mRNA_Ecto-sp13_S_contig14776.3645.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KG87_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG87_9PHAE) HSP 1 Score: 271 bits (693), Expect = 2.490e-85 Identity = 140/203 (68.97%), Postives = 158/203 (77.83%), Query Frame = 2
Query: 200 GGSRRVQGDDICCFCRERKT*SSKRNQGYGGHRGVRNVEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKA 802
GGS VQG+DICC CRER+T S R QG GG R VRNVEEGIGF+D+LHGP DAGTKLKVKF GDIGLRE R R DDED +FKC+CG ECEDRV V+AEC YK ER VY TEL K + + +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID L KT FSH+WQ KERLAIGDRSC NAPS RGRVVN LTAKA
Sbjct: 204 GGSTGVQGEDICCLCRERRTDSKGRIQGQGGSRSVRNVEEGIGFEDFLHGPMDAGTKLKVKFSVGDIGLRELRRGHRTVDDEDDEFKCDCGFECEDRVDVLAECPWYKKERGVYVTELRKTDGTYREMFEAWNREERKVAVLGHRRWVEKAGRDIVRIDRLEKTFFSHVWQSGKERLAIGDRSCGKNAPSSRGRVVNDLTAKA 406
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE) HSP 1 Score: 271 bits (692), Expect = 3.610e-84 Identity = 134/175 (76.57%), Postives = 150/175 (85.71%), Query Frame = 2
Query: 311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKTSRVTPP 829
++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ + +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID LGKT SHLWQ RKERLAIGDRSC NNAPS RGRVVNGLTAKACKT RV PP
Sbjct: 279 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTQRVRPP 453
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE) HSP 1 Score: 264 bits (675), Expect = 1.260e-81 Identity = 136/198 (68.69%), Postives = 156/198 (78.79%), Query Frame = 2
Query: 224 DDICCFCRERKT*SSKRNQGYGGHRGVRNVEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
+ I C ER+ K ++ G ++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ + +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID LGKT SHLWQ RKERLAIGDRSC NNAPS RGRVVNGLTAKACKT
Sbjct: 301 EKISVACAEREQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 498
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE) HSP 1 Score: 249 bits (636), Expect = 4.130e-80 Identity = 126/169 (74.56%), Postives = 141/169 (83.43%), Query Frame = 2
Query: 311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R D+ED +FKC+CG ECEDRVHVVAE YK EREVY TEL K++ + +MFEAW+ +E+ +A+LGHR+WVEKAG I RID LGKT SHLWQ RKERLA GDRSC NNAPS RGRVVNGLTAKACKT
Sbjct: 2 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAERPWYKKEREVYVTELEKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRGIVRIDRLGKTFLSHLWQSRKERLAFGDRSCGNNAPSSRGRVVNGLTAKACKT 170
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5J590_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J590_9PHAE) HSP 1 Score: 256 bits (654), Expect = 5.150e-80 Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 2
Query: 311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R D+ED +FKC+CG ECEDRVHVVAEC LYK ERE+Y TELGK++ + +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID LGKT SHLWQ RKERLAIGDRSC NNAPS RGRVVNG TA ACKT
Sbjct: 204 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKERELYMTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGQTAMACKT 372
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KMG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG6_9PHAE) HSP 1 Score: 255 bits (652), Expect = 7.420e-80 Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 2
Query: 311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ + +MFEAW+ +E+ +A++GHR+WVEKAG +I RID LGKT SHLWQ RKERLAIGDRSC NNAPS G VVNGLTAKACKT
Sbjct: 193 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSGGCVVNGLTAKACKT 361
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KBA0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBA0_9PHAE) HSP 1 Score: 253 bits (645), Expect = 1.460e-79 Identity = 129/170 (75.88%), Postives = 144/170 (84.71%), Query Frame = 2
Query: 311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGL-GKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
+EEGI FKDYLHG DAGTKLKVKFRTGDIGLRER RR R D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK + + T+MFEAW+ +E+ +A+LGHR+WVEKAG +I RID L GKTL SHLW+ RKERLAIGDRSC NNAPS RGRVVNGLTAK CKT
Sbjct: 135 LEEGIRFKDYLHGLMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKTDRTHTEMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLIGKTLLSHLWRSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 304
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5JB24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB24_9PHAE) HSP 1 Score: 258 bits (660), Expect = 3.590e-79 Identity = 128/169 (75.74%), Postives = 144/169 (85.21%), Query Frame = 2
Query: 311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ + +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID LGKTL SHLWQ RKERLA GDRSC NNAPS RGRVVNGLT K CKT
Sbjct: 349 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTLLSHLWQSRKERLASGDRSCGNNAPSSRGRVVNGLTVKTCKT 517
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KUW5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW5_9PHAE) HSP 1 Score: 261 bits (666), Expect = 1.410e-78 Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 2
Query: 311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ + +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID LGKT SHLWQ RKERLAIGDRSC NNAPS RGRVVNGL+AKACKT
Sbjct: 496 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLSAKACKT 664
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS87_9PHAE) HSP 1 Score: 254 bits (648), Expect = 6.880e-78 Identity = 127/172 (73.84%), Postives = 143/172 (83.14%), Query Frame = 2
Query: 311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKTSRV 820
++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ + +MFEAW+ +E+ +A+LGHR+WVEKAG +I I LGK L SHLWQ RKERLAIGDRSC NNAPS RGRVVN LTA ACKT V
Sbjct: 186 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVTIARLGKALLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNSLTANACKTKEV 357 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14776.3645.1 >prot_Ecto-sp13_S_contig14776.3645.1 ID=prot_Ecto-sp13_S_contig14776.3645.1|Name=mRNA_Ecto-sp13_S_contig14776.3645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp MFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLback to top mRNA from alignment at Ecto-sp13_S_contig14776:252..1177+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14776.3645.1 ID=mRNA_Ecto-sp13_S_contig14776.3645.1|Name=mRNA_Ecto-sp13_S_contig14776.3645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=926bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14776:252..1177+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14776:252..1177+ >mRNA_Ecto-sp13_S_contig14776.3645.1 ID=mRNA_Ecto-sp13_S_contig14776.3645.1|Name=mRNA_Ecto-sp13_S_contig14776.3645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14776:252..1177+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |