A0A6H5LJ65_9PHAE (DUF202 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ65_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.540e-53
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:  205 MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLKSAAHLLWQSGDIVDLGTPITDGATLHLDTVRELTLPSQEAAGDVYASGAHDHG 489
            MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLKSAAHLL QSGDIVDLGTPITDGATLHLDTVREL LPSQEAAGDVYASG HDHG
Sbjct:    1 MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLKSAAHLLRQSGDIVDLGTPITDGATLHLDTVRELALPSQEAAGDVYASGGHDHG 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1481.3672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKT5_ECTSI3.720e-5796.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LJ65_9PHAE3.540e-5396.84DUF202 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1481contigEcto-sp13_S_contig1481:14667..16294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size719
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_005460.1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462790.5940037-UTR-Ecto-sp13_S_contig1481:14666..148701681462790.5940037-UTR-Ecto-sp13_S_contig1481:14666..14870Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1481 14667..14870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462790.6072338-CDS-Ecto-sp13_S_contig1481:14870..149291681462790.6072338-CDS-Ecto-sp13_S_contig1481:14870..14929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1481 14871..14929 +
1681462790.6164715-CDS-Ecto-sp13_S_contig1481:15840..162941681462790.6164715-CDS-Ecto-sp13_S_contig1481:15840..16294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1481 15841..16294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1481.3672.1prot_Ecto-sp13_S_contig1481.3672.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1481 14871..16294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1481.3672.1

>prot_Ecto-sp13_S_contig1481.3672.1 ID=prot_Ecto-sp13_S_contig1481.3672.1|Name=mRNA_Ecto-sp13_S_contig1481.3672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLKSAAHLLWQ
SGDIVDLGTPITDGATLHLDTVRELTLPSQEAAGDVYASGAHDHGGSSST
TTQRRVNCSNTAVGGGGGEGGLATTRRGGSVSVTASGGGGDCRQRPSTTE
SSLAKRRALRTIRLFFGVEGG
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mRNA from alignment at Ecto-sp13_S_contig1481:14667..16294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1481.3672.1 ID=mRNA_Ecto-sp13_S_contig1481.3672.1|Name=mRNA_Ecto-sp13_S_contig1481.3672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1628bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1481:14667..16294+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCACTCGCGGTAACCAACCACCCTTAGGCATATAGCTGTTGCGGTAC
CCGAAGGGGCTAGGGGACGAGGAAGATTTGGGTATATCACAAACCAATTT
CCCATCGCTTCCGCTGACGGCAGGGAAATAGCCTTTTGTCGGATGGGCAA
ACGCCAACGCGGCCAGGCAAACGCCCCTCAGGAGACAGACCCAGGCAGGC
GGAGATGGCGCGGCGCAGCGTGACGATCGTTGCCTCGGACGGAAGGCGAG
AAGGGATATCCTGGTGAGATCCCCCGCCCCTCGAGATTTCGGTGTTTCAC
CACACGGCAGCTATTGTAGCAGCCGTTGTAGTGGTCGCGGATTCATTGTG
TCTTGTGACGCTTCCTGCTGCGGTGCGATAACGTAGGAGCGAAAACAAGT
CGCTCCGCATGTCGTTCATGAAGGTCTATCACAGCAGTACACAGCAGGAT
TCGACGGAAGATAGCCTCTCAGCATAGGCGATGCATCTGTATACTGTGTT
ACGGCCGCGGCGGGGTTGCGGTCCTTCTCAATCCCCCGGATACTGCTGTT
TTTTGCTCAACGTTGTGTCTCGGGCAACCCGCACGCAACTCGCCGATCCT
CTCAATCTCGAGCCTGTAAGCCTGTTGCTGAAACAACGATACAACTGGGT
GGGTGGTTGACACGAACCGCAATGCGTGCTCGTAACCTGCGGCAGCAGTA
TGTCCGTTTGGATGAGGTGCAAAGAGGAAAGCAGCTCACCCTCGGTACGG
TTCTTGCTCTTAGAGAGCAGATTGGCGAGCGACGCAGCACGTTGTAGCGT
TTTTATTGGGCGCCGTATCACATACCGTACACCGCAGCTTACGGTGGGTT
ACGTAAGGTGTAACACCCCCTGGACCGATGTCGAAATTCGATTACTCGGC
CAGATAAAACAGCGACGGTGCCATAAATGGCGGCGTTGAAACTGTCTTGT
CGAGAGCGTTCCCGAAATGAATCGTTTGATTTCGGCATCCTCTTCGTCGT
GGAACGTTAGAGGTTTTGTATTCGATCCAGGGCTAGCGGTATCTTGGGAT
CGGGTGCCGAGCACCCCGCAACCGTATGTCACCCCGCACCACCAGCGTTT
GTGATGCGACACAGCAATAGCTCCCTTTTCCACCTTCTCTCACAACCCGG
CCGACGCCGCCGAACGAAAAACAGGTACGACGGGGCGACAGAAGCGGCGG
TGTTGCGCTGTGCCCTCCTGGCCCTTGGCCTCCCGCTAAAGAGCGCCGCG
CACCTGCTCTGGCAGTCCGGAGACATCGTCGACCTTGGCACTCCGATCAC
GGACGGCGCCACCCTTCACCTCGACACCGTCCGCGAGCTGACGCTGCCGT
CACAAGAGGCCGCCGGTGATGTCTACGCCAGCGGCGCCCACGACCACGGC
GGTAGTAGCAGCACCACCACCCAGCGGCGTGTGAATTGCTCGAACACCGC
GGTCGGCGGCGGCGGCGGCGAAGGGGGACTCGCGACAACCCGGCGTGGTG
GATCGGTCTCGGTAACGGCCTCTGGCGGCGGCGGGGACTGCCGGCAGCGG
CCGTCGACGACCGAATCGTCGCTGGCGAAGCGGAGGGCGCTGCGGACAAT
CCGGCTATTTTTCGGGGTAGAGGGAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1481:14667..16294+

>mRNA_Ecto-sp13_S_contig1481.3672.1 ID=mRNA_Ecto-sp13_S_contig1481.3672.1|Name=mRNA_Ecto-sp13_S_contig1481.3672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1481:14667..16294+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGGCGCAGCGTGACGATCGTTGCCTCGGACGGAAGGCGAGAAGG
GATATCCTGGTACGACGGGGCGACAGAAGCGGCGGTGTTGCGCTGTGCCC
TCCTGGCCCTTGGCCTCCCGCTAAAGAGCGCCGCGCACCTGCTCTGGCAG
TCCGGAGACATCGTCGACCTTGGCACTCCGATCACGGACGGCGCCACCCT
TCACCTCGACACCGTCCGCGAGCTGACGCTGCCGTCACAAGAGGCCGCCG
GTGATGTCTACGCCAGCGGCGCCCACGACCACGGCGGTAGTAGCAGCACC
ACCACCCAGCGGCGTGTGAATTGCTCGAACACCGCGGTCGGCGGCGGCGG
CGGCGAAGGGGGACTCGCGACAACCCGGCGTGGTGGATCGGTCTCGGTAA
CGGCCTCTGGCGGCGGCGGGGACTGCCGGCAGCGGCCGTCGACGACCGAA
TCGTCGCTGGCGAAGCGGAGGGCGCTGCGGACAATCCGGCTATTTTTCGG
GGTAGAGGGAGGG
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