mRNA_Ecto-sp13_S_contig14768.3639.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14768.3639.1
Unique NamemRNA_Ecto-sp13_S_contig14768.3639.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14768.3639.1 vs. uniprot
Match: D7G9C3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C3_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 1.100e-57
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 1
Query:   43 GTEHEATEAFFSAGGRARTKAQIDQREDCFVLKEGLGAAFLVEPSSGTLAPWGVATVAVTVFNDTPGRYTDKMDITFTGAPTASLPMKVVAEGSPLSLKREALGL 357
            GTEHEATEAFFSAGGRARTKAQIDQREDCF LKEGLGAAFLVEPSSGTLAPWGVATVAVTVFNDTPGRYTDKMDIT TGAPTASLPMKVV EGSPLSLKREALGL
Sbjct:  395 GTEHEATEAFFSAGGRARTKAQIDQREDCFALKEGLGAAFLVEPSSGTLAPWGVATVAVTVFNDTPGRYTDKMDITLTGAPTASLPMKVVVEGSPLSLKREALGL 499          
BLAST of mRNA_Ecto-sp13_S_contig14768.3639.1 vs. uniprot
Match: A0A0N7L3F5_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L3F5_PLAHL)

HSP 1 Score: 59.7 bits (143), Expect = 6.210e-8
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 1
Query:   76 SAGGRARTKAQIDQREDCFVLKEGLGAAFLVEPSSGTLAPWGVATVAVTVFNDTPGRYTDKMDITFTGAPTASLPMKVVAEGSPLSLKREALGL 357
            S+ GR   + ++++ E   +L++  G AF + PSS ++ PW    V +  FN+ PG Y D +    TGA    L   V   GSPL+ KR  +GL
Sbjct: 1333 SSSGRKYLRQRVEEDEARQILRDNRGVAFDISPSSVSIPPWEQQVVQILCFNNMPGTYVDDIICRATGALPIILHTHVNVVGSPLTFKRNCVGL 1426          
BLAST of mRNA_Ecto-sp13_S_contig14768.3639.1 vs. uniprot
Match: A0A7M7PBI8_STRPU (Uncharacterized protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PBI8_STRPU)

HSP 1 Score: 57.0 bits (136), Expect = 5.430e-7
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   79 AGGRARTKAQIDQREDCFVLKEGLGAAFLVEPSSGTLAPWGVATVAVTVFNDTPGRYTDKMDITFTGAPTASLPMKVVAEGSPLSLK 339
            A  R+++ AQ        +L+EG GAAFLV+P SG L P+    VAVT ++D  G YTD+++   +      +P+ +   G PL  +
Sbjct: 1158 ADPRSKSLAQSQTDSMKAILREGQGAAFLVQPCSGILEPFATLEVAVTAYSDMWGNYTDQLNCEVSNLEPVCIPISLGVTGCPLKFQ 1244          
BLAST of mRNA_Ecto-sp13_S_contig14768.3639.1 vs. uniprot
Match: A0A3B4CP18_PYGNA (DLEC1 cilia and flagella associated protein n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4CP18_PYGNA)

HSP 1 Score: 54.7 bits (130), Expect = 3.450e-6
Identity = 38/102 (37.25%), Postives = 52/102 (50.98%), Query Frame = 1
Query:   46 TEHEATEAFFSAGGRARTKA----QIDQREDCFV---LKEGLGAAFLVEPSSGTLAPWGVATVAVTVFNDTPGRYTDKMDITFTGAPTASLPMKVVAEGSPL 330
            T H A  A F+      T A    +I+++E  FV   L  G GAAF VEP SGTL P+  AT+ +T F++  G Y D +           +PMK+  EG P+
Sbjct:  670 TNHTAIAAPFTIEAEVFTHAVQAKKIEEKEYEFVAGLLAHGKGAAFFVEPESGTLGPFESATINITAFSNMWGEYEDHLICKVGELDPTLVPMKLSVEGCPI 771          
BLAST of mRNA_Ecto-sp13_S_contig14768.3639.1 vs. uniprot
Match: A0A6P4YD41_BRABE (deleted in lung and esophageal cancer protein 1-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YD41_BRABE)

HSP 1 Score: 53.1 bits (126), Expect = 1.220e-5
Identity = 28/84 (33.33%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   97 TKAQIDQREDCFVLKEGLGAAFLVEPSSGTLAPWGVATVAVTVFNDTPGRYTDKMDITFTGAPTASLPMKVVAEGSPLSLKREA 348
            +K+Q+D  +   +L++G GAAFLV+P++G L P+   TV +T ++D  G+Y D +          S+P+++   G PL+ +  A
Sbjct: 1611 SKSQVDFSQA--LLRDGRGAAFLVQPAAGVLMPFHTVTVEITSYSDIWGQYKDHLICKVKDLAPVSIPVRMTVVGCPLNFQMTA 1692          
BLAST of mRNA_Ecto-sp13_S_contig14768.3639.1 vs. uniprot
Match: UPI001864A213 (deleted in lung and esophageal cancer protein 1 n=3 Tax=Serrasalmidae TaxID=42495 RepID=UPI001864A213)

HSP 1 Score: 52.0 bits (123), Expect = 3.060e-5
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 1
Query:  133 VLKEGLGAAFLVEPSSGTLAPWGVATVAVTVFNDTPGRYTDKMDITFTGAPTASLPMKVVAEGSPL 330
            +L  G GAAF VEP SGTL P+  AT+ +T F++  G+Y D +           +PMK+  EG P+
Sbjct: 1116 LLTHGKGAAFFVEPESGTLGPFETATINITAFSNMWGKYEDHLICKVGELDPTLIPMKLSVEGCPV 1181          
BLAST of mRNA_Ecto-sp13_S_contig14768.3639.1 vs. uniprot
Match: A0A1S3JXK0_LINUN (deleted in lung and esophageal cancer protein 1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JXK0_LINUN)

HSP 1 Score: 51.2 bits (121), Expect = 5.690e-5
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 1
Query:   88 RARTKAQIDQREDCFV-LKEGLGAAFLVEPSSGTLAPWGVATVAVTVFNDTPGRYTDKMDITFTGAPTASLPMKVVAEGSPL 330
            ++ TKAQ    E C V L++G GAAF ++PSSG L P+    + +T FND  G Y DK+           +P+ +   G PL
Sbjct: 1115 KSTTKAQA---EFCQVMLRDGKGAAFSIQPSSGVLEPFSELMIEITAFNDMWGHYQDKLVCKVDKLDIVQIPVTMTVVGCPL 1193          
BLAST of mRNA_Ecto-sp13_S_contig14768.3639.1 vs. uniprot
Match: R7VKQ0_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VKQ0_CAPTE)

HSP 1 Score: 50.8 bits (120), Expect = 7.770e-5
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query:  133 VLKEGLGAAFLVEPSSGTLAPWGVATVAVTVFNDTPGRYTDKMDITFTGAPTASLPMKVVAEGSPL 330
            +L EG GAAF+VEP SG L P+G   + +T F+D  G+YTD++           + MK+   GSPL
Sbjct: 1160 MLLEGKGAAFVVEPPSGQLQPFGQQRIQLTAFSDIWGQYTDQLICKIGDLEAQRIEMKMGVIGSPL 1225          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14768.3639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G9C3_ECTSI1.100e-5797.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0N7L3F5_PLAHL6.210e-835.11Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A7M7PBI8_STRPU5.430e-735.63Uncharacterized protein n=2 Tax=Strongylocentrotus... [more]
A0A3B4CP18_PYGNA3.450e-637.25DLEC1 cilia and flagella associated protein n=1 Ta... [more]
A0A6P4YD41_BRABE1.220e-533.33deleted in lung and esophageal cancer protein 1-li... [more]
UPI001864A2133.060e-540.91deleted in lung and esophageal cancer protein 1 n=... [more]
A0A1S3JXK0_LINUN5.690e-537.80deleted in lung and esophageal cancer protein 1 n=... [more]
R7VKQ0_CAPTE7.770e-542.42Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14768contigEcto-sp13_S_contig14768:2071..2769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score204.5
Seed ortholog evalue2.7e-50
Seed eggNOG ortholog2880.D7G9C3
Preferred nameDLEC1
Model size357
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008285,GO:0042127,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0065007
Exons2
EggNOG free text desc.negative regulation of cell proliferation
EggNOG OGs28IDE@1,2QQQ5@2759
Cds size357
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462787.6038551-CDS-Ecto-sp13_S_contig14768:2070..23471681462787.6038551-CDS-Ecto-sp13_S_contig14768:2070..2347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14768 2071..2347 +
1681462787.6135688-CDS-Ecto-sp13_S_contig14768:2689..27691681462787.6135688-CDS-Ecto-sp13_S_contig14768:2689..2769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14768 2690..2769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14768.3639.1prot_Ecto-sp13_S_contig14768.3639.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14768 2071..2769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14768.3639.1

>prot_Ecto-sp13_S_contig14768.3639.1 ID=prot_Ecto-sp13_S_contig14768.3639.1|Name=mRNA_Ecto-sp13_S_contig14768.3639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
SRTSSIALSLHQPTGTEHEATEAFFSAGGRARTKAQIDQREDCFVLKEGL
GAAFLVEPSSGTLAPWGVATVAVTVFNDTPGRYTDKMDITFTGAPTASLP
MKVVAEGSPLSLKREALGL
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mRNA from alignment at Ecto-sp13_S_contig14768:2071..2769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14768.3639.1 ID=mRNA_Ecto-sp13_S_contig14768.3639.1|Name=mRNA_Ecto-sp13_S_contig14768.3639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14768:2071..2769+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCGAACCTCCAGCATCGCACTTTCTCTCCATCAACCAACAGGAACGGA GCACGAAGCAACGGAAGCGTTTTTCTCTGCGGGGGGTCGGGCCAGGACCA AGGCCCAGATCGATCAGAGAGAAGACTGCTTCGTGCTGAAAGAGGGCCTC GGGGCGGCCTTCCTCGTGGAGCCTTCGTCTGGGACCCTTGCGCCGTGGGG CGTGGCTACGGTAGCGGTGACGGTGTTCAACGACACCCCCGGGAGATACA CGGACAAAATGGACATCACTTTTACGGGTGAGCCCATTCCCACAGTCGAT GCGTGCGTGGGTGCGTCTGGCGTCACCTGAGCGACGAACCCGTTACCCGT TGCAATCTGAGGTATGCTGGTCCTTGACAGAGATTTAGTTGCACCGACAG TGTCCCTTTTGCGTGCGAAGATCGAGGAATGGTTTATGACATGCCATCCA TAACAGACTGTGTTCCACAAGTGTAGAGAGTGAAGTGCTGGTGCTGGTGG CGGTGCTGCTGATGCTGACCCTGCTGGTACCAGTGGCAAGAACGCCCGCG AACACCAGACCTAGCTAACCCGGCGCTATTCTTAACATCTCACATTCCGA TGGGTTCGGCAACTACAAGGTGCACCAACAGCGTCTTTGCCGATGAAAGT CGTTGCTGAGGGGTCCCCGTTATCGCTGAAGAGGGAGGCACTGGGACTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14768:2071..2769+

>mRNA_Ecto-sp13_S_contig14768.3639.1 ID=mRNA_Ecto-sp13_S_contig14768.3639.1|Name=mRNA_Ecto-sp13_S_contig14768.3639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14768:2071..2769+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCGAACCTCCAGCATCGCACTTTCTCTCCATCAACCAACAGGAACGGA
GCACGAAGCAACGGAAGCGTTTTTCTCTGCGGGGGGTCGGGCCAGGACCA
AGGCCCAGATCGATCAGAGAGAAGACTGCTTCGTGCTGAAAGAGGGCCTC
GGGGCGGCCTTCCTCGTGGAGCCTTCGTCTGGGACCCTTGCGCCGTGGGG
CGTGGCTACGGTAGCGGTGACGGTGTTCAACGACACCCCCGGGAGATACA
CGGACAAAATGGACATCACTTTTACGGGTGCACCAACAGCGTCTTTGCCG
ATGAAAGTCGTTGCTGAGGGGTCCCCGTTATCGCTGAAGAGGGAGGCACT
GGGACTG
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