mRNA_Ecto-sp13_S_contig14781.3648.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14781.3648.1
Unique NamemRNA_Ecto-sp13_S_contig14781.3648.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14781.3648.1 vs. uniprot
Match: A0A6H5L9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9V8_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 5.090e-55
Identity = 189/224 (84.38%), Postives = 190/224 (84.82%), Query Frame = 1 
Query: 1126 MVVPTFPPGPLQAQXXXXXXXXXXXXXXXXXGGVNN-AMTPHHMAGVVPPHVMAGARGPMPPQQFPQPMYRAAMGQPPQMFLQPPRMPMAPGQIQGFPPQGIQVVGQPGGAAPPPGSPFYHGQMQMAQXXXXXXPXXXPGXXXXXXXXXXXXXXXGQQQQXXXXXXXXXXXXXXXXXXXRGFPMMPGXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGGMGGMRP 1794
            MVVPTFPPGPLQAQXXXXXXXXXXXXXXXXX      AM PHHMAGVVPPHVMAGARGPMPPQQFPQPMYRAAMGQPPQMF+QPPRMPMAPGQIQGFPPQGIQVVGQPGGAAPPPGSPFYHGQMQMA XXXXXX XXX  XXXXXXXXXXXXXXXG    XXXXXXXXXXXXX      RGFPMMPG         XXXXXXXXXXXXXX    NAGGMGGMRP
Sbjct:    1 MVVPTFPPGPLQAQXXXXXXXXXXXXXXXXXXXXXXXAMNPHHMAGVVPPHVMAGARGPMPPQQFPQPMYRAAMGQPPQMFMQPPRMPMAPGQIQGFPPQGIQVVGQPGGAAPPPGSPFYHGQMQMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXX------RGFPMMPGHPGAGGAPPXXXXXXXXXXXXXXRPG-NAGGMGGMRP 217
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BLAST of mRNA_Ecto-sp13_S_contig14781.3648.1 vs. uniprot
Match: D7FVW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW5_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 9.020e-38
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 
Query: 1279 MAGARGPMPPQQFPQPMYRAAMGQPPQMFLQPPRMPMAPGQIQGFPPQGIQVVGQPGGAAPPPGSPFYHGQMQ 1497
            MAGARGPMPPQQFPQPMYRAAMGQPPQMF+QPPRMPMAPGQIQGFPPQGIQVVGQPGGA PPPGSPFYHGQMQ
Sbjct:    1 MAGARGPMPPQQFPQPMYRAAMGQPPQMFMQPPRMPMAPGQIQGFPPQGIQVVGQPGGAVPPPGSPFYHGQMQ 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14781.3648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L9V8_9PHAE5.090e-5584.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVW5_ECTSI9.020e-3897.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14781contigEcto-sp13_S_contig14781:3..3068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1794
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_002390.1
Cds size1794
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462788.3191028-CDS-Ecto-sp13_S_contig14781:2..2991681462788.3191028-CDS-Ecto-sp13_S_contig14781:2..299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14781 3..299 -
1681462788.3302429-CDS-Ecto-sp13_S_contig14781:700..8381681462788.3302429-CDS-Ecto-sp13_S_contig14781:700..838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14781 701..838 -
1681462788.3413777-CDS-Ecto-sp13_S_contig14781:1217..22161681462788.3413777-CDS-Ecto-sp13_S_contig14781:1217..2216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14781 1218..2216 -
1681462788.349751-CDS-Ecto-sp13_S_contig14781:2708..30681681462788.349751-CDS-Ecto-sp13_S_contig14781:2708..3068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14781 2709..3068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14781.3648.1prot_Ecto-sp13_S_contig14781.3648.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14781 3..3068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14781.3648.1

>prot_Ecto-sp13_S_contig14781.3648.1 ID=prot_Ecto-sp13_S_contig14781.3648.1|Name=mRNA_Ecto-sp13_S_contig14781.3648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=598bp
MAAAKPPLPSPSSSARGGTGAGSAAAEAAAEKKKSALRASAKEWKPNPTA
KEWKPPGGAPTAVAPAAAASASPVVVAAAAVSTPQVMTPTAVSIASPSPR
GAGGGGFGTGGRGVMSGGSMGYGGGGHNADEHGHMHQQQHHHNHHHQPHQ
QQQLHHHQFNHPQHVPHQQQQQQPQQQQQQQQHHHPQQFQHGSGGSGGGG
GGGSHAHPHQQPHAHPQHHQPPQQQQQQPPPHQQHHHPPQQHPHPPHQPN
QHHHGSQQGSPQNSSQQHPPQQQSPHRQQPPPQQQQPQQQQQQQPPHPSH
HAQQQQQQPQAQQQTHQPRSQQQQQQQQQQQQQQQPQQHPSTPQQHPSTP
QQQAMPPPVPQGVTGPPAVGPGGAQMVVPTFPPGPLQAQQQQMAAAAAAA
VATAGAGGVNNAMTPHHMAGVVPPHVMAGARGPMPPQQFPQPMYRAAMGQ
PPQMFLQPPRMPMAPGQIQGFPPQGIQVVGQPGGAAPPPGSPFYHGQMQM
AQQQQQQQPQQQPGQPQLQLPPPQIPVPPGQQQQQQPQQQQQQQQPQQQQ
QQQRGFPMMPGHPGAGGAPPPPHPGPPQTPPQPQRPGTNAGGMGGMRP
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mRNA from alignment at Ecto-sp13_S_contig14781:3..3068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14781.3648.1 ID=mRNA_Ecto-sp13_S_contig14781.3648.1|Name=mRNA_Ecto-sp13_S_contig14781.3648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3066bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14781:3..3068- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCGGCGAAGCCGCCGCTGCCCTCTCCGTCTTCCTCCGCCAGGGG
CGGCACCGGCGCCGGGAGCGCAGCGGCGGAAGCGGCGGCGGAGAAGAAGA
AATCGGCCTTGCGGGCCAGTGCGAAGGAGTGGAAGCCGAACCCGACGGCC
AAGGAGTGGAAGCCTCCGGGGGGAGCGCCGACGGCGGTCGCTCCTGCGGC
TGCTGCCTCCGCGTCGCCGGTTGTCGTTGCCGCGGCGGCGGTGTCCACGC
CGCAGGTGATGACGCCTACTGCGGTTAGCATCGCGAGCCCGTCGCCCCGA
GGGGCCGGGGGAGGGGGGTTCGGGACCGGGGGCAGGGGCGTCATGTCCGG
TGGATCGATGGTGAGTGTGTTGTGCTGGCTGCGATAGCATAATTGAACGC
GGTTTTCTCGCGAAATCGGGTTTTTCGTTGGCCGATGTCCGGTTGAATGG
TTTGCGGCAGAGAGTTGCGACGGCGGAAGGTTATTGGTCTGCAGCAACGT
TGAGAAGCGTACACCACCTGGATGTTATCCGGCTCTTTCGTTTGTGTCAT
GTGCTCTGTCTGCGTCACTGTTTTGATTATGCCGCATGCGCTTGTGTCTG
CCTGCGGTACTTGCCTGTGCTGTGATTACAGCGGCCTGGTTTGTCGGCCC
CTTTTTTCGCACTCCCATGTCGCCAGCATCGGACTAAGATGCTTGCGGAA
GTTGCAATATTTGAAATTTTTGGAATTTTGGGGCGCAAATGATGGGATTT
CGTCTGTAGCTCTTGTGTCGGGGAAGTACGACCAATCGCCTTTTGAAGTA
CCGCTGTTTTGTTTGCAAGTGTCTTAGCTTACCTCTGCGTTATTCCCTGC
AGGGTTACGGAGGCGGTGGCCACAACGCCGATGAGCACGGCCACATGCAT
CAGCAGCAACACCACCACAACCACCACCACCAGCCTCATCAGCAACAACA
GCTACACCACCACCAGTTCAACCACCCTCAGCACGTGCCGCATCAGCAGC
AGCAGCAGCAGCCCCAGCAGCAGCAGCAGCAGCAACAGCACCACCACCCC
CAACAATTCCAGCATGGAAGCGGGGGTAGTGGTGGGGGTGGCGGTGGTGG
TAGTCATGCACACCCCCATCAACAACCGCACGCGCACCCTCAACACCACC
AACCGCCTCAGCAGCAGCAGCAGCAGCCGCCGCCGCACCAACAGCACCAC
CACCCGCCGCAGCAGCACCCGCACCCTCCTCATCAGCCTAACCAGCACCA
CCATGGCTCGCAGCAGGGCTCCCCGCAGAACAGCTCTCAGCAGCATCCTC
CCCAGCAGCAATCTCCCCACCGCCAACAGCCGCCGCCGCAGCAGCAGCAG
CCGCAACAGCAGCAGCAGCAGCAGCCGCCACACCCGTCGCACCACGCACA
ACAACAGCAGCAGCAGCCACAGGCGCAGCAGCAGACCCACCAACCCCGCT
CCCAGCAGCAGCAGCAGCAACAACAGCAACAACAGCAGCAGCAGCAGCCC
CAACAACACCCGTCCACGCCTCAGCAACACCCTTCGACGCCGCAACAGCA
GGCGATGCCCCCCCCCGTCCCGCAGGGAGTCACGGGCCCTCCGGCAGTCG
GGCCGGGGGGCGCGCAGATGGTCGTCCCCACTTTCCCGCCGGGGCCTTTG
CAGGCGCAGCAGCAGCAGATGGCGGCAGCGGCGGCGGCGGCAGTAGCTAC
GGCGGGGGCGGGGGGGGTCAACAACGCGATGACCCCGCACCACATGGCAG
GCGTTGTGCCGCCGCACGTGATGGCGGGGGCGCGGGGACCCATGCCGCCT
CAGCAGTTCCCGCAGCCCATGTATCGGGCGGCGATGGGGCAGCCTCCGCA
GGTGTGTGTTGGTCAGCTGGGGGTGGTTGGGTGGGTGGGTGGGTGGGTGG
GGGGGGGGGGAAGCCCGTAGGTTGCTTGGAAGATGGAAAGTTGCGCCACG
TCTCTTTTGCGGACGCCTGCTGAGCCACCTGTCGAGTTGCATGGGATGAA
CGCGGGTAAAACTGTATGTGGTGAACCTCCTCCCCCGGTGGTTTGATAAG
CCCCTCGCAGCACAGCAGACGTGTGCGCAGAAGGGTGTCAAGCGACCGTG
GCTTTCTCGTGGTAGATGTCCATCGCGCTGGCTGGATATGTGGTGATCAA
CACCAACCTCCCCCCACTCCCGTCTGCCCGCCACCTCTTGATCGTTTTTT
ACCCCCCTTCCTTTCCCCTCGAAAATCCAGATGTTCTTGCAACCGCCTCG
CATGCCGATGGCTCCGGGGCAGATCCAAGGCTTCCCGCCGCAGGGGATTC
AGGTCGTGGGCCAGCCGGGGGGGGCGGCCCCCCCCCCGGGTTCTCCCTTC
TATCACGGCCAGATGCAGGTATTTAGGTCGTGGGGATTGTTGTAGATGAA
ACACGACCATAAGGATGTTTCCACAACGTGCCACGGTACTTCGGTTTTTA
GTGTGAAGGAGGGTTGTGCGTATTGACGGCACCATGTGTTAGTAGCCGTG
TTGTGGCAAGCTGAGGCCTGACGGGCAACGTTGTGCACCGGAGAAGGGGA
TTGTAAAAGGAAGTACGTGGTCGGTACAGCTGTACGAAGGATAGGGGGGT
TGGATGAGAGCATCCGCGCGCACCCTATCACCCATGTTATTGGATCGTTT
TGGGGATTTGTACGAAAGCACGAGGTGTATTGCGTGCCTGGCGTGCACCC
GGGTGCTGAAAGCCACGACTCCCTTCACTTGACGCGGTTGTTCCTCCGGT
TCCTACCCTCCGCCCTCAGATGGCCCAGCAGCAGCAGCAGCAGCAGCCGC
AGCAGCAACCGGGACAGCCGCAGCTTCAGCTGCCGCCACCACAGATCCCG
GTGCCGCCAGGCCAACAACAGCAGCAGCAGCCGCAGCAGCAGCAGCAGCA
GCAGCAGCCGCAGCAGCAGCAACAGCAGCAGAGAGGTTTCCCGATGATGC
CGGGACACCCCGGGGCGGGCGGGGCTCCCCCGCCCCCCCACCCCGGCCCC
CCCCAGACACCTCCTCAGCCGCAGAGACCGGGGACGAACGCGGGCGGAAT
GGGCGGCATGCGGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14781:3..3068-

>mRNA_Ecto-sp13_S_contig14781.3648.1 ID=mRNA_Ecto-sp13_S_contig14781.3648.1|Name=mRNA_Ecto-sp13_S_contig14781.3648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1794bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14781:3..3068- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCGGCGAAGCCGCCGCTGCCCTCTCCGTCTTCCTCCGCCAGGGG
CGGCACCGGCGCCGGGAGCGCAGCGGCGGAAGCGGCGGCGGAGAAGAAGA
AATCGGCCTTGCGGGCCAGTGCGAAGGAGTGGAAGCCGAACCCGACGGCC
AAGGAGTGGAAGCCTCCGGGGGGAGCGCCGACGGCGGTCGCTCCTGCGGC
TGCTGCCTCCGCGTCGCCGGTTGTCGTTGCCGCGGCGGCGGTGTCCACGC
CGCAGGTGATGACGCCTACTGCGGTTAGCATCGCGAGCCCGTCGCCCCGA
GGGGCCGGGGGAGGGGGGTTCGGGACCGGGGGCAGGGGCGTCATGTCCGG
TGGATCGATGGGTTACGGAGGCGGTGGCCACAACGCCGATGAGCACGGCC
ACATGCATCAGCAGCAACACCACCACAACCACCACCACCAGCCTCATCAG
CAACAACAGCTACACCACCACCAGTTCAACCACCCTCAGCACGTGCCGCA
TCAGCAGCAGCAGCAGCAGCCCCAGCAGCAGCAGCAGCAGCAACAGCACC
ACCACCCCCAACAATTCCAGCATGGAAGCGGGGGTAGTGGTGGGGGTGGC
GGTGGTGGTAGTCATGCACACCCCCATCAACAACCGCACGCGCACCCTCA
ACACCACCAACCGCCTCAGCAGCAGCAGCAGCAGCCGCCGCCGCACCAAC
AGCACCACCACCCGCCGCAGCAGCACCCGCACCCTCCTCATCAGCCTAAC
CAGCACCACCATGGCTCGCAGCAGGGCTCCCCGCAGAACAGCTCTCAGCA
GCATCCTCCCCAGCAGCAATCTCCCCACCGCCAACAGCCGCCGCCGCAGC
AGCAGCAGCCGCAACAGCAGCAGCAGCAGCAGCCGCCACACCCGTCGCAC
CACGCACAACAACAGCAGCAGCAGCCACAGGCGCAGCAGCAGACCCACCA
ACCCCGCTCCCAGCAGCAGCAGCAGCAACAACAGCAACAACAGCAGCAGC
AGCAGCCCCAACAACACCCGTCCACGCCTCAGCAACACCCTTCGACGCCG
CAACAGCAGGCGATGCCCCCCCCCGTCCCGCAGGGAGTCACGGGCCCTCC
GGCAGTCGGGCCGGGGGGCGCGCAGATGGTCGTCCCCACTTTCCCGCCGG
GGCCTTTGCAGGCGCAGCAGCAGCAGATGGCGGCAGCGGCGGCGGCGGCA
GTAGCTACGGCGGGGGCGGGGGGGGTCAACAACGCGATGACCCCGCACCA
CATGGCAGGCGTTGTGCCGCCGCACGTGATGGCGGGGGCGCGGGGACCCA
TGCCGCCTCAGCAGTTCCCGCAGCCCATGTATCGGGCGGCGATGGGGCAG
CCTCCGCAGATGTTCTTGCAACCGCCTCGCATGCCGATGGCTCCGGGGCA
GATCCAAGGCTTCCCGCCGCAGGGGATTCAGGTCGTGGGCCAGCCGGGGG
GGGCGGCCCCCCCCCCGGGTTCTCCCTTCTATCACGGCCAGATGCAGATG
GCCCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCAACCGGGACAGCCGCA
GCTTCAGCTGCCGCCACCACAGATCCCGGTGCCGCCAGGCCAACAACAGC
AGCAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCAGCAA
CAGCAGCAGAGAGGTTTCCCGATGATGCCGGGACACCCCGGGGCGGGCGG
GGCTCCCCCGCCCCCCCACCCCGGCCCCCCCCAGACACCTCCTCAGCCGC
AGAGACCGGGGACGAACGCGGGCGGAATGGGCGGCATGCGGCCC
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