mRNA_Ecto-sp13_S_contig14807.3667.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14807.3667.1
Unique NamemRNA_Ecto-sp13_S_contig14807.3667.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14807.3667.1 vs. uniprot
Match: D7FTQ1_ECTSI (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTQ1_ECTSI)

HSP 1 Score: 729 bits (1882), Expect = 2.650e-247
Identity = 461/561 (82.17%), Postives = 467/561 (83.24%), Query Frame = 1 
Query:    1 QLAASVPTEGAPSGAFFHEHELASDELHYYLIYVSDASKNVSVTVAWFDPPSPVSSYN-----------------------LLHDLDMFLMSVDARRYYRSNHYDTIATMCGADESCAEKYEFTYENGLADYMNPVERVTVPSSDLEEGYHVVGVRARTLTESDVQAYGLAAAGGGLVLHGMSKNWTDLVLETDSTHGSGLGTDEPDPDGEVNGATPAPSVLVAEGSADDGGAP------TGDSVVITPTSAPVETATGSTSGSGTSMAGDEDGLSGDSTGSGAGVSHLGGGDDDISAAGGIEADVPEDGDLDVDGGGSXXXXXXXXXXXXXXXXXXXXAALLIGAGICLAVRRNKLRSSGRRDETGSFLCPVRNASSSAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------RVVGFYDGGDMPPLEPQRGLPGYATAVASMPEEEGHTIIRDRAGVERMVELTAADESEVSGFYYAVDPGAVETLVSWGISRDFARVALRQTDNDVQEALQMIAEGNMDELLAMDHEEMAREGREAAAAAEAAAAGRHGTMV 1575
            QLAASVPTEGAP GAF+HEHELASDELHYYLIYVSDASK VSVTVAWFDPPSPVSSYN                       LLHDLDMF+MSVDARRYYRSNH+DTIATMC ADESCAEKYEFTYEN LADYMNPVERVTVPSSDLEEGYHVVGVRARTLTESDVQAYG+AAAGGGLVLHGMSKNWTDLVLETDST G+G+                                       TGDSV I PTS PVETATGSTSGSGTSMAGDED  SGDSTGSGAGVSHLGGGDDDISAAGGIE DVPE GDLDVDGG      XXXXXXXXXXXXXXXX   LIGAGICLAVRRNKLRSSGRRDETGSFLCPVRNASSSA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX         RVVGFYDGGDMPPLEPQRGLPGYATAVASMPEEEGHTIIRDRAGVERMVELTAADESEVSGFYYAVDPGAVETLVSWGISRDFARVALRQTDNDVQEALQMIAEGNMDELLAMDHEEMAREGREAAAAAEAAAAGRHGTMV
Sbjct:  931 QLAASVPTEGAPMGAFYHEHELASDELHYYLIYVSDASKTVSVTVAWFDPPSPVSSYNRSSSWAQESMMTFMTFLRLRRPKLLHDLDMFVMSVDARRYYRSNHHDTIATMCDADESCAEKYEFTYENDLADYMNPVERVTVPSSDLEEGYHVVGVRARTLTESDVQAYGVAAAGGGLVLHGMSKNWTDLVLETDSTQGTGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGDSVAIAPTSDPVETATGSTSGSGTSMAGDEDEFSGDSTGSGAGVSHLGGGDDDISAAGGIETDVPEGGDLDVDGG------XXXXXXXXXXXXXXXXXXXLIGAGICLAVRRNKLRSSGRRDETGSFLCPVRNASSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRNHGEEDDRVVGFYDGGDMPPLEPQRGLPGYATAVASMPEEEGHTIIRDRAGVERMVELTAADESEVSGFYYAVDPGAVETLVSWGISRDFARVALRQTDNDVQEALQMIAEGNMDELLAMDHEEMAREGREAAAAAEAAAAGRHGTMV 1485
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14807.3667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTQ1_ECTSI2.650e-24782.17Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7F... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14807contigEcto-sp13_S_contig14807:2354..4327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score731.9
Seed ortholog evalue2.2e-208
Seed eggNOG ortholog2880.D7FTQ1
Model size1578
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
Ec32 ortholog descriptionpeptidase S8 and S53, subtilisin, kexin, sedolisin
Ec32 orthologEc-06_009300.1
Cds size1578
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462790.2707963-CDS-Ecto-sp13_S_contig14807:2353..37571681462790.2707963-CDS-Ecto-sp13_S_contig14807:2353..3757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14807 2354..3757 -
1681462790.2805233-CDS-Ecto-sp13_S_contig14807:4153..43271681462790.2805233-CDS-Ecto-sp13_S_contig14807:4153..4327Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14807 4154..4327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14807.3667.1prot_Ecto-sp13_S_contig14807.3667.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14807 2354..4327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14807.3667.1

>prot_Ecto-sp13_S_contig14807.3667.1 ID=prot_Ecto-sp13_S_contig14807.3667.1|Name=mRNA_Ecto-sp13_S_contig14807.3667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=526bp
QLAASVPTEGAPSGAFFHEHELASDELHYYLIYVSDASKNVSVTVAWFDP
PSPVSSYNLLHDLDMFLMSVDARRYYRSNHYDTIATMCGADESCAEKYEF
TYENGLADYMNPVERVTVPSSDLEEGYHVVGVRARTLTESDVQAYGLAAA
GGGLVLHGMSKNWTDLVLETDSTHGSGLGTDEPDPDGEVNGATPAPSVLV
AEGSADDGGAPTGDSVVITPTSAPVETATGSTSGSGTSMAGDEDGLSGDS
TGSGAGVSHLGGGDDDISAAGGIEADVPEDGDLDVDGGGSGGSGGSGGTT
ITTIAASSAAAALLIGAGICLAVRRNKLRSSGRRDETGSFLCPVRNASSS
AGRAAVGGGGGGGGGSGGGDDDEETDRHHGEEDDRVVGFYDGGDMPPLEP
QRGLPGYATAVASMPEEEGHTIIRDRAGVERMVELTAADESEVSGFYYAV
DPGAVETLVSWGISRDFARVALRQTDNDVQEALQMIAEGNMDELLAMDHE
EMAREGREAAAAAEAAAAGRHGTMV*
back to top

mRNA from alignment at Ecto-sp13_S_contig14807:2354..4327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14807.3667.1 ID=mRNA_Ecto-sp13_S_contig14807.3667.1|Name=mRNA_Ecto-sp13_S_contig14807.3667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1974bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14807:2354..4327- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGGCGGCCTCGGTGCCTACGGAGGGCGCCCCATCGGGCGCGTTCTT
CCACGAGCACGAGCTAGCGTCGGACGAGCTCCACTACTACCTCATTTACG
TGTCGGACGCCAGTAAAAACGTGTCTGTGACGGTGGCGTGGTTCGACCCC
CCGTCCCCTGTGTCGTCGTACAACGTGAGTTTTTTTGCTGTCGCGGGAGG
GTTTCCGCTTGTCGGGGAGGGTTGGGGGGGTGTAGTCGTGTATCGGGGGA
TACGTTTCCGTGCAAGGGGTCGTGTTGTGTTTGTCCGTTCGCCCTCTTGT
CCTCTTTTTTTGTACAGCTAGTGTTGCGGGCACAGTTGGCTTTTGTGGTG
ATCGTGGGCAGAGGTCGAGCAGCTGGACCATGGAGAGAATTGTGACCTTC
CTCCGTCTTGGTGCTCCCAAGGTTGTAAATTCTCGTGCGTGTGACAGCAA
GAACTGACCCCTGCCCCGTCTTCCGTCCTTGCTCTGCTTGTGTTGTTGCT
GTGCTCCTTCAATGCTCGTGTGCCGCTTCACAACCAATACCCCAACGCTG
GGCGGAAACACGCAAAACAGTTGCTCCACGACTTGGACATGTTCCTAATG
TCGGTGGACGCGAGGCGGTACTACCGCTCCAACCACTACGACACGATCGC
GACCATGTGCGGCGCCGACGAGTCCTGCGCCGAGAAGTACGAGTTCACTT
ACGAGAACGGCCTGGCGGACTACATGAACCCGGTCGAGCGGGTCACGGTG
CCGAGCTCCGACCTCGAGGAAGGGTACCATGTCGTGGGCGTGCGGGCGCG
CACCCTCACGGAGTCCGACGTCCAGGCGTACGGGCTCGCGGCCGCTGGCG
GCGGCCTGGTTCTCCACGGCATGTCAAAGAACTGGACGGACCTCGTGCTG
GAGACGGACTCGACCCACGGTAGCGGGTTGGGGACCGACGAGCCCGACCC
CGACGGCGAGGTTAACGGGGCCACGCCGGCCCCGTCCGTGCTGGTTGCGG
AGGGATCGGCCGACGACGGCGGCGCGCCCACGGGGGACAGCGTTGTCATT
ACCCCGACCAGTGCCCCCGTTGAGACGGCCACGGGGAGCACGAGCGGCAG
CGGCACCAGCATGGCCGGCGATGAGGACGGGTTGTCCGGCGACTCGACGG
GGAGCGGCGCCGGGGTGAGCCACCTCGGGGGCGGCGACGACGACATCAGC
GCGGCCGGCGGGATAGAGGCCGACGTGCCCGAGGACGGCGACCTCGACGT
CGACGGCGGCGGGAGCGGCGGGAGCGGCGGGAGCGGCGGGACGACCATCA
CCACCATCGCGGCGTCGTCCGCCGCGGCGGCGCTCCTGATCGGGGCCGGG
ATCTGCCTCGCCGTGCGGCGGAACAAGCTGCGCTCCTCTGGTCGGCGTGA
CGAGACCGGGTCCTTCCTGTGTCCTGTCCGTAACGCCTCCTCGTCCGCGG
GAAGAGCGGCGGTGGGCGGTGGTGGCGGCGGCGGTGGTGGCAGCGGCGGC
GGCGACGACGACGAAGAAACAGACCGGCACCACGGCGAAGAGGACGACCG
TGTTGTCGGGTTCTACGACGGGGGAGACATGCCGCCGCTGGAGCCCCAGC
GAGGGCTGCCGGGTTACGCGACGGCCGTGGCCAGCATGCCGGAGGAGGAG
GGCCACACGATCATCCGAGATCGCGCCGGGGTGGAGCGGATGGTGGAGCT
CACGGCCGCCGACGAGTCCGAGGTGTCGGGTTTCTACTACGCGGTTGATC
CCGGCGCGGTCGAGACGCTGGTATCGTGGGGAATCAGCCGGGACTTCGCC
AGGGTGGCGCTGAGGCAGACGGACAACGATGTCCAGGAGGCCCTGCAGAT
GATAGCCGAGGGGAACATGGACGAGCTCCTGGCCATGGACCACGAAGAGA
TGGCCCGGGAGGGGCGGGAGGCGGCCGCGGCGGCGGAGGCCGCGGCAGCG
GGTCGACACGGGACAATGGTGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14807:2354..4327-

>mRNA_Ecto-sp13_S_contig14807.3667.1 ID=mRNA_Ecto-sp13_S_contig14807.3667.1|Name=mRNA_Ecto-sp13_S_contig14807.3667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1578bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14807:2354..4327- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGGCGGCCTCGGTGCCTACGGAGGGCGCCCCATCGGGCGCGTTCTT
CCACGAGCACGAGCTAGCGTCGGACGAGCTCCACTACTACCTCATTTACG
TGTCGGACGCCAGTAAAAACGTGTCTGTGACGGTGGCGTGGTTCGACCCC
CCGTCCCCTGTGTCGTCGTACAACTTGCTCCACGACTTGGACATGTTCCT
AATGTCGGTGGACGCGAGGCGGTACTACCGCTCCAACCACTACGACACGA
TCGCGACCATGTGCGGCGCCGACGAGTCCTGCGCCGAGAAGTACGAGTTC
ACTTACGAGAACGGCCTGGCGGACTACATGAACCCGGTCGAGCGGGTCAC
GGTGCCGAGCTCCGACCTCGAGGAAGGGTACCATGTCGTGGGCGTGCGGG
CGCGCACCCTCACGGAGTCCGACGTCCAGGCGTACGGGCTCGCGGCCGCT
GGCGGCGGCCTGGTTCTCCACGGCATGTCAAAGAACTGGACGGACCTCGT
GCTGGAGACGGACTCGACCCACGGTAGCGGGTTGGGGACCGACGAGCCCG
ACCCCGACGGCGAGGTTAACGGGGCCACGCCGGCCCCGTCCGTGCTGGTT
GCGGAGGGATCGGCCGACGACGGCGGCGCGCCCACGGGGGACAGCGTTGT
CATTACCCCGACCAGTGCCCCCGTTGAGACGGCCACGGGGAGCACGAGCG
GCAGCGGCACCAGCATGGCCGGCGATGAGGACGGGTTGTCCGGCGACTCG
ACGGGGAGCGGCGCCGGGGTGAGCCACCTCGGGGGCGGCGACGACGACAT
CAGCGCGGCCGGCGGGATAGAGGCCGACGTGCCCGAGGACGGCGACCTCG
ACGTCGACGGCGGCGGGAGCGGCGGGAGCGGCGGGAGCGGCGGGACGACC
ATCACCACCATCGCGGCGTCGTCCGCCGCGGCGGCGCTCCTGATCGGGGC
CGGGATCTGCCTCGCCGTGCGGCGGAACAAGCTGCGCTCCTCTGGTCGGC
GTGACGAGACCGGGTCCTTCCTGTGTCCTGTCCGTAACGCCTCCTCGTCC
GCGGGAAGAGCGGCGGTGGGCGGTGGTGGCGGCGGCGGTGGTGGCAGCGG
CGGCGGCGACGACGACGAAGAAACAGACCGGCACCACGGCGAAGAGGACG
ACCGTGTTGTCGGGTTCTACGACGGGGGAGACATGCCGCCGCTGGAGCCC
CAGCGAGGGCTGCCGGGTTACGCGACGGCCGTGGCCAGCATGCCGGAGGA
GGAGGGCCACACGATCATCCGAGATCGCGCCGGGGTGGAGCGGATGGTGG
AGCTCACGGCCGCCGACGAGTCCGAGGTGTCGGGTTTCTACTACGCGGTT
GATCCCGGCGCGGTCGAGACGCTGGTATCGTGGGGAATCAGCCGGGACTT
CGCCAGGGTGGCGCTGAGGCAGACGGACAACGATGTCCAGGAGGCCCTGC
AGATGATAGCCGAGGGGAACATGGACGAGCTCCTGGCCATGGACCACGAA
GAGATGGCCCGGGAGGGGCGGGAGGCGGCCGCGGCGGCGGAGGCCGCGGC
AGCGGGTCGACACGGGACAATGGTGTAG
back to top