mRNA_Ecto-sp13_S_contig14805.3666.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14805.3666.1
Unique NamemRNA_Ecto-sp13_S_contig14805.3666.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14805.3666.1 vs. uniprot
Match: D8LFY1_ECTSI (Diphthine--ammonia ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY1_ECTSI)

HSP 1 Score: 449 bits (1155), Expect = 2.910e-151
Identity = 234/278 (84.17%), Postives = 243/278 (87.41%), Query Frame = 2
Query:    8 LILKHIHTRTRAKNAQVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDETMVVNHSDDMFAPVGLLRVVKCHTEPKTQPLTGGGISAAENNTGRDNTTGAAVLSMAETAGSGGLVYLSGVRAAARWPGAGGGAAEAAEAAARQAANCLAAARAGLERVGVCLRDVCFVHLYLRDMGLFSAVNEEYCKWFEGENPPSRSCVSVPLPPGCSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP 841
            L+ + +     A   +VASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDET+VVNHSDDMFAPVGLLRVVKCHTEPKT PLTGG ISAA+NNTG+DN TG   LS AE  GSGGLVYLSGVRAAARWPGAG           RQAA+CL AAR GLE +GVCLRDVCFVHLYLRDM LFSAVNEEYCKWFEGENPPSRSCVSVPLP GCSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP
Sbjct:  102 LLAEMVEAGLNAVLVKVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDETVVVNHSDDMFAPVGLLRVVKCHTEPKTPPLTGGSISAADNNTGKDNATGGTALSTAE--GSGGLVYLSGVRAAARWPGAGXXXXXXXXXX-RQAADCLEAARTGLEGIGVCLRDVCFVHLYLRDMRLFSAVNEEYCKWFEGENPPSRSCVSVPLPLGCSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP 376          
BLAST of mRNA_Ecto-sp13_S_contig14805.3666.1 vs. uniprot
Match: A0A835YTU4_9STRA (Diphthine--ammonia ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTU4_9STRA)

HSP 1 Score: 185 bits (469), Expect = 3.030e-50
Identity = 127/285 (44.56%), Postives = 149/285 (52.28%), Query Frame = 2
Query:   53 QVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDETMVVNHSDDMFAPVGLLRVVKCHTEPKTQPLTGGGISAAENNTGRDNTTGAAVLSMAETAGSGGLVYLSGVRAAARWPGAGGGAAEAAEAAARQAANCLAAARAGLERVG--------------------VCLRDVCFVHLYLRDMGLFSAVNEEYCKWFE--GENPPSRSCVSVPLPPGCSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP 841
            +VAS GL+P KHLG+S+ARL+P F +L +R GFHVCGEGGEYETLTLDCP FVR+LVLDET VV HSDDMFAPV LLRVV+C T  K          A  +  G  +   AA L     A S G +++S +                         +  +A  AG                           L DV FVHLYL DM  F+AVN  Y   FE     PPSR+CV   LPP  +VMLD VA RGS     +       R  L VRS+S WAPVCIGP
Sbjct:  117 KVASLGLDPHKHLGKSVARLQPHFLTLAARHGFHVCGEGGEYETLTLDCPAFVRRLVLDETEVVMHSDDMFAPVALLRVVRCSTADKMAEERERDAQAMAS-IGHPDLRAAAELEQL-LADSSGHIHVSSITCPPD--------------------SLPSATSAGXXXXXXXXXXXXXXXXXXXXXXAHDASLADVVFVHLYLADMAHFAAVNAAYAAAFEPAAAAPPSRACVQARLPPPYAVMLDCVAQRGSAP---RPRGPAQDRATLLVRSLSPWAPVCIGP 376          
BLAST of mRNA_Ecto-sp13_S_contig14805.3666.1 vs. uniprot
Match: A0A5D6XTH2_9STRA (Diphthine--ammonia ligase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTH2_9STRA)

HSP 1 Score: 179 bits (455), Expect = 3.260e-48
Identity = 116/288 (40.28%), Postives = 164/288 (56.94%), Query Frame = 2
Query:   53 QVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDETMVVNHSDDMFAPVGLLRVVKCHTEPKTQPLTGGGISAAENNTGRDNTTGAAVLSMAETAGS------------------------GGLVYLSGVRAAARWPGAGGGAAEAAEAAARQAAN-CLAAARAGLERVGVCLRDVCFVHLYLRDMGLFSAVNEEYCKWFEGENPPSRSCVSVPLPPGCSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP 841
            +VAS GL P KHLG+++A L+P F +LH +   +VCGEGGEYE+LTLDCPLF +++V+D + VV HSDD FAPV  L + +CH E K +P +   +++   +T   +       +++E A +                          + +LSGV +A            +A    ++  N      RA LE+  + L DVCFVHLY+RDM  F+ +N+EYC++F    PPSRSCV V   P   V+LD V +RGSG++  K  A+   R VLH+ SIS+WAP CIGP
Sbjct:  123 KVASIGLTPRKHLGKTIATLQPEFLALHEKYQLNVCGEGGEYESLTLDCPLFKKRIVIDSSRVVLHSDDFFAPVAFLVIEECHLEEK-EPASPSQLASRLLSTDHPDRFQLNADTVSEDAIAVQPANALATLAPDDRAFLPHHSQFRNIFHLSGVMSA-----------RSATLTLKEEMNDVFDHVRAALEKESMTLEDVCFVHLYVRDMHSFAQINDEYCRFFSLRMPPSRSCVEVSALPA-RVLLDCVGVRGSGKS--KLLASRVVRDVLHITSISAWAPNCIGP 395          
BLAST of mRNA_Ecto-sp13_S_contig14805.3666.1 vs. uniprot
Match: K3WAR1_GLOUD (Diphthine--ammonia ligase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAR1_GLOUD)

HSP 1 Score: 175 bits (443), Expect = 8.650e-47
Identity = 111/286 (38.81%), Postives = 154/286 (53.85%), Query Frame = 2
Query:   53 QVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDETMVVNHSDDMFAPVGLLRVVKCHTEPKTQPLTGGGIS--------------AAENNTGRDNTTGAAVLSMAETAGSG---------GLVYLSGVRAAARWPGAGGGAAEAAEAAARQAANCLAAARAGLERVGVCLRDVCFVHLYLRDMGLFSAVNEEYCKWFEGENPPSRSCVSVPLPPGCSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP 841
            +VAS GL P KHLG+++  L+  F +L  +   +VCGEGGEYETLTLDCPLF  ++V+D + VV HSDD FAPV  L + KCH E K +P +   ++              + +    +  TT A  L+    A             L +LSG   +            A+    ++       A+  L +  + L DVCFVHLY++DM  F  +N EYCK+F    PPSRSCV V   P   V++D + +RGSGE+  ++ +    R VLHV+SIS+WAP CIGP
Sbjct:  167 KVASIGLTPRKHLGKTIEELQQDFLALQEKYQLNVCGEGGEYETLTLDCPLFKMRIVIDSSRVVLHSDDYFAPVAFLVIEKCHLEDK-EPASPSKLAPRLPISSFVPDLTRSVQEKLQKSGTTSAIALAQTTQADRAFLPAHHQFRNLFHLSGFMCSN----------SASLTLEQEIKEIFDHAKDTLAKESMTLEDVCFVHLYVQDMNQFGQINAEYCKYFGAHMPPSRSCVEVGSLPA-RVLMDCIGIRGSGESKLRQSSRVT-RDVLHVKSISTWAPNCIGP 439          
BLAST of mRNA_Ecto-sp13_S_contig14805.3666.1 vs. uniprot
Match: A0A3R7HKR9_9STRA (Diphthine--ammonia ligase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HKR9_9STRA)

HSP 1 Score: 173 bits (439), Expect = 8.160e-46
Identity = 118/298 (39.60%), Postives = 167/298 (56.04%), Query Frame = 2
Query:    8 LILKHIHTRTRAKNAQVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDETMVVNHSDDMFAPVGLLRVVKCHTEPKTQP---LTGGGISAAEN----NTGR--DNTTGAAVLSMAETAGSGGL---------VYLSGVRAAARWPGAGGGAAEAAEAAARQAANCLAAARAGLERVGVCLRDVCFVHLYLRDMGLFSAVNEEYCKWFEGENPPSRSCVSVPLPPGCS--VMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP 841
            L+ + I +   A   +VAS GL P KHLG+++A L+P F +L  +   +VCGEGGEYETLTLDCPLF +++V+DE   V HSDD   PV  L + +CH E K  P        IS+  +    NT +   N+  A VL+++     G +         ++LSG+ ++       G  + + E    + A+ +A  +  L+  G+ L DVCFVH+Y++DM +F  +N EY ++     PPSRSCV V         V++D  ALRGSGE   K      +R VLHV+SISSWAP CIGP
Sbjct:  143 LLQEMIDSEVEAIVVKVASIGLNPKKHLGKTIAELQPQFMTLKEKYQMNVCGEGGEYETLTLDCPLFKKRIVIDEFHTVLHSDDYITPVAFLSIDECHLEDKEAPNPSQLASRISSPPSTPPANTAKIATNSKTATVLALSPADARGMVPTYSRFRDQLHLSGIMSSKI-----GDESLSLE---EEMADVIAQIKEALKDNGMVLSDVCFVHMYVQDMAMFGQINAEYIRFLGQNLPPSRSCVEVAALANAPARVLVDCFALRGSGEQ--KLLPLRVRRDVLHVQSISSWAPCCIGP 430          
BLAST of mRNA_Ecto-sp13_S_contig14805.3666.1 vs. uniprot
Match: K8YYW5_NANGC (Diphthine--ammonia ligase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YYW5_NANGC)

HSP 1 Score: 172 bits (435), Expect = 3.990e-45
Identity = 122/310 (39.35%), Postives = 158/310 (50.97%), Query Frame = 2
Query:   53 QVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDETMVVNHSDDMFAPVGLLRVVKCHTEPKTQP--------------------------LTGGGISAAENNTGRDNTTGAA--------VLSMAETAGSGGLVYLSGVRAAARWPGAGGGAAEAAEAAARQAANCLAAARAGLERVGVCLRDVCFVHLYLRDMGLFSAVNEEYCKW-FEGENPPSRSCVSVPLP------PGC------SVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP 841
            +V+S GL P KHLG+S+A L P F+ L+ + GFHV GEGGEYETL +D P F R+LVLD+T VV HSDD++ PVGLL + +CH E K +                           L  GG S +  + G      A         +         G ++ +SG           G  +     AA Q   CL   +  L   G+ L DV  VHLYLR M  F+AVN EYC+  F   +PPSRSCV +PL         C       V+LD++AL GSG A+  +  +   RQVLHV+S+S WAPVCIGP
Sbjct:   92 KVSSQGLAPHKHLGKSIAELEPLFKRLNRQHGFHVAGEGGEYETLAIDAPFFKRRLVLDDTEVVIHSDDVYTPVGLLHIHRCHAEFKEESSPTETSKGNEPNRCLVLPLEVAIVRSLADGGPSTSAESLGSQACAVAPGKRARKWRIRPQPHVWRQGRVLNISGYCVPTPRVHFQGADSSTHGEAAGQMRLCLEGVQRVLLEHGLSLHDVVVVHLYLRSMASFAAVNAEYCRAPFHPHHPPSRSCVELPLARPYDDEEACRGWEEVEVLLDVMALAGSGAAM--DAGSFQPRQVLHVKSLSGWAPVCIGP 399          
BLAST of mRNA_Ecto-sp13_S_contig14805.3666.1 vs. uniprot
Match: A0A1W0A4Q7_9STRA (Diphthine--ammonia ligase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4Q7_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.550e-44
Identity = 109/267 (40.82%), Postives = 150/267 (56.18%), Query Frame = 2
Query:   53 QVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDETMVVNHSDDMFAPVGLLRVVKCHTEPKT---QPLTGGGISAAENNTGRDNTTGAAVLSMAETAGS-GGLVYLSGVRAAARWPGAGGGAAEAAEAAARQAANCLAAARAGLERVGVCLRDVCFVHLYLRDMGLFSAVNEEYCKWFEGENPPSRSCVSVPLPPGCSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP 841
            +VAS GL P KHLG S+A L P F  LH +  FH+CGEGGEYETLTLDCPLF +++V+DE  VV HSDDMFAPVGL  +   H E K       T    +A    T     T A  +    T+      + LSGV              + + + + Q  +  ++ +  L +  V L +V FVH+Y+RDM  F+ +N  Y  +F G  PPSRSCV V +    ++ +D +A+RG+G       A   QR+VL+++S+S WAP+CIGP
Sbjct:  162 KVASMGLNPRKHLGHSIADLYPTFLDLHEKYQFHICGEGGEYETLTLDCPLFKKRIVIDEARVVIHSDDMFAPVGLYCIDALHLEDKDIIPHTKTVSHTNATITQTPTTKPTNAKHIPARITSRCFRNQIALSGVICE-----------DTSLSLSDQVHSIFSSIQKYLAQHDVALSNVVFVHIYVRDMAQFAHLNAVYATYFPGLTPPSRSCVQVDMEN--TLQIDCLAIRGAGPCSTITIAT--QREVLYIQSLSEWAPMCIGP 413          
BLAST of mRNA_Ecto-sp13_S_contig14805.3666.1 vs. uniprot
Match: A0A3M6VPE4_9STRA (Diphthine--ammonia ligase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPE4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 7.580e-44
Identity = 117/300 (39.00%), Postives = 161/300 (53.67%), Query Frame = 2
Query:    8 LILKHIHTRTRAKNAQVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDETMVVNHSDDMFAPVGLLRVVKCHTEPKT------------QPLTGGGISAAENNTGRDNTTGAAVLSMAETAGSGGL------VYLSGVRAAARWPGAGGGAAEAAEAAARQAANCLAAARAGLERVGVCLRDVCFVHLYLRDMGLFSAVNEEYCKWFEGENPPSRSCVSVP----LPPGCSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP 841
            L+ + I +   A   +VAS GL P KHLG+++A L+P    L  +   +VCGEGGEYET TLDCPLF +++V+DE+  V HSDD  APV  L + KCH E K             +PL    +S +  NT +   T  A+   + T            V+LSG+ ++         A + + +   +  + +      LE   + L DVCFVHLY+RD+G F+ +N EY +      PPSRSCV V     +P   SV+LD  ALRGSGE   K      +R VLHV+S+S+WAP CIGP
Sbjct:  152 LLQEMIDSEIEAILIKVASIGLHPRKHLGKTIAELQPQLMMLKEKYQMNVCGEGGEYETFTLDCPLFKKRIVIDESHTVLHSDDYVAPVAFLSIDKCHLEDKEPSDPSQLASRIPEPLLSR-LSISAMNTNKKPATVLALCPQSATKFVPAFGQFRDQVHLSGIMSSK--------AGDVSVSLKEEMIDIVNQLETILESQEMVLADVCFVHLYVRDIGAFAQLNAEYIRQLGQNLPPSRSCVEVKALGDVP--ASVLLDCFALRGSGEQ--KLQPLRVRRDVLHVKSLSAWAPCCIGP 438          
BLAST of mRNA_Ecto-sp13_S_contig14805.3666.1 vs. uniprot
Match: A0A329SV09_9STRA (Diphthine--ammonia ligase n=20 Tax=Phytophthora TaxID=4783 RepID=A0A329SV09_9STRA)

HSP 1 Score: 168 bits (425), Expect = 7.580e-44
Identity = 116/306 (37.91%), Postives = 162/306 (52.94%), Query Frame = 2
Query:    8 LILKHIHTRTRAKNAQVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDETMVVNHSDDMFAPVGLLRVVKCHTE-----------------PKTQPLTGGGISAAENNTGRDNTTGAAVLSMAETAGSGGL---------VYLSGVRAAARWPGAGGGAAEAAEAAARQAANCLAAARAGLERVGVCLRDVCFVHLYLRDMGLFSAVNEEYCKWFEGENPPSRSCVSVPLPPG--CSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP 841
            L+ + I +   A   +VAS GL+P +HLG+++A L+P    L  +   +VCGEGGEYET TLDCPLF +++V+DE+  V HSDD  APV  L + KCH E                 P TQP      S+ EN T +   T   +L++   A    +         ++LSG+ ++         A + +     + A+ +A     LE   + L DVCFVHLY++DM  F  +N EY ++     PPSRSCV V         V+LD  ALRGSG  + K  +   +R VLHV+SIS+WAP CIGP
Sbjct:  152 LLQEMIDSDVEAILVKVASIGLQPRRHLGKTIAELQPQLMMLKEKYQMNVCGEGGEYETFTLDCPLFKKRIVIDESHTVLHSDDYIAPVAFLSIDKCHLEDKEPADPSHLASRIPETPPTQP------SSNENTTEKKPAT---MLALTPEAAQSVVPAFGQFRDQLHLSGIMSSK--------AGDESITLEEEMADVIAQLETILESQKMVLADVCFVHLYVQDMSSFGQLNAEYIRYLGQNLPPSRSCVEVKALANVPARVLLDCFALRGSG--VQKLQSLRVRRDVLHVKSISAWAPCCIGP 438          
BLAST of mRNA_Ecto-sp13_S_contig14805.3666.1 vs. uniprot
Match: A0A2D4CLW4_PYTIN (Diphthine--ammonia ligase n=3 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CLW4_PYTIN)

HSP 1 Score: 167 bits (424), Expect = 1.220e-43
Identity = 117/283 (41.34%), Postives = 154/283 (54.42%), Query Frame = 2
Query:   53 QVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLVLDETMVVNHSDDMFAPVGLLRVVKCHTEPKT--------QPLTGGGISAAENNTGRDNT--TGAAVLSMAETAGSGGLV----------YLSGVRAAARWPGAGGGAAEAAEAAARQAANCLAAARAGLERVGVCLRDVCFVHLYLRDMGLFSAVNEEYCKWFEGENPPSRSCVSVPLPPGCSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGP 841
            +VA+ GL+P +HLGRS+A L+P   +L  +   +VCGEGGEYETLTLDCPLF +++V+D + VV HSDD+FAPV  L V +CH E K         + L    + +A     RD    T A  L  A T     +V          Y+SG+   A           A+ +   +  +  A     L    + + DVCFVHL++RDM  F+ +N  YC+      PPSRSCV V   P   V+LD  ALRGSG+A  K      QR VLHV+SIS+WAP CIGP
Sbjct:  167 KVAAIGLKPRRHLGRSIADLQPELLALKDQYQLNVCGEGGEYETLTLDCPLFKKRIVVDASHVVMHSDDLFAPVAFLVVDQCHLEDKDAVDPALLHRALPTPFVPSASTTIDRDTVPRTTAIALQTAATDCPQSIVPALASFRDQFYVSGLLCPAC----------ASLSLEEEMDDVFAQLERLLSEQHMTMEDVCFVHLFVRDMREFARLNAAYCRHVGQFMPPSRSCVEVASLP-TRVLLDCFALRGSGDA--KRAQPRVQRDVLHVQSISAWAPNCIGP 436          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14805.3666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFY1_ECTSI2.910e-15184.17Diphthine--ammonia ligase n=1 Tax=Ectocarpus silic... [more]
A0A835YTU4_9STRA3.030e-5044.56Diphthine--ammonia ligase n=1 Tax=Tribonema minus ... [more]
A0A5D6XTH2_9STRA3.260e-4840.28Diphthine--ammonia ligase n=1 Tax=Pythium brassicu... [more]
K3WAR1_GLOUD8.650e-4738.81Diphthine--ammonia ligase n=1 Tax=Globisporangium ... [more]
A0A3R7HKR9_9STRA8.160e-4639.60Diphthine--ammonia ligase n=3 Tax=Phytophthora ker... [more]
K8YYW5_NANGC3.990e-4539.35Diphthine--ammonia ligase n=3 Tax=Monodopsidaceae ... [more]
A0A1W0A4Q7_9STRA2.550e-4440.82Diphthine--ammonia ligase n=1 Tax=Thraustotheca cl... [more]
A0A3M6VPE4_9STRA7.580e-4439.00Diphthine--ammonia ligase n=1 Tax=Peronospora effu... [more]
A0A329SV09_9STRA7.580e-4437.91Diphthine--ammonia ligase n=20 Tax=Phytophthora Ta... [more]
A0A2D4CLW4_PYTIN1.220e-4341.34Diphthine--ammonia ligase n=3 Tax=Pythium insidios... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14805contigEcto-sp13_S_contig14805:2..3789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size844
Hectar predicted targeting categoryother localisation
Exons5
Cds size843
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462790.1901827-CDS-Ecto-sp13_S_contig14805:1..541681462790.1901827-CDS-Ecto-sp13_S_contig14805:1..54Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14805 2..54 -
1681462790.2007844-CDS-Ecto-sp13_S_contig14805:506..6511681462790.2007844-CDS-Ecto-sp13_S_contig14805:506..651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14805 507..651 -
1681462790.2124805-CDS-Ecto-sp13_S_contig14805:2232..24651681462790.2124805-CDS-Ecto-sp13_S_contig14805:2232..2465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14805 2233..2465 -
1681462790.226347-CDS-Ecto-sp13_S_contig14805:2675..28671681462790.226347-CDS-Ecto-sp13_S_contig14805:2675..2867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14805 2676..2867 -
1681462790.2363372-CDS-Ecto-sp13_S_contig14805:3569..37891681462790.2363372-CDS-Ecto-sp13_S_contig14805:3569..3789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14805 3570..3789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14805.3666.1prot_Ecto-sp13_S_contig14805.3666.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14805 2..3789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14805.3666.1

>prot_Ecto-sp13_S_contig14805.3666.1 ID=prot_Ecto-sp13_S_contig14805.3666.1|Name=mRNA_Ecto-sp13_S_contig14805.3666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=281bp
MLFNSKTHTYTHPREKRTGRVVRAGAIQAPRALSRSPSALLRVAPLPLRL
PRMRRRGRVRNPHARLPSVRQEAGARRNHGGEPLGRHVRPRGTPEGGQVP
HRAENAAPHRRRHKRCRKQHRQRQHHGRRRTIDGGDGRIGRTGLPLRGSR
CRTVAGGGGGRSGSGGGGGEASGELPGGGARGSRTCRRVSPRRVLRAPIL
AGHGALLSRQRGVLQVVRGREPAVEKLRVCPAAAGLLRHAGPRGPPWKRR
GSGEGRGGLRSETGVACAQYILLGPCVHRPL
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mRNA from alignment at Ecto-sp13_S_contig14805:2..3789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14805.3666.1 ID=mRNA_Ecto-sp13_S_contig14805.3666.1|Name=mRNA_Ecto-sp13_S_contig14805.3666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3788bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14805:2..3789- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTATTTAATTCTAAAACACATACATACACGCACCCGCGCGAAAAACG CACAGGTCGCGTCGTTCGGGCTGGAGCCATCCAAGCACCTCGGGCGCTCT CTCGCTCGCCTTCGGCCCTTCTTCGAGTCGCTCCACTCCCGCTGCGGCTT CCACGTATGCGGCGAAGGGGGAGAGTACGAAACCCTCACGCTCGACTGCC CTCTGTTCGTCAGGAAGCTGGTAAGCATGACGATGATGAACCCTGCAGTG GTTGCCACACACACACCCCGTCCCCCAGCGATGGAAGTTGCACTGTTTTG ACGTGGACAGGGTGAGCTCGCTCTGACAGTTGTATTCTGGAGGGGTGTGG ATGGAAAAACGCCGGGGGTGCGTGTGTGTCGAACACGTCCCCTGTTTTGT TCTGCGTTGACCGGGCGTGCGATTAGGGAAGGCTCTCTCTCAGCTGACCT GATGGTTTGTCCTTACCCTGGCAAGACGCAACATCGATGGATCTCACAAT TTGGATACCCCTTCCCCCCCCCTCCAGTTGGTCGTGTTTGGCTCGACGAA AGGATCGTTGCTTAACCACCTAGAACTTATTAATTTATGTCCGTCAATAT CCTGGTCAGCCTTTGGCGACGGAATGTGCTTTTCTTTACCTCGAGTCGTA AGGTGCGGAACACGAGGGATCTAATAGGTGGAGGTCAGAACCACCTTCGA CGTGATTGCAGCAGCAATACTAACAAAAGACCGATCAAGCCAACAGTCCA AGCAACGGTCGAGCAGCAAATCAAGAAGCCAAACCGACGACAATACAAAA GGCCGATCGAGTTAACAGTGAAGCAACAAGCAAGCAGCAATTAACATAAC ATAAACCAACGAAACCAACTACAACAACAGCAACAACAACAACAACAACA ACAACAACAACAACAACAACAGGTGCTCGACGAAACCATGGTGGTGAACC ACTCGGACGACATGTTCGCCCCCGTGGGACTCCTGAGGGTGGTCAAGTGC CACACCGAGCCGAAAACGCAGCCCCTCACCGGCGGCGGCATAAGCGCTGC CGAAAACAACACCGGCAGAGACAACACCACGGGCGCCGCCGTACTATCGA TGGCGGAGACGGCAGTGTCAAAGGATGATGCTCCTTCCACCGCCGCCGCC GCCGCCGCCGCTACTGCTGCTGCTGCTGCTGCTACCACGGGTAGTACGGC TATCGGAGGCGGCGGCGGTGGCAGCGACGGGGGCACCATAGGCAAGGACG CCGTTCCTGAATCGGTGTCATCGCCACCTCCTCGTCCCTCTTCGGTATCG TGCTGCTTGCCGTACGTGCACGAGGGATCGGGAGGACTGGTCTACCTCTC CGGGGTTCGCGCTGCCGCACGGTGGCCGGGGGCGGGGGGGGGCGCAGCGG AAGCGGCGGAGGCGGCGGCGAGGCAAGCGGCGAACTGCCTGGCGGCGGCG CGCGCGGGTCTCGAACGTGTCGGCGTGTGTCTCCGAGACGTGTGCTTCGT GCACCTATACTTGCGGGACATGGGGCTCTTCTCAGCCGTCAACGAGGAGT ACTGCAAGTGAGATAGATACATGTGGTTTGCTCTAGAGAAAATGTTCATT GCACACAACTACTTGGTATGCTCTGGCCATCAGCGAGGAGTGCAGCAAAT GAGACACATGTGGTCAGAAAATACGTATTTGGGGCAGAGATGCATGTAGA AAAAAAGGTTTATTGCACACAACTTACGAGGTCCGTTTTTCGTCGTCCAC GAGGGAGTGCTGCAAACGAGATAGATCAAAAGCTATACAATACAAAGCTA TTGTTGTTGCTTGCAGGGGGTCCTGAAGGGTTAACTTCTTCTATGACGAA GTATCCCTCCGTAGGTCTGGGTTGTATGCATGCAGGGATGTCGGATGTTG TGTTGGGTGGGTGTTGGGTGGTAACAGCAGACTTCGGTACGGCCTGGCCT GGTCGCTTTGAGTGCGTCGAGTCGTATGAATACCGTAAACGTCGGAGTTT CCCCCCCCTAGTAGAGTTTTCCCCTCCCCCCGTTACCTTTTGGGCCTGGA AGCATGGTTTCTTTGATTTAGCCCCGGGGTATATCGTTTTCGACCAAAAA ATAAATCCCCCCGGGTATTTCAATTTCCCCCCGGGGTACCAGTTTTCCCA CGAGTTCCCCCCGAGAGGGATTTATTTCTCTAATTTTCTGAGTTGATTTT GTTGCATCGCGGAGCACAAAATGCATGATATGGGACGGAAAATTCATTTA CAGATCTGCGCTTCGAGCGAGATTAAGGTGTACCGTTTGTCACTGGAAGG CGGGCCCTTCCTCTTCTTGGAATCACCTTCGGGACGAGACAAACTCCCTC GGCTGCTGTTCTCCTTGCTGTCTTCTTTCTCTTCGCCTTCGTTGCCCTTA CGTTCCTCCTCCCTCTGCTTGTTGAACGCTTACTCGTAAACCTTATCCAT CTCAGTTCGCCACTCTCTGTGTGTTTGGTATGTGGACCATCATTTTTTTT GCACAACCTCCCGGGGGGGGGCTTCCCGACGGTGTAGCGTTGGGAAAATA AAAAGTAACCCTCCCCCGGTACGTCAATTGCCCCCCGAGGGGTTTGGTTT CAGAAAAAAAAACGATCCTCTCCCCGGGGGGAAAACTCCGCCGTTTGCGG TACCTTCAAGGGGGACTTTGTTTCTTCACCAGCTTCCCCGATGCGGCAAG TGTTCTTTCTTGCGCCCCGCTTACAACGCGCACGTCGAAGGCATACTCAG GCATATTGTGGGGTGTATGGTAGTTCCTTGCTGCTCGTGCATGGCGTGTC ATTCTTCGTTGTTCATCACGAAAGAGAGAGGGGGGCGAAGATAGAGATAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAAAGAG AGAGAGAGGTAAGAATGTATTGGAAGCATAAGAGAGAGAGTGGGAGAGAG GGGAAAGTAAGAGAGTAAAAGACGTAAGAGATACCGACATATATAGAGAA GGAGAAGGCATAGGAGAGATGGAGAGAGAGATGGACAGAGGGAGAGCGAC AGAGCGACAGAGAGTCAGAGACAGACACAGAGACAGAGGCAGACAGAGTG AGAAAGTCTAACAAGACAAAAATGCGCAATCCGAGCAGGTGGTTCGAGGG AGAGAACCCGCCGTCGAGAAGCTGCGTGTCTGTCCCGCTGCCGCCGGGCT GCTCCGTCATGCTGGACCTCGTGGCCCTCCGTGGAAGCGGAGAGGCTCTG GCGAAGGAAGGGGCGGCCTGCGCTCAGAGACAGGTACTGTACCCTTGAGG TCATGGTTTGGAGGCACACTAGTTTGTGTTCGTGATTTTTGCTTCAATTG TGCGCTTGGTTGTGCTCGTTTCGGTGTGCGAATGTGGCCGGGGTTTGTGC TTTCTATCCTCGAGTTTCGTCAAAGTAGGATCGATTTCATCGAGTTCGTA TGCATAAGCTCGTAGTAGTTTTTTCAAGACCCGTGGGTAGAAGAACCCTG GCTGGCTTTGGGTACATTCAGCCAAGTCGACTTCACTCCCCGGCTTCCTC CTCTCCCGGCCTTCCTTCCTACCCCTCCGTTTTCACCACTCCCTGTCTTC TCCGCTGGGCGTCACCCCTCCTAGATATCGCTCCGTCCGGACATTGTTGG GATGCGAGGTCAATGGTCTATAGACTACGACATGCGTTTCAATAAGTACC CCCCCTCCTTCCACTACTTTTTAATTTAAAAACAGGTGTTGCATGTGCGC AGTATATCCTCCTGGGCCCCTGTGTGCATCGGCCCTTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14805:2..3789-

>mRNA_Ecto-sp13_S_contig14805.3666.1 ID=mRNA_Ecto-sp13_S_contig14805.3666.1|Name=mRNA_Ecto-sp13_S_contig14805.3666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14805:2..3789- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTATTTAATTCTAAAACACATACATACACGCACCCGCGCGAAAAACG
CACAGGTCGCGTCGTTCGGGCTGGAGCCATCCAAGCACCTCGGGCGCTCT
CTCGCTCGCCTTCGGCCCTTCTTCGAGTCGCTCCACTCCCGCTGCGGCTT
CCACGTATGCGGCGAAGGGGGAGAGTACGAAACCCTCACGCTCGACTGCC
CTCTGTTCGTCAGGAAGCTGGTGCTCGACGAAACCATGGTGGTGAACCAC
TCGGACGACATGTTCGCCCCCGTGGGACTCCTGAGGGTGGTCAAGTGCCA
CACCGAGCCGAAAACGCAGCCCCTCACCGGCGGCGGCATAAGCGCTGCCG
AAAACAACACCGGCAGAGACAACACCACGGGCGCCGCCGTACTATCGATG
GCGGAGACGGCAGGATCGGGAGGACTGGTCTACCTCTCCGGGGTTCGCGC
TGCCGCACGGTGGCCGGGGGCGGGGGGGGGCGCAGCGGAAGCGGCGGAGG
CGGCGGCGAGGCAAGCGGCGAACTGCCTGGCGGCGGCGCGCGCGGGTCTC
GAACGTGTCGGCGTGTGTCTCCGAGACGTGTGCTTCGTGCACCTATACTT
GCGGGACATGGGGCTCTTCTCAGCCGTCAACGAGGAGTACTGCAAGTGGT
TCGAGGGAGAGAACCCGCCGTCGAGAAGCTGCGTGTCTGTCCCGCTGCCG
CCGGGCTGCTCCGTCATGCTGGACCTCGTGGCCCTCCGTGGAAGCGGAGA
GGCTCTGGCGAAGGAAGGGGCGGCCTGCGCTCAGAGACAGGTGTTGCATG
TGCGCAGTATATCCTCCTGGGCCCCTGTGTGCATCGGCCCTTA
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